SAMBLASTER: Fast duplicate marking and structural variant read extraction

Bioinformatics

Volumn 30, Issue 17, 2014, Pages 2503-2505

  Faust, Gregory G ^a   Hall, Ira M ^a,b  

^a Department of Biochemistry and Molecular Genetics ^*  (United States)

^b UNIVERSITY OF VIRGINIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER PROGRAM; DNA SEQUENCE; GENETIC VARIABILITY; GENOMICS; PROCEDURES; SEQUENCE ALIGNMENT;

GENOMIC STRUCTURAL VARIATION; GENOMICS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 84907023732     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu314     Document Type: Conference Paper

References (3)

1. Faust, G.G. and Hall, I.M. (2012) YAHA: fast and flexible long-read alignment with optimal breakpoint detection. Bioinformatics, 28, 2417-2424.
2. Li, H. et al. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics, 25, 2078-2079.
3. Quinlan, A.R. et al. (2010) Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome. Genome Res., 20, 623-635.