메뉴 건너뛰기




Volumn 48, Issue 12, 2016, Pages 1500-1507

Spatial intratumoral heterogeneity and temporal clonal evolution in esophageal squamous cell carcinoma

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; TUMOR PROTEIN;

EID: 84991735080     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.3683     Document Type: Article
Times cited : (199)

References (80)
  • 1
    • 84924271853 scopus 로고    scopus 로고
    • Global cancer statistics 2012
    • Torre, L.A. et al. Global cancer statistics, 2012. CA Cancer J. Clin. 65, 87-108 (2015
    • (2015) CA Cancer J. Clin , vol.65 , pp. 87-108
    • Torre, L.A.1
  • 2
    • 84918815964 scopus 로고    scopus 로고
    • Cancer incidence and mortality worldwide: Sources, methods and major patterns in globocan 2012
    • Ferlay, J. et al. Cancer incidence and mortality worldwide: sources, methods and major patterns in GLOBOCAN 2012. Int. J. Cancer 136, E359-E386 (2015
    • (2015) Int. J. Cancer , vol.136 , pp. E359-E386
    • Ferlay, J.1
  • 4
    • 84867398217 scopus 로고    scopus 로고
    • Comparative genomic analysis of esophageal adenocarcinoma and squamous cell carcinoma
    • Agrawal, N. et al. Comparative genomic analysis of esophageal adenocarcinoma and squamous cell carcinoma. Cancer Discov. 2, 899-905 (2012
    • (2012) Cancer Discov , vol.2 , pp. 899-905
    • Agrawal, N.1
  • 5
    • 84899747138 scopus 로고    scopus 로고
    • Identification of genomic alterations in oesophageal squamous cell cancer
    • Song, Y. et al. Identification of genomic alterations in oesophageal squamous cell cancer. Nature 509, 91-95 (2014
    • (2014) Nature , vol.509 , pp. 91-95
    • Song, Y.1
  • 6
    • 84899628626 scopus 로고    scopus 로고
    • Genomic and molecular characterization of esophageal squamous cell carcinoma
    • Lin, D.C. et al. Genomic and molecular characterization of esophageal squamous cell carcinoma. Nat. Genet. 46, 467-473 (2014
    • (2014) Nat. Genet , vol.46 , pp. 467-473
    • Lin, D.C.1
  • 7
    • 84922068082 scopus 로고    scopus 로고
    • Genetic landscape of esophageal squamous cell carcinoma
    • Gao, Y.B. et al. Genetic landscape of esophageal squamous cell carcinoma. Nat. Genet. 46, 1097-1102 (2014
    • (2014) Nat. Genet , vol.46 , pp. 1097-1102
    • Gao, Y.B.1
  • 8
    • 84926142624 scopus 로고    scopus 로고
    • Genomic analyses reveal mutational signatures and frequently altered genes in esophageal squamous cell carcinoma
    • Zhang, L. et al. Genomic analyses reveal mutational signatures and frequently altered genes in esophageal squamous cell carcinoma. Am. J. Hum. Genet. 96, 597-611 (2015
    • (2015) Am. J. Hum. Genet , vol.96 , pp. 597-611
    • Zhang, L.1
  • 9
    • 84957799431 scopus 로고    scopus 로고
    • Whole-genome sequencing reveals diverse models of structural variations in esophageal squamous cell carcinoma
    • Cheng, C. et al. Whole-genome sequencing reveals diverse models of structural variations in esophageal squamous cell carcinoma. Am. J. Hum. Genet. 98, 256-274 (2016
    • (2016) Am. J. Hum. Genet , vol.98 , pp. 256-274
    • Cheng, C.1
  • 10
    • 84964240053 scopus 로고    scopus 로고
    • Biological and therapeutic impact of intratumor heterogeneity in cancer evolution
    • McGranahan, N. & Swanton, C. Biological and therapeutic impact of intratumor heterogeneity in cancer evolution. Cancer Cell 27, 15-26 (2015
    • (2015) Cancer Cell , vol.27 , pp. 15-26
    • McGranahan, N.1    Swanton, C.2
  • 11
    • 1542515338 scopus 로고    scopus 로고
    • A census of human cancer genes
    • Futreal, P.A. et al. A census of human cancer genes. Nat. Rev. Cancer 4, 177-183 (2004
    • (2004) Nat. Rev. Cancer , vol.4 , pp. 177-183
    • Futreal, P.A.1
  • 12
    • 84892833777 scopus 로고    scopus 로고
    • Discovery and saturation analysis of cancer genes across 21 tumour types
    • Lawrence, M.S. et al. Discovery and saturation analysis of cancer genes across 21 tumour types. Nature 505, 495-501 (2014
    • (2014) Nature , vol.505 , pp. 495-501
    • Lawrence, M.S.1
  • 13
    • 84928254065 scopus 로고    scopus 로고
    • Clonal status of actionable driver events and the timing of mutational processes in cancer evolution
    • McGranahan, N. et al. Clonal status of actionable driver events and the timing of mutational processes in cancer evolution. Sci. Transl. Med. 7, 283ra54 (2015
    • (2015) Sci. Transl. Med , vol.7 , pp. 283ra54
    • McGranahan, N.1
  • 14
    • 80055101101 scopus 로고    scopus 로고
    • Temporal dissection of tumorigenesis in primary cancers
    • Durinck, S. et al. Temporal dissection of tumorigenesis in primary cancers. Cancer Discov. 1, 137-143 (2011
    • (2011) Cancer Discov , vol.1 , pp. 137-143
    • Durinck, S.1
  • 15
    • 84862526929 scopus 로고    scopus 로고
    • The clonal and mutational evolution spectrum of primary triple-negative breast cancers
    • Shah, S.P. et al. The clonal and mutational evolution spectrum of primary triple-negative breast cancers. Nature 486, 395-399 (2012
    • (2012) Nature , vol.486 , pp. 395-399
    • Shah, S.P.1
  • 16
    • 84892409192 scopus 로고    scopus 로고
    • Widespread genetic heterogeneity in multiple myeloma: Implications for targeted therapy
    • Lohr, J.G. et al. Widespread genetic heterogeneity in multiple myeloma: implications for targeted therapy. Cancer Cell 25, 91-101 (2014
    • (2014) Cancer Cell , vol.25 , pp. 91-101
    • Lohr, J.G.1
  • 17
    • 84874102335 scopus 로고    scopus 로고
    • Evolution and impact of subclonal mutations in chronic lymphocytic leukemia
    • Landau, D.A. et al. Evolution and impact of subclonal mutations in chronic lymphocytic leukemia. Cell 152, 714-726 (2013
    • (2013) Cell , vol.152 , pp. 714-726
    • Landau, D.A.1
  • 18
    • 84887127381 scopus 로고    scopus 로고
    • Consistent and differential genetic aberrations between esophageal dysplasia and squamous cell carcinoma detected by array comparative genomic hybridization
    • Shi, Z.Z. et al. Consistent and differential genetic aberrations between esophageal dysplasia and squamous cell carcinoma detected by array comparative genomic hybridization. Clin. Cancer Res. 19, 5867-5878 (2013
    • (2013) Clin. Cancer Res , vol.19 , pp. 5867-5878
    • Shi, Z.Z.1
  • 19
    • 84966648735 scopus 로고    scopus 로고
    • Ano1 protein as a potential biomarker for esophageal cancer prognosis and precancerous lesion development prediction
    • Shang, L. et al. ANO1 protein as a potential biomarker for esophageal cancer prognosis and precancerous lesion development prediction. Oncotarget 7, 24374-24382 (2016
    • (2016) Oncotarget , vol.7 , pp. 24374-24382
    • Shang, L.1
  • 20
    • 84875035786 scopus 로고    scopus 로고
    • Calcium-Activated chloride channel ano1 promotes breast cancer progression by activating EGFR and camk signaling
    • Britschgi, A. et al. Calcium-Activated chloride channel ANO1 promotes breast cancer progression by activating EGFR and CAMK signaling. Proc. Natl. Acad. Sci. USA 110, E1026-E1034 (2013
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. E1026-E1034
    • Britschgi, A.1
  • 21
    • 33846225205 scopus 로고    scopus 로고
    • Amplification and overexpression of cttn (ems1) contribute to the metastasis of esophageal squamous cell carcinoma by promoting cell migration and anoikis resistance
    • Luo, M.L. et al. Amplification and overexpression of CTTN (EMS1) contribute to the metastasis of esophageal squamous cell carcinoma by promoting cell migration and anoikis resistance. Cancer Res. 66, 11690-11699 (2006
    • (2006) Cancer Res , vol.66 , pp. 11690-11699
    • Luo, M.L.1
  • 22
    • 84895867132 scopus 로고    scopus 로고
    • Genome-wide gene expression profile analyses identify cttn as a potential prognostic marker in esophageal cancer
    • Lu, P. et al. Genome-wide gene expression profile analyses identify CTTN as a potential prognostic marker in esophageal cancer. PLoS One 9, e88918 (2014
    • (2014) PLoS One , vol.9 , pp. e88918
    • Lu, P.1
  • 23
    • 84907855592 scopus 로고    scopus 로고
    • Spatial and temporal diversity in genomic instability processes defines lung cancer evolution
    • de Bruin, E.C. et al. Spatial and temporal diversity in genomic instability processes defines lung cancer evolution. Science 346, 251-256 (2014
    • (2014) Science , vol.346 , pp. 251-256
    • De Bruin, E.C.1
  • 24
    • 84895876130 scopus 로고    scopus 로고
    • Genomic architecture and evolution of clear cell renal cell carcinomas defined by multiregion sequencing
    • Gerlinger, M. et al. Genomic architecture and evolution of clear cell renal cell carcinomas defined by multiregion sequencing. Nat. Genet. 46, 225-233 (2014
    • (2014) Nat. Genet , vol.46 , pp. 225-233
    • Gerlinger, M.1
  • 25
    • 84938770152 scopus 로고    scopus 로고
    • Tracking the genomic evolution of esophageal adenocarcinoma through neoadjuvant chemotherapy
    • Murugaesu, N. et al. Tracking the genomic evolution of esophageal adenocarcinoma through neoadjuvant chemotherapy. Cancer Discov. 5, 821-831 (2015
    • (2015) Cancer Discov , vol.5 , pp. 821-831
    • Murugaesu, N.1
  • 26
    • 84959467752 scopus 로고    scopus 로고
    • Deconstructsigs: Delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution
    • Rosenthal, R., McGranahan, N., Herrero, J., Taylor, B.S. & Swanton, C. DeconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution. Genome Biol. 17, 31 (2016
    • (2016) Genome Biol , vol.17 , pp. 31
    • Rosenthal, R.1    McGranahan, N.2    Herrero, J.3    Taylor, B.S.4    Swanton, C.5
  • 27
    • 84882837534 scopus 로고    scopus 로고
    • Signatures of mutational processes in human cancer
    • Alexandrov, L.B. et al. Signatures of mutational processes in human cancer. Nature 500, 415-421 (2013
    • (2013) Nature , vol.500 , pp. 415-421
    • Alexandrov, L.B.1
  • 28
    • 84877873177 scopus 로고    scopus 로고
    • Epigenetic alterations and their clinical implications in esophageal squamous cell carcinoma
    • Toh, Y., Egashira, A. & Yamamoto, M. Epigenetic alterations and their clinical implications in esophageal squamous cell carcinoma. Gen. Thorac. Cardiovasc. Surg. 61, 262-269 (2013
    • (2013) Gen. Thorac. Cardiovasc. Surg , vol.61 , pp. 262-269
    • Toh, Y.1    Egashira, A.2    Yamamoto, M.3
  • 29
    • 84860897983 scopus 로고    scopus 로고
    • Epigenomic program of barrett's-Associated neoplastic progression reveals possible involvement of insulin signaling pathways
    • Agarwal, R. et al. Epigenomic program of Barrett's-Associated neoplastic progression reveals possible involvement of insulin signaling pathways. Endocr. Relat. Cancer 19, L5-L9 (2012
    • (2012) Endocr. Relat. Cancer , vol.19 , pp. L5-L9
    • Agarwal, R.1
  • 30
    • 79953737588 scopus 로고    scopus 로고
    • Widespread hypomethylation occurs early and synergizes with gene amplification during esophageal carcinogenesis
    • Alvarez, H. et al. Widespread hypomethylation occurs early and synergizes with gene amplification during esophageal carcinogenesis. PLoS Genet. 7, e1001356 (2011
    • (2011) PLoS Genet , vol.7 , pp. e1001356
    • Alvarez, H.1
  • 31
    • 84924627714 scopus 로고    scopus 로고
    • Intratumor DNA methylation heterogeneity reflects clonal evolution in aggressive prostate cancer
    • Brocks, D. et al. Intratumor DNA methylation heterogeneity reflects clonal evolution in aggressive prostate cancer. Cell Rep. 8, 798-806 (2014
    • (2014) Cell Rep , vol.8 , pp. 798-806
    • Brocks, D.1
  • 32
    • 84942307003 scopus 로고    scopus 로고
    • DNA methylation and somatic mutations converge on the cell cycle and define similar evolutionary histories in brain tumors
    • Mazor, T. et al. DNA methylation and somatic mutations converge on the cell cycle and define similar evolutionary histories in brain tumors. Cancer Cell 28, 307-317 (2015
    • (2015) Cancer Cell , vol.28 , pp. 307-317
    • Mazor, T.1
  • 33
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • Robinson, D.F. & Foulds, L.R. Comparison of phylogenetic trees. Math. Biosci. 53, 131-147 (1981
    • (1981) Math. Biosci , vol.53 , pp. 131-147
    • Robinson, D.F.1    Foulds, L.R.2
  • 34
    • 80155148301 scopus 로고    scopus 로고
    • The eph-receptor a7 is a soluble tumor suppressor for follicular lymphoma
    • Oricchio, E. et al. The Eph-receptor A7 is a soluble tumor suppressor for follicular lymphoma. Cell 147, 554-564 (2011
    • (2011) Cell , vol.147 , pp. 554-564
    • Oricchio, E.1
  • 35
    • 84856562941 scopus 로고    scopus 로고
    • Epha7, a new target gene for 6q deletion in t-cell lymphoblastic lymphomas
    • López-Nieva, P. et al. EPHA7, a new target gene for 6q deletion in T-cell lymphoblastic lymphomas. Carcinogenesis 33, 452-458 (2012
    • (2012) Carcinogenesis , vol.33 , pp. 452-458
    • López-Nieva, P.1
  • 36
    • 58649120820 scopus 로고    scopus 로고
    • Methylation of protocadherin 10, a novel tumor suppressor, is associated with poor prognosis in patients with gastric cancer
    • e1
    • Yu, J. et al. Methylation of protocadherin 10, a novel tumor suppressor, is associated with poor prognosis in patients with gastric cancer. Gastroenterology 136, 640-651.e1 (2009
    • (2009) Gastroenterology , vol.136 , pp. 640-651
    • Yu, J.1
  • 37
    • 84907499174 scopus 로고    scopus 로고
    • A novel wnt regulatory axis in endometrioid endometrial cancer
    • Zhao, Y. et al. A novel Wnt regulatory axis in endometrioid endometrial cancer. Cancer Res. 74, 5103-5117 (2014
    • (2014) Cancer Res , vol.74 , pp. 5103-5117
    • Zhao, Y.1
  • 38
    • 84859162851 scopus 로고    scopus 로고
    • Inactivation of the putative suppressor gene dok1 by promoter hypermethylation in primary human cancers
    • Saulnier, A. et al. Inactivation of the putative suppressor gene DOK1 by promoter hypermethylation in primary human cancers. Int. J. Cancer 130, 2484-2494 (2012
    • (2012) Int. J. Cancer , vol.130 , pp. 2484-2494
    • Saulnier, A.1
  • 39
    • 80053130614 scopus 로고    scopus 로고
    • Characterization of dok1, a candidate tumor suppressor gene, in epithelial ovarian cancer
    • Mercier, P.L. et al. Characterization of DOK1, a candidate tumor suppressor gene, in epithelial ovarian cancer. Mol. Oncol. 5, 438-453 (2011
    • (2011) Mol. Oncol , vol.5 , pp. 438-453
    • Mercier, P.L.1
  • 40
    • 84875129831 scopus 로고    scopus 로고
    • DNA methylation dynamics in health and disease
    • Bergman, Y. & Cedar, H. DNA methylation dynamics in health and disease. Nat. Struct. Mol. Biol. 20, 274-281 (2013
    • (2013) Nat. Struct. Mol. Biol , vol.20 , pp. 274-281
    • Bergman, Y.1    Cedar, H.2
  • 41
    • 84956897517 scopus 로고    scopus 로고
    • Do short, frequent DNA sequence motifs mould the epigenome?
    • Quante, T. & Bird, A. Do short, frequent DNA sequence motifs mould the epigenome? Nat. Rev. Mol. Cell Biol. 17, 257-262 (2016
    • (2016) Nat. Rev. Mol. Cell Biol , vol.17 , pp. 257-262
    • Quante, T.1    Bird, A.2
  • 42
    • 80053144962 scopus 로고    scopus 로고
    • A decade of exploring the cancer epigenome-biological and translational implications
    • Baylin, S.B. & Jones, P.A. A decade of exploring the cancer epigenome-biological and translational implications. Nat. Rev. Cancer 11, 726-734 (2011
    • (2011) Nat. Rev. Cancer , vol.11 , pp. 726-734
    • Baylin, S.B.1    Jones, P.A.2
  • 43
    • 84927704067 scopus 로고    scopus 로고
    • The role of DNA methylation in directing the functional organization of the cancer epigenome
    • Lay, F.D. et al. The role of DNA methylation in directing the functional organization of the cancer epigenome. Genome Res. 25, 467-477 (2015
    • (2015) Genome Res , vol.25 , pp. 467-477
    • Lay, F.D.1
  • 44
    • 59149084538 scopus 로고    scopus 로고
    • The human colon cancer methylome shows similar hypo-And hypermethylation at conserved tissue-specific cpg island shores
    • Irizarry, R.A. et al. The human colon cancer methylome shows similar hypo-And hypermethylation at conserved tissue-specific CpG island shores. Nat. Genet. 41, 178-186 (2009
    • (2009) Nat. Genet , vol.41 , pp. 178-186
    • Irizarry, R.A.1
  • 45
    • 70649095120 scopus 로고    scopus 로고
    • Differential methylation of tissue-And cancer-specific cpg island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts
    • Doi, A. et al. Differential methylation of tissue-And cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts. Nat. Genet. 41, 1350-1353 (2009
    • (2009) Nat. Genet , vol.41 , pp. 1350-1353
    • Doi, A.1
  • 46
    • 84952690771 scopus 로고    scopus 로고
    • Kinase inhibitors and monoclonal antibodies in oncology: Clinical implications
    • Gharwan, H. & Groninger, H. Kinase inhibitors and monoclonal antibodies in oncology: clinical implications. Nat. Rev. Clin. Oncol. 13, 209-227 (2016
    • (2016) Nat. Rev. Clin. Oncol , vol.13 , pp. 209-227
    • Gharwan, H.1    Groninger, H.2
  • 47
    • 84913590602 scopus 로고    scopus 로고
    • Cancer: Evolution within a lifetime
    • Gerlinger, M. et al. Cancer: evolution within a lifetime. Annu. Rev. Genet. 48, 215-236 (2014
    • (2014) Annu. Rev. Genet , vol.48 , pp. 215-236
    • Gerlinger, M.1
  • 48
    • 84989352642 scopus 로고    scopus 로고
    • Multiple region whole-exome sequencing reveals dramatically evolving intratumor genomic heterogeneity in esophageal squamous cell carcinoma
    • Cao, W. et al. Multiple region whole-exome sequencing reveals dramatically evolving intratumor genomic heterogeneity in esophageal squamous cell carcinoma. Oncogenesis 4, e175 (2015
    • (2015) Oncogenesis , vol.4 , pp. e175
    • Cao, W.1
  • 50
    • 24644498612 scopus 로고    scopus 로고
    • Downregulation of epha7 by hypermethylation in colorectal cancer
    • Wang, J. et al. Downregulation of EphA7 by hypermethylation in colorectal cancer. Oncogene 24, 5637-5647 (2005
    • (2005) Oncogene , vol.24 , pp. 5637-5647
    • Wang, J.1
  • 51
    • 84926627227 scopus 로고    scopus 로고
    • Abcb4 is frequently epigenetically silenced in human cancers and inhibits tumor growth
    • Kiehl, S. et al. ABCB4 is frequently epigenetically silenced in human cancers and inhibits tumor growth. Sci. Rep. 4, 6899 (2014
    • (2014) Sci. Rep , vol.4 , pp. 6899
    • Kiehl, S.1
  • 52
    • 84921651442 scopus 로고    scopus 로고
    • Protocadherin 10 suppresses tumorigenesis and metastasis in colorectal cancer and its genetic loss predicts adverse prognosis
    • Jao, T.M. et al. Protocadherin 10 suppresses tumorigenesis and metastasis in colorectal cancer and its genetic loss predicts adverse prognosis. Int. J. Cancer 135, 2593-2603 (2014
    • (2014) Int. J. Cancer , vol.135 , pp. 2593-2603
    • Jao, T.M.1
  • 53
    • 84884701475 scopus 로고    scopus 로고
    • Pcdh10 promoter hypermethylation is frequent in most histologic subtypes of mature lymphoid malignancies and occurs early in lymphomagenesis
    • Narayan, G. et al. PCDH10 promoter hypermethylation is frequent in most histologic subtypes of mature lymphoid malignancies and occurs early in lymphomagenesis. Genes Chromosom. Cancer 52, 1030-1041 (2013
    • (2013) Genes Chromosom. Cancer , vol.52 , pp. 1030-1041
    • Narayan, G.1
  • 54
    • 84960796740 scopus 로고    scopus 로고
    • Cancer statistics in China 2015
    • Chen, W. et al. Cancer statistics in China, 2015. CA Cancer J. Clin. 66, 115-132 (2016
    • (2016) CA Cancer J. Clin , vol.66 , pp. 115-132
    • Chen, W.1
  • 55
    • 84907023732 scopus 로고    scopus 로고
    • Samblaster: Fast duplicate marking and structural variant read extraction
    • Faust, G.G. & Hall, I.M. SAMBLASTER: fast duplicate marking and structural variant read extraction. Bioinformatics 30, 2503-2505 (2014
    • (2014) Bioinformatics , vol.30 , pp. 2503-2505
    • Faust, G.G.1    Hall, I.M.2
  • 56
    • 84896009017 scopus 로고    scopus 로고
    • From fastq data to high confidence variant calls: The genome analysis toolkit best practices pipeline
    • Van der Auwera, G.A. et al. From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline. Curr. Protoc. Bioinformatics 43, 11.10.1-11.10.33 (2013
    • (2013) Curr. Protoc. Bioinformatics , vol.43 , pp. 11101-111033
    • Van Der Auwera, G.A.1
  • 57
    • 84863229597 scopus 로고    scopus 로고
    • Varscan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
    • Koboldt, D.C. et al. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res. 22, 568-576 (2012
    • (2012) Genome Res , vol.22 , pp. 568-576
    • Koboldt, D.C.1
  • 58
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and samtools
    • Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 59
    • 77956534324 scopus 로고    scopus 로고
    • Annovar: Functional annotation of genetic variants from high-throughput sequencing data
    • Wang, K., Li, M. & Hakonarson, H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 38, e164 (2010
    • (2010) Nucleic Acids Res , vol.38 , pp. e164
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 60
    • 84940587003 scopus 로고    scopus 로고
    • Paired exome analysis of barrett's esophagus and adenocarcinoma
    • Stachler, M.D. et al. Paired exome analysis of Barrett's esophagus and adenocarcinoma. Nat. Genet. 47, 1047-1055 (2015
    • (2015) Nat. Genet , vol.47 , pp. 1047-1055
    • Stachler, M.D.1
  • 61
    • 3543105225 scopus 로고    scopus 로고
    • Circular binary segmentation for the analysis of array-based DNA copy number data
    • Olshen, A.B., Venkatraman, E.S., Lucito, R. & Wigler, M. Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics 5, 557-572 (2004
    • (2004) Biostatistics , vol.5 , pp. 557-572
    • Olshen, A.B.1    Venkatraman, E.S.2    Lucito, R.3    Wigler, M.4
  • 62
    • 84860782006 scopus 로고    scopus 로고
    • Absolute quantification of somatic DNA alterations in human cancer
    • Carter, S.L. et al. Absolute quantification of somatic DNA alterations in human cancer. Nat. Biotechnol. 30, 413-421 (2012
    • (2012) Nat. Biotechnol , vol.30 , pp. 413-421
    • Carter, S.L.1
  • 63
    • 68149165614 scopus 로고    scopus 로고
    • Predicting the effects of coding non-synonymous variants on protein function using the sift algorithm
    • Kumar, P., Henikoff, S. & Ng, P.C. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat. Protoc. 4, 1073-1081 (2009
    • (2009) Nat. Protoc , vol.4 , pp. 1073-1081
    • Kumar, P.1    Henikoff, S.2    Ng, P.C.3
  • 64
    • 77951640946 scopus 로고    scopus 로고
    • A method and server for predicting damaging missense mutations
    • Adzhubei, I.A. et al. A method and server for predicting damaging missense mutations. Nat. Methods 7, 248-249 (2010
    • (2010) Nat. Methods , vol.7 , pp. 248-249
    • Adzhubei, I.A.1
  • 65
    • 84878799611 scopus 로고    scopus 로고
    • Predicting functional effect of human missense mutations using polyphen-2
    • Chapter 7 Unit 7.20
    • Adzhubei, I., Jordan, D.M. & Sunyaev, S.R. Predicting functional effect of human missense mutations using PolyPhen-2. Curr. Protoc. Hum. Genet. Chapter 7, Unit 7.20 (2013
    • (2013) Curr. Protoc. Hum. Genet
    • Adzhubei, I.1    Jordan, D.M.2    Sunyaev, S.R.3
  • 67
    • 0036943052 scopus 로고    scopus 로고
    • Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle
    • Desper, R. & Gascuel, O. Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle. J. Comput. Biol. 9, 687-705 (2002
    • (2002) J. Comput. Biol , vol.9 , pp. 687-705
    • Desper, R.1    Gascuel, O.2
  • 68
    • 84891603467 scopus 로고    scopus 로고
    • Estimation of the fraction of cancer cells in a tumor DNA sample using DNA methylation
    • Takahashi, T. et al. Estimation of the fraction of cancer cells in a tumor DNA sample using DNA methylation. PLoS One 8, e82302 (2013
    • (2013) PLoS One , vol.8 , pp. e82302
    • Takahashi, T.1
  • 69
    • 84885008220 scopus 로고    scopus 로고
    • Pan-cancer patterns of somatic copy number alteration
    • Zack, T.I. et al. Pan-cancer patterns of somatic copy number alteration. Nat. Genet. 45, 1134-1140 (2013
    • (2013) Nat. Genet , vol.45 , pp. 1134-1140
    • Zack, T.I.1
  • 70
    • 73349142719 scopus 로고    scopus 로고
    • In situ cytotoxic and memory t cells predict outcome in patients with early-stage colorectal cancer
    • Pagés, F. et al. In situ cytotoxic and memory T cells predict outcome in patients with early-stage colorectal cancer. J. Clin. Oncol. 27, 5944-5951 (2009
    • (2009) J. Clin. Oncol , vol.27 , pp. 5944-5951
    • Pagés, F.1
  • 71
    • 84857777465 scopus 로고    scopus 로고
    • Infiltration of lynch colorectal cancers by activated immune cells associates with early staging of the primary tumor and absence of lymph node metastases
    • de Miranda, N.F. et al. Infiltration of Lynch colorectal cancers by activated immune cells associates with early staging of the primary tumor and absence of lymph node metastases. Clin. Cancer Res. 18, 1237-1245 (2012
    • (2012) Clin. Cancer Res , vol.18 , pp. 1237-1245
    • De Miranda, N.F.1
  • 72
    • 84948754020 scopus 로고    scopus 로고
    • Whole-transcriptome analysis of flow-sorted cervical cancer samples reveals that b cell expressed tcl1a is correlated with improved survival
    • Punt, S. et al. Whole-transcriptome analysis of flow-sorted cervical cancer samples reveals that B cell expressed TCL1A is correlated with improved survival. Oncotarget 6, 38681-38694 (2015
    • (2015) Oncotarget , vol.6 , pp. 38681-38694
    • Punt, S.1
  • 73
    • 84941195351 scopus 로고    scopus 로고
    • The tumor area occupied by tbet+ cells in deeply invading cervical cancer predicts clinical outcome
    • Gorter, A., Prins, F., van Diepen, M., Punt, S. & van der Burg, S.H. The tumor area occupied by Tbet+ cells in deeply invading cervical cancer predicts clinical outcome. J. Transl. Med. 13, 295 (2015
    • (2015) J. Transl. Med , vol.13 , pp. 295
    • Gorter, A.1    Prins, F.2    Van Diepen, M.3    Punt, S.4    Van Der Burg, S.H.5
  • 74
    • 84864359044 scopus 로고    scopus 로고
    • Differential DNA methylation in purified human blood cells: Implications for cell lineage and studies on disease susceptibility
    • Reinius, L.E. et al. Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility. PLoS One 7, e41361 (2012
    • (2012) PLoS One , vol.7 , pp. e41361
    • Reinius, L.E.1
  • 75
    • 84907270779 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of gastric adenocarcinoma
    • Cancer Genome Atlas Research Network
    • Cancer Genome Atlas Research Network. Comprehensive molecular characterization of gastric adenocarcinoma. Nature 513, 202-209 (2014
    • (2014) Nature , vol.513 , pp. 202-209
  • 76
    • 84955561447 scopus 로고    scopus 로고
    • Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma
    • Ceccarelli, M. et al. Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma. Cell 164, 550-563 (2016
    • (2016) Cell , vol.164 , pp. 550-563
    • Ceccarelli, M.1
  • 77
    • 84946195510 scopus 로고    scopus 로고
    • The molecular taxonomy of primary prostate cancer
    • Cancer Genome Atlas Research Network
    • Cancer Genome Atlas Research Network. The molecular taxonomy of primary prostate cancer. Cell 163, 1011-1025 (2015
    • (2015) Cell , vol.163 , pp. 1011-1025
  • 79
    • 84923362619 scopus 로고    scopus 로고
    • Integrative analysis of 111 reference human epigenomes
    • Kundaje, A. et al. Integrative analysis of 111 reference human epigenomes. Nature 518, 317-330 (2015
    • (2015) Nature , vol.518 , pp. 317-330
    • Kundaje, A.1
  • 80
    • 84891904054 scopus 로고    scopus 로고
    • A reference methylome database and analysis pipeline to facilitate integrative and comparative epigenomics
    • Song, Q. et al. A reference methylome database and analysis pipeline to facilitate integrative and comparative epigenomics. PLoS One 8, e81148 (2013).
    • (2013) PLoS One , vol.8 , pp. e81148
    • Song, Q.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.