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Volumn 5, Issue 8, 2015, Pages 821-832

Tracking the genomic evolution of esophageal adenocarcinoma through neoadjuvant chemotherapy

Author keywords

[No Author keywords available]

Indexed keywords

PLATINUM; ANTINEOPLASTIC AGENT;

EID: 84938770152     PISSN: 21598274     EISSN: 21598290     Source Type: Journal    
DOI: 10.1158/2159-8290.CD-15-0412     Document Type: Article
Times cited : (219)

References (36)
  • 1
    • 84860120363 scopus 로고    scopus 로고
    • Bethesda: National Cancer Institute, National Institutes of Health
    • Surveillance, epidemiology, and end results program [Internet]. Bethesda: National Cancer Institute, National Institutes of Health; Available from: http://seer.cancer.gov/statfacts/html/esoph.html
    • Surveillance, Epidemiology, and End Results Program [Internet]
  • 2
    • 13744258445 scopus 로고    scopus 로고
    • The role of overdiagnosis and reclassification in the marked increase of esophageal adenocarcinoma incidence
    • Pohl H, Welch HG. The role of overdiagnosis and reclassification in the marked increase of esophageal adenocarcinoma incidence. J Natl Cancer Inst 2005;97:142-6.
    • (2005) J Natl Cancer Inst , vol.97 , pp. 142-146
    • Pohl, H.1    Welch, H.G.2
  • 3
    • 84878593111 scopus 로고    scopus 로고
    • Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity
    • Dulak AM, Stojanov P, Peng S, Lawrence MS, Fox C, Stewart C, et al. Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity. Nat Genet 2013;45:478-86.
    • (2013) Nat Genet , vol.45 , pp. 478-486
    • Dulak, A.M.1    Stojanov, P.2    Peng, S.3    Lawrence, M.S.4    Fox, C.5    Stewart, C.6
  • 5
    • 84907190376 scopus 로고    scopus 로고
    • Tumor stage after neoadjuvant chemotherapy determines survival after surgery for adenocarcinoma of the esophagus and esophagogastric junction
    • Davies AR, Gossage JA, Zylstra J, Mattsson F, Lagergren J, Maisey N, et al. Tumor stage after neoadjuvant chemotherapy determines survival after surgery for adenocarcinoma of the esophagus and esophagogastric junction. J Clin Oncol 2014;32:2983-90.
    • (2014) J Clin Oncol , vol.32 , pp. 2983-2990
    • Davies, A.R.1    Gossage, J.A.2    Zylstra, J.3    Mattsson, F.4    Lagergren, J.5    Maisey, N.6
  • 6
    • 79959572435 scopus 로고    scopus 로고
    • Survival after neoadjuvant chemotherapy or chemo- radiotherapy for resectable oesophageal carcinoma: An updated metaanalysis
    • Sjoquist KM, Burmeister BH, Smithers BM, Zalcberg JR, Simes RJ, Barbour A, et al. Survival after neoadjuvant chemotherapy or chemo- radiotherapy for resectable oesophageal carcinoma: an updated metaanalysis. Lancet Oncol 2011;12:681-92.
    • (2011) Lancet Oncol , vol.12 , pp. 681-692
    • Sjoquist, K.M.1    Burmeister, B.H.2    Smithers, B.M.3    Zalcberg, J.R.4    Simes, R.J.5    Barbour, A.6
  • 7
    • 84865238936 scopus 로고    scopus 로고
    • Gastrointestinal adenocarcinomas of the esophagus, stomach, and colon exhibit distinct patterns of genome instability and oncogenesis
    • Dulak AM, Schumacher SE, van Lieshout J, Imamura Y, Fox C, Shim B, et al. Gastrointestinal adenocarcinomas of the esophagus, stomach, and colon exhibit distinct patterns of genome instability and oncogenesis. Cancer Res 2012;72:4383-93.
    • (2012) Cancer Res , vol.72 , pp. 4383-4393
    • Dulak, A.M.1    Schumacher, S.E.2    Van Lieshout, J.3    Imamura, Y.4    Fox, C.5    Shim, B.6
  • 8
    • 84867398217 scopus 로고    scopus 로고
    • Comparative genomic analysis of esophageal adenocarcinoma and squamous cell carcinoma
    • Agrawal N, Jiao Y, Bettegowda C, Hutfless SM, Wang Y, David S, et al. Comparative genomic analysis of esophageal adenocarcinoma and squamous cell carcinoma. Cancer Discov 2012;2:899-905
    • (2012) Cancer Discov , vol.2 , pp. 899-905
    • Agrawal, N.1    Jiao, Y.2    Bettegowda, C.3    Hutfless, S.M.4    Wang, Y.5    David, S.6
  • 9
    • 84867744264 scopus 로고    scopus 로고
    • Evolution of the cancer genome
    • Yates LR, Campbell PJ. Evolution of the cancer genome. Nat Rev Genet 2012;13:795-806.
    • (2012) Nat Rev Genet , vol.13 , pp. 795-806
    • Yates, L.R.1    Campbell, P.J.2
  • 10
    • 84884365015 scopus 로고    scopus 로고
    • The causes and consequences of genetic heterogeneity in cancer evolution
    • Burrell RA, McGranahan N, Bartek J, Swanton C. The causes and consequences of genetic heterogeneity in cancer evolution. Nature 2013;501:338-45.
    • (2013) Nature , vol.501 , pp. 338-345
    • Burrell, R.A.1    McGranahan, N.2    Bartek, J.3    Swanton, C.4
  • 11
    • 84895876130 scopus 로고    scopus 로고
    • Genomic architecture and evolution of clear cell renal cell carcinomas defined by multiregion sequencing
    • Gerlinger M, Horswell S, Larkin J, Rowan AJ, Salm MP, Varela I, et al. Genomic architecture and evolution of clear cell renal cell carcinomas defined by multiregion sequencing. Nat Genet 2014;46:225–33.
    • (2014) Nat Genet , vol.46 , pp. 225-233
    • Gerlinger, M.1    Horswell, S.2    Larkin, J.3    Rowan, A.J.4    Salm, M.P.5    Varela, I.6
  • 12
    • 84907855592 scopus 로고    scopus 로고
    • Spatial and temporal diversity in genomic instability processes defines lung cancer evolution
    • de BruinE C, McGranahan N, Mitter R, Salm M, Wedge DC, Yates L, et al. Spatial and temporal diversity in genomic instability processes defines lung cancer evolution. Science 2014;346:251-6.
    • (2014) Science , vol.346 , pp. 251-256
    • De, B.C.1    McGranahan, N.2    Mitter, R.3    Salm, M.4    Wedge, D.C.5    Yates, L.6
  • 15
    • 84894043638 scopus 로고    scopus 로고
    • Genome-wide analysis of esophageal adenocarcinoma yields specific copy number aberrations that correlate with prognosis
    • Frankel A, Armour N, Nancarrow D, Krause L, Hayward N, Lampe G, et al. Genome-wide analysis of esophageal adenocarcinoma yields specific copy number aberrations that correlate with prognosis. Genes Chromosomes Cancer 2014;53:324-38.
    • (2014) Genes Chromosomes Cancer , vol.53 , pp. 324-338
    • Frankel, A.1    Armour, N.2    Nancarrow, D.3    Krause, L.4    Hayward, N.5    Lampe, G.6
  • 16
    • 84892427011 scopus 로고    scopus 로고
    • Temporal and spatial evolution of somatic chromosomal alterations: A case-cohort study of Barrett’s esophagus
    • Li X, Galipeau PC, Paulson TG, Sanchez CA, Arnaudo J, Liu K, et al. Temporal and spatial evolution of somatic chromosomal alterations: a case-cohort study of Barrett’s esophagus. Cancer Prev Res (Phila) 2014;7:114-27.
    • (2014) Cancer Prev Res (Phila) , vol.7 , pp. 114-127
    • Li, X.1    Galipeau, P.C.2    Paulson, T.G.3    Sanchez, C.A.4    Arnaudo, J.5    Liu, K.6
  • 17
    • 84923538176 scopus 로고    scopus 로고
    • Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis
    • Nones K, Waddell N, Wayte N, Patch AM, Bailey P, Newell F, et al. Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis. Nat Commun 2014;5:5224
    • (2014) Nat Commun , vol.5
    • Nones, K.1    Waddell, N.2    Wayte, N.3    Patch, A.M.4    Bailey, P.5    Newell, F.6
  • 18
    • 0033504552 scopus 로고    scopus 로고
    • The parsimony ratchet, a new method for rapid parsimony analysis
    • Nixon KC. The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics 1999;15:407-14.
    • (1999) Cladistics , vol.15 , pp. 407-414
    • Nixon, K.C.1
  • 19
    • 84961289235 scopus 로고    scopus 로고
    • Deep sequencing identifi es genetic heterogeneity and recurrent convergent evolution in chronic lymphocytic leukemia
    • Ojha J, Ayres J, Secreto C, Tschumper R, Rabe K, Van Dyke D, et al. Deep sequencing identifi es genetic heterogeneity and recurrent convergent evolution in chronic lymphocytic leukemia. Blood 2015;125:492-8.
    • (2015) Blood , vol.125 , pp. 492-498
    • Ojha, J.1    Ayres, J.2    Secreto, C.3    Tschumper, R.4    Rabe, K.5    Van Dyke, D.6
  • 20
    • 84901852284 scopus 로고    scopus 로고
    • Differentiation imbalance in single oesophageal progenitor cells causes clonal immortalization and field change
    • Alcolea MP, Greulich P, Wabik A, Frede J, Simons BD, Jones PH. Differentiation imbalance in single oesophageal progenitor cells causes clonal immortalization and field change. Nat Cell Biol 2014;16: 615-22.
    • (2014) Nat Cell Biol , vol.16 , pp. 615-622
    • Alcolea, M.P.1    Greulich, P.2    Wabik, A.3    Frede, J.4    Simons, B.D.5    Jones, P.H.6
  • 22
    • 84938793296 scopus 로고    scopus 로고
    • Cambridge: Broad Institute of MIT and Harvard
    • Broad Institute TCGA Genome Data Analysis Center (2014): SNP6 Copy number analysis (GISTIC2) [Internet]. Cambridge: Broad Institute of MIT and Harvard. http://gdac.broadinstitute.org/runs/analyses__2014_10_17/reports/cancer/ESCA-TP/CopyNumber_Gistic2/nozzle.html
    • (2014) SNP6 Copy Number Analysis (GISTIC2) [Internet]
  • 25
    • 84907481031 scopus 로고    scopus 로고
    • C. Elegans whole-genome sequencing reveals mutational signatures related to carcinogens and DNA repair deficiency
    • Meier B, Cooke SL, Weiss J, Bailly AP, Alexandrov LB, Marshall J, et al. C. elegans whole-genome sequencing reveals mutational signatures related to carcinogens and DNA repair deficiency. Genome Res 2014;24:1624–36.
    • (2014) Genome Res , vol.24 , pp. 1624-1636
    • Meier, B.1    Cooke, S.L.2    Weiss, J.3    Bailly, A.P.4    Alexandrov, L.B.5    Marshall, J.6
  • 27
    • 84925267081 scopus 로고    scopus 로고
    • Recurrent chromosomal gains and heterogeneous driver mutations characterise papillary renal cancer evolution
    • Kovac M, Navas C, Horswell S, Salm M, Bardella C, Rowan A, et al. Recurrent chromosomal gains and heterogeneous driver mutations characterise papillary renal cancer evolution. Nat Commun 2015;6:6336
    • (2015) Nat Commun , vol.6
    • Kovac, M.1    Navas, C.2    Horswell, S.3    Salm, M.4    Bardella, C.5    Rowan, A.6
  • 28
    • 0026065499 scopus 로고
    • Interstrand crosslinks are preferentially formed at the d(GC) sites in the reaction between cis-diamminedichloroplatinum (II) and DNA
    • Lemaire MA, Schwartz A, Rahmouni AR, Leng M. Interstrand crosslinks are preferentially formed at the d(GC) sites in the reaction between cis-diamminedichloroplatinum (II) and DNA. Proc Natl Acad Sci U S A 1991;88:1982-5.
    • (1991) Proc Natl Acad Sci U S A , vol.88 , pp. 1982-1985
    • Lemaire, M.A.1    Schwartz, A.2    Rahmouni, A.R.3    Leng, M.4
  • 29
    • 0028305674 scopus 로고
    • Pathologic assessment of tumor regression after preoperative chemoradiotherapy of esophageal carcinoma. Clinicopathologic correlations
    • Mandard AM, Dalibard F, Mandard JC, Marnay J, Henry-Amar M, Petiot JF, et al. Pathologic assessment of tumor regression after preoperative chemoradiotherapy of esophageal carcinoma. Clinicopathologic correlations. Cancer 1994;73:2680-6.
    • (1994) Cancer , vol.73 , pp. 2680-2686
    • Mandard, A.M.1    Dalibard, F.2    Mandard, J.C.3    Marnay, J.4    Henry-Amar, M.5    Petiot, J.F.6
  • 30
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows- Wheeler transform
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows- Wheeler transform. Bioinformatics 2009;25:1754-60
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 31
    • 84863229597 scopus 로고    scopus 로고
    • Var Scan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
    • Koboldt DC, Zhang Q, Larson DE, Shen D, McLellan MD, Lin L, et al. Var Scan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res 2012;22:568–76.
    • (2012) Genome Res , vol.22 , pp. 568-576
    • Koboldt, D.C.1    Zhang, Q.2    Larson, D.E.3    Shen, D.4    McLellan, M.D.5    Lin, L.6
  • 32
    • 84922572688 scopus 로고    scopus 로고
    • Sequenza: Allele-specifi c copy number and mutation profiles from tumor sequencing data
    • Favero F, Joshi T, Marquard AM, Birkbak NJ, Krzystanek M, Li Q, et al. Sequenza: allele-specifi c copy number and mutation profiles from tumor sequencing data. Ann Oncol 2015;26:64-70.
    • (2015) Ann Oncol , vol.26 , pp. 64-70
    • Favero, F.1    Joshi, T.2    Marquard, A.M.3    Birkbak, N.J.4    Krzystanek, M.5    Li, Q.6
  • 33
    • 84896711553 scopus 로고    scopus 로고
    • Tolerance of whole-genome doubling propagates chromosomal instability and accelerates cancer genome evolution
    • Dewhurst SM, McGranahan N, Burrell RA, Rowan AJ, Gronroos E, Endesfelder D, et al. Tolerance of whole-genome doubling propagates chromosomal instability and accelerates cancer genome evolution. Cancer Discov 2014;4:175-85.
    • (2014) Cancer Discov , vol.4 , pp. 175-185
    • Dewhurst, S.M.1    McGranahan, N.2    Burrell, R.A.3    Rowan, A.J.4    Gronroos, E.5    Endesfelder, D.6
  • 36
    • 79951548848 scopus 로고    scopus 로고
    • Phangorn: Phylogenetic analysis in R
    • Schliep KP. Phangorn: phylogenetic analysis in R. Bioinformatics 2011;27:592-3.
    • (2011) Bioinformatics , vol.27 , pp. 592-593
    • Schliep, K.P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.