-
1
-
-
66249144426
-
The structure and function of G-protein-coupled receptors
-
1 Rosenbaum, D.M., Rasmussen, S.G., Kobilka, B.K., The structure and function of G-protein-coupled receptors. Nature 459 (2009), 356–363.
-
(2009)
Nature
, vol.459
, pp. 356-363
-
-
Rosenbaum, D.M.1
Rasmussen, S.G.2
Kobilka, B.K.3
-
3
-
-
79959564813
-
2A receptor structures reveal common features of GPCR activation
-
2A receptor structures reveal common features of GPCR activation. Nature 474 (2011), 521–525.
-
(2011)
Nature
, vol.474
, pp. 521-525
-
-
Lebon, G.1
Warne, T.2
Tate, C.G.3
-
4
-
-
65449161390
-
Ligand binding and micro-switches in 7TM receptor structures
-
4 Nygaard, R., Frimurer, T.M., et al., Schwartz, T.W., Ligand binding and micro-switches in 7TM receptor structures. Trends Pharmacol. Sci. 30 (2009), 249–259.
-
(2009)
Trends Pharmacol. Sci.
, vol.30
, pp. 249-259
-
-
Nygaard, R.1
Frimurer, T.M.2
Schwartz, T.W.3
-
5
-
-
84872221774
-
Structure-function of the G protein-coupled receptor superfamily
-
5 Katritch, V., Cherezov, V., Stevens, R.C., Structure-function of the G protein-coupled receptor superfamily. Annu. Rev. Pharmacol. Toxicol. 53 (2013), 531–556.
-
(2013)
Annu. Rev. Pharmacol. Toxicol.
, vol.53
, pp. 531-556
-
-
Katritch, V.1
Cherezov, V.2
Stevens, R.C.3
-
7
-
-
84898048030
-
Mapping the intramolecular signal transduction of G-protein coupled receptors
-
7 Lee, Y., Choi, S., Hyeon, C., Mapping the intramolecular signal transduction of G-protein coupled receptors. Proteins 82 (2014), 727–743.
-
(2014)
Proteins
, vol.82
, pp. 727-743
-
-
Lee, Y.1
Choi, S.2
Hyeon, C.3
-
8
-
-
0033637521
-
The dynamics of protein hydration water: a quantitative comparison of molecular dynamics simulations and neutron-scattering experiments
-
8 Tarek, M., Tobias, D.J., The dynamics of protein hydration water: a quantitative comparison of molecular dynamics simulations and neutron-scattering experiments. Biophys. J. 79 (2000), 3244–3257.
-
(2000)
Biophys. J.
, vol.79
, pp. 3244-3257
-
-
Tarek, M.1
Tobias, D.J.2
-
9
-
-
38849196324
-
Water as an active constituent in cell biology
-
9 Ball, P., Water as an active constituent in cell biology. Chem. Rev. 108 (2008), 74–108.
-
(2008)
Chem. Rev.
, vol.108
, pp. 74-108
-
-
Ball, P.1
-
10
-
-
65249122552
-
A unified model of protein dynamics
-
10 Frauenfelder, H., Chen, G., et al., Young, R.D., A unified model of protein dynamics. Proc. Natl. Acad. Sci. USA 106 (2009), 5129–5134.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 5129-5134
-
-
Frauenfelder, H.1
Chen, G.2
Young, R.D.3
-
11
-
-
0033747018
-
Molecular dynamics of solid-state lysozyme as affected by glycerol and water: a neutron scattering study
-
11 Tsai, A.M., Neumann, D.A., Bell, L.N., Molecular dynamics of solid-state lysozyme as affected by glycerol and water: a neutron scattering study. Biophys. J. 79 (2000), 2728–2732.
-
(2000)
Biophys. J.
, vol.79
, pp. 2728-2732
-
-
Tsai, A.M.1
Neumann, D.A.2
Bell, L.N.3
-
12
-
-
0037133342
-
Biological water at the protein surface: dynamical solvation probed directly with femtosecond resolution
-
12 Pal, S.K., Peon, J., Zewail, A.H., Biological water at the protein surface: dynamical solvation probed directly with femtosecond resolution. Proc. Natl. Acad. Sci. USA 99 (2002), 1763–1768.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 1763-1768
-
-
Pal, S.K.1
Peon, J.2
Zewail, A.H.3
-
13
-
-
84947751362
-
Biological water or rather water in biology?
-
13 Jungwirth, P., Biological water or rather water in biology?. J. Phys. Chem. Lett. 6 (2015), 2449–2451.
-
(2015)
J. Phys. Chem. Lett.
, vol.6
, pp. 2449-2451
-
-
Jungwirth, P.1
-
14
-
-
78651261665
-
Solid-state ²H NMR shows equivalence of dehydration and osmotic pressures in lipid membrane deformation
-
14 Mallikarjunaiah, K.J., Leftin, A., et al., Brown, M.F., Solid-state ²H NMR shows equivalence of dehydration and osmotic pressures in lipid membrane deformation. Biophys. J. 100 (2011), 98–107.
-
(2011)
Biophys. J.
, vol.100
, pp. 98-107
-
-
Mallikarjunaiah, K.J.1
Leftin, A.2
Brown, M.F.3
-
15
-
-
84921026921
-
Activation of G-protein-coupled receptors correlates with the formation of a continuous internal water pathway
-
15 Yuan, S., Filipek, S., et al., Vogel, H., Activation of G-protein-coupled receptors correlates with the formation of a continuous internal water pathway. Nat. Commun., 5, 2014, 4733.
-
(2014)
Nat. Commun.
, vol.5
, pp. 4733
-
-
Yuan, S.1
Filipek, S.2
Vogel, H.3
-
16
-
-
84884237285
-
The role of water and sodium ions in the activation of the μ-opioid receptor
-
16 Yuan, S., Vogel, H., Filipek, S., The role of water and sodium ions in the activation of the μ-opioid receptor. Angew. Chem. Int. Ed. Engl. 52 (2013), 10112–10115.
-
(2013)
Angew. Chem. Int. Ed. Engl.
, vol.52
, pp. 10112-10115
-
-
Yuan, S.1
Vogel, H.2
Filipek, S.3
-
17
-
-
84926443535
-
Functional water molecules in rhodopsin activation
-
17 Sun, X., Ågren, H., Tu, Y., Functional water molecules in rhodopsin activation. J. Phys. Chem. B 118 (2014), 10863–10873.
-
(2014)
J. Phys. Chem. B
, vol.118
, pp. 10863-10873
-
-
Sun, X.1
Ågren, H.2
Tu, Y.3
-
18
-
-
84924561288
-
Structural biology. Structural basis for chemokine recognition and activation of a viral G protein-coupled receptor
-
18 Burg, J.S., Ingram, J.R., et al., Garcia, K.C., Structural biology. Structural basis for chemokine recognition and activation of a viral G protein-coupled receptor. Science 347 (2015), 1113–1117.
-
(2015)
Science
, vol.347
, pp. 1113-1117
-
-
Burg, J.S.1
Ingram, J.R.2
Garcia, K.C.3
-
19
-
-
84892685953
-
Retinal ligand mobility explains internal hydration and reconciles active rhodopsin structures
-
19 Leioatts, N., Mertz, B., et al., Brown, M.F., Retinal ligand mobility explains internal hydration and reconciles active rhodopsin structures. Biochemistry 53 (2014), 376–385.
-
(2014)
Biochemistry
, vol.53
, pp. 376-385
-
-
Leioatts, N.1
Mertz, B.2
Brown, M.F.3
-
20
-
-
84860448544
-
2A adenosine receptor
-
2A adenosine receptor. Biophys. J. 102 (2012), 2114–2120.
-
(2012)
Biophys. J.
, vol.102
, pp. 2114-2120
-
-
Lee, J.Y.1
Lyman, E.2
-
21
-
-
84935894718
-
6.48 opens a gate for a continuous intrinsic water pathway during activation of the adenosine A2A receptor
-
6.48 opens a gate for a continuous intrinsic water pathway during activation of the adenosine A2A receptor. Angew. Chem. 127 (2015), 566–569.
-
(2015)
Angew. Chem.
, vol.127
, pp. 566-569
-
-
Yuan, S.1
Hu, Z.2
Vogel, H.3
-
23
-
-
84904104510
-
2 adrenergic receptor from active to inactive conformation and its implication for the closed/open state of the water channel: insight from molecular dynamics simulation, free energy calculation and Markov state model analysis
-
2 adrenergic receptor from active to inactive conformation and its implication for the closed/open state of the water channel: insight from molecular dynamics simulation, free energy calculation and Markov state model analysis. Phys. Chem. Chem. Phys. 16 (2014), 15874–15885.
-
(2014)
Phys. Chem. Chem. Phys.
, vol.16
, pp. 15874-15885
-
-
Bai, Q.1
Pérez-Sánchez, H.2
Yao, X.3
-
24
-
-
47049084133
-
Internal hydration increases during activation of the G-protein-coupled receptor rhodopsin
-
24 Grossfield, A., Pitman, M.C., et al., Gawrisch, K., Internal hydration increases during activation of the G-protein-coupled receptor rhodopsin. J. Mol. Biol. 381 (2008), 478–486.
-
(2008)
J. Mol. Biol.
, vol.381
, pp. 478-486
-
-
Grossfield, A.1
Pitman, M.C.2
Gawrisch, K.3
-
25
-
-
77958499673
-
Coupling of retinal, protein, and water dynamics in squid rhodopsin
-
25 Jardón-Valadez, E., Bondar, A.-N., Tobias, D.J., Coupling of retinal, protein, and water dynamics in squid rhodopsin. Biophys. J. 99 (2010), 2200–2207.
-
(2010)
Biophys. J.
, vol.99
, pp. 2200-2207
-
-
Jardón-Valadez, E.1
Bondar, A.-N.2
Tobias, D.J.3
-
26
-
-
78049415021
-
Induced effects of sodium ions on dopaminergic G-protein coupled receptors
-
26 Selent, J., Sanz, F., et al., De Fabritiis, G., Induced effects of sodium ions on dopaminergic G-protein coupled receptors. PLOS Comput. Biol., 6, 2010, e1000884.
-
(2010)
PLOS Comput. Biol.
, vol.6
, pp. e1000884
-
-
Selent, J.1
Sanz, F.2
De Fabritiis, G.3
-
27
-
-
84861961427
-
Structural basis for allosteric regulation of GPCRs by sodium ions
-
27 Liu, W., Chun, E., et al., Stevens, R.C., Structural basis for allosteric regulation of GPCRs by sodium ions. Science 337 (2012), 232–236.
-
(2012)
Science
, vol.337
, pp. 232-236
-
-
Liu, W.1
Chun, E.2
Stevens, R.C.3
-
28
-
-
84873685831
-
Molecular signatures of G-protein-coupled receptors
-
28 Venkatakrishnan, A.J., Deupi, X., et al., Babu, M.M., Molecular signatures of G-protein-coupled receptors. Nature 494 (2013), 185–194.
-
(2013)
Nature
, vol.494
, pp. 185-194
-
-
Venkatakrishnan, A.J.1
Deupi, X.2
Babu, M.M.3
-
29
-
-
70350316769
-
Characterization of water wires inside hydrophobic tubular peptide structures
-
29 Raghavender, U.S., Aravinda, S., et al., Balaram, P., Characterization of water wires inside hydrophobic tubular peptide structures. J. Am. Chem. Soc. 131 (2009), 15130–15132.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 15130-15132
-
-
Raghavender, U.S.1
Aravinda, S.2
Balaram, P.3
-
30
-
-
78650750083
-
Dry amyloid fibril assembly in a yeast prion peptide is mediated by long-lived structures containing water wires
-
30 Reddy, G., Straub, J.E., Thirumalai, D., Dry amyloid fibril assembly in a yeast prion peptide is mediated by long-lived structures containing water wires. Proc. Natl. Acad. Sci. USA 107 (2010), 21459–21464.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21459-21464
-
-
Reddy, G.1
Straub, J.E.2
Thirumalai, D.3
-
31
-
-
84855945574
-
Role of water in protein aggregation and amyloid polymorphism
-
31 Thirumalai, D., Reddy, G., Straub, J.E., Role of water in protein aggregation and amyloid polymorphism. Acc. Chem. Res. 45 (2012), 83–92.
-
(2012)
Acc. Chem. Res.
, vol.45
, pp. 83-92
-
-
Thirumalai, D.1
Reddy, G.2
Straub, J.E.3
-
34
-
-
79960181417
-
2A receptor in complex with ZM241385 and the xanthines XAC and caffeine
-
2A receptor in complex with ZM241385 and the xanthines XAC and caffeine. Structure 19 (2011), 1283–1293.
-
(2011)
Structure
, vol.19
, pp. 1283-1293
-
-
Doré, A.S.1
Robertson, N.2
Marshall, F.H.3
-
35
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
35 Phillips, J.C., Braun, R., et al., Schulten, K., Scalable molecular dynamics with NAMD. J. Comput. Chem. 26 (2005), 1781–1802.
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Schulten, K.3
-
36
-
-
33645786604
-
Importance of the CMAP correction to the CHARMM22 protein force field: dynamics of hen lysozyme
-
36 Buck, M., Bouguet-Bonnet, S., et al., MacKerell, A.D. Jr., Importance of the CMAP correction to the CHARMM22 protein force field: dynamics of hen lysozyme. Biophys. J. 90 (2006), L36–L38.
-
(2006)
Biophys. J.
, vol.90
, pp. L36-L38
-
-
Buck, M.1
Bouguet-Bonnet, S.2
MacKerell, A.D.3
-
37
-
-
79958841703
-
SwissParam: a fast force field generation tool for small organic molecules
-
37 Zoete, V., Cuendet, M.A., et al., Michielin, O., SwissParam: a fast force field generation tool for small organic molecules. J. Comput. Chem. 32 (2011), 2359–2368.
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 2359-2368
-
-
Zoete, V.1
Cuendet, M.A.2
Michielin, O.3
-
38
-
-
80052268628
-
Fluid phase lipid areas and bilayer thicknesses of commonly used phosphatidylcholines as a function of temperature
-
38 Kučerka, N., Nieh, M.-P., Katsaras, J., Fluid phase lipid areas and bilayer thicknesses of commonly used phosphatidylcholines as a function of temperature. Biochim. Biophys. Acta 1808 (2011), 2761–2771.
-
(2011)
Biochim. Biophys. Acta
, vol.1808
, pp. 2761-2771
-
-
Kučerka, N.1
Nieh, M.-P.2
Katsaras, J.3
-
39
-
-
84876333477
-
A molecular dynamics study of the structural and dynamical properties of putative arsenic substituted lipid bilayers
-
39 Tsai, H.-H.G., Lee, J.-B., et al., Juwita, R., A molecular dynamics study of the structural and dynamical properties of putative arsenic substituted lipid bilayers. Int. J. Mol. Sci. 14 (2013), 7702–7715.
-
(2013)
Int. J. Mol. Sci.
, vol.14
, pp. 7702-7715
-
-
Tsai, H.-H.G.1
Lee, J.-B.2
Juwita, R.3
-
40
-
-
0002300553
-
Hydrogen-bond kinetics in liquid water
-
40 Luzar, A., Chandler, D., Hydrogen-bond kinetics in liquid water. Nature 379 (1996), 55–57.
-
(1996)
Nature
, vol.379
, pp. 55-57
-
-
Luzar, A.1
Chandler, D.2
-
41
-
-
84904558493
-
Dynamical transition and heterogeneous hydration dynamics in RNA
-
41 Yoon, J., Lin, J.-C., et al., Thirumalai, D., Dynamical transition and heterogeneous hydration dynamics in RNA. J. Phys. Chem. B 118 (2014), 7910–7919.
-
(2014)
J. Phys. Chem. B
, vol.118
, pp. 7910-7919
-
-
Yoon, J.1
Lin, J.-C.2
Thirumalai, D.3
-
42
-
-
33750177351
-
Centrality in social networks conceptual clarification
-
42 Freeman, L., Centrality in social networks conceptual clarification. Soc. Networks 1 (1979), 215–239.
-
(1979)
Soc. Networks
, vol.1
, pp. 215-239
-
-
Freeman, L.1
-
43
-
-
0035826155
-
Exploring complex networks
-
43 Strogatz, S.H., Exploring complex networks. Nature 410 (2001), 268–276.
-
(2001)
Nature
, vol.410
, pp. 268-276
-
-
Strogatz, S.H.1
-
44
-
-
0034721164
-
Error and attack tolerance of complex networks
-
44 Albert, R., Jeong, H., Barabási, A.L., Error and attack tolerance of complex networks. Nature 406 (2000), 378–382.
-
(2000)
Nature
, vol.406
, pp. 378-382
-
-
Albert, R.1
Jeong, H.2
Barabási, A.L.3
-
45
-
-
13944252976
-
A measure of betweenness centrality based on random walks
-
45 Newman, M., A measure of betweenness centrality based on random walks. Soc. Networks 27 (2005), 39–54.
-
(2005)
Soc. Networks
, vol.27
, pp. 39-54
-
-
Newman, M.1
-
46
-
-
0242720597
-
Uncovering network systems within protein structures
-
46 Greene, L.H., Higman, V.A., Uncovering network systems within protein structures. J. Mol. Biol. 334 (2003), 781–791.
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 781-791
-
-
Greene, L.H.1
Higman, V.A.2
-
47
-
-
8544221118
-
Network analysis of protein structures identifies functional residues
-
47 Amitai, G., Shemesh, A., et al., Pietrokovski, S., Network analysis of protein structures identifies functional residues. J. Mol. Biol. 344 (2004), 1135–1146.
-
(2004)
J. Mol. Biol.
, vol.344
, pp. 1135-1146
-
-
Amitai, G.1
Shemesh, A.2
Pietrokovski, S.3
-
48
-
-
33745461893
-
Residues crucial for maintaining short paths in network communication mediate signaling in proteins
-
48 Del Sol, A., Fujihashi, H., et al., Nussinov, R., Residues crucial for maintaining short paths in network communication mediate signaling in proteins. Mol. Sys. Biol., 2, 2006, 2006.0019.
-
(2006)
Mol. Sys. Biol.
, vol.2
, pp. 2006.0019
-
-
Del Sol, A.1
Fujihashi, H.2
Nussinov, R.3
-
49
-
-
34547909602
-
Assortative mixing in protein contact networks and protein folding kinetics
-
49 Bagler, G., Sinha, S., Assortative mixing in protein contact networks and protein folding kinetics. Bioinformatics 23 (2007), 1760–1767.
-
(2007)
Bioinformatics
, vol.23
, pp. 1760-1767
-
-
Bagler, G.1
Sinha, S.2
-
50
-
-
41349118690
-
Small-world view of the amino acids that play a key role in protein folding
-
50 Vendruscolo, M., Dokholyan, N.V., et al., Karplus, M., Small-world view of the amino acids that play a key role in protein folding. Phys. Rev. E Stat. Nonlin. Soft Matter Phys., 65, 2002, 061910.
-
(2002)
Phys. Rev. E Stat. Nonlin. Soft Matter Phys.
, vol.65
, pp. 061910
-
-
Vendruscolo, M.1
Dokholyan, N.V.2
Karplus, M.3
-
51
-
-
0037173002
-
Topological determinants of protein folding
-
51 Dokholyan, N.V., Li, L., et al., Shakhnovich, E.I., Topological determinants of protein folding. Proc. Natl. Acad. Sci. USA 99 (2002), 8637–8641.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 8637-8641
-
-
Dokholyan, N.V.1
Li, L.2
Shakhnovich, E.I.3
-
52
-
-
0035648637
-
A faster algorithm for betweenness centrality
-
52 Brandes, U., A faster algorithm for betweenness centrality. J. Math. Sociol. 25 (2001), 163–177.
-
(2001)
J. Math. Sociol.
, vol.25
, pp. 163-177
-
-
Brandes, U.1
-
53
-
-
84903720389
-
Probing water density and dynamics in the chaperonin GroEL cavity
-
53 Franck, J.M., Sokolovski, M., et al., Horovitz, A., Probing water density and dynamics in the chaperonin GroEL cavity. J. Am. Chem. Soc. 136 (2014), 9396–9403.
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 9396-9403
-
-
Franck, J.M.1
Sokolovski, M.2
Horovitz, A.3
-
54
-
-
84942342339
-
Anomalously rapid hydration water diffusion dynamics near DNA surfaces
-
54 Franck, J.M., Ding, Y., et al., Han, S., Anomalously rapid hydration water diffusion dynamics near DNA surfaces. J. Am. Chem. Soc. 137 (2015), 12013–12023.
-
(2015)
J. Am. Chem. Soc.
, vol.137
, pp. 12013-12023
-
-
Franck, J.M.1
Ding, Y.2
Han, S.3
-
55
-
-
0030404988
-
HOLE: a program for the analysis of the pore dimensions of ion channel structural models
-
376
-
55 Smart, O.S., Neduvelil, J.G., et al., Sansom, M.S., HOLE: a program for the analysis of the pore dimensions of ion channel structural models. J. Mol. Graph. 14 (1996), 354–360 376.
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 354-360
-
-
Smart, O.S.1
Neduvelil, J.G.2
Sansom, M.S.3
-
57
-
-
84903954822
-
A hydrophobic barrier deep within the inner pore of the TWIK-1 K2P potassium channel
-
57 Aryal, P., Abd-Wahab, F., et al., Tucker, S.J., A hydrophobic barrier deep within the inner pore of the TWIK-1 K2P potassium channel. Nat. Commun., 5, 2014, 4377.
-
(2014)
Nat. Commun.
, vol.5
, pp. 4377
-
-
Aryal, P.1
Abd-Wahab, F.2
Tucker, S.J.3
-
58
-
-
2142715470
-
Water dynamics and dewetting transitions in the small mechanosensitive channel MscS
-
58 Anishkin, A., Sukharev, S., Water dynamics and dewetting transitions in the small mechanosensitive channel MscS. Biophys. J. 86 (2004), 2883–2895.
-
(2004)
Biophys. J.
, vol.86
, pp. 2883-2895
-
-
Anishkin, A.1
Sukharev, S.2
-
59
-
-
84929001600
-
Buried ionizable networks are an ancient hallmark of G protein-coupled receptor activation
-
59 Isom, D.G., Dohlman, H.G., Buried ionizable networks are an ancient hallmark of G protein-coupled receptor activation. Proc. Natl. Acad. Sci. USA 112 (2015), 5702–5707.
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. 5702-5707
-
-
Isom, D.G.1
Dohlman, H.G.2
-
60
-
-
84919650170
-
Hydrophobic gating in ion channels
-
60 Aryal, P., Sansom, M.S., Tucker, S.J., Hydrophobic gating in ion channels. J. Mol. Biol. 427 (2015), 121–130.
-
(2015)
J. Mol. Biol.
, vol.427
, pp. 121-130
-
-
Aryal, P.1
Sansom, M.S.2
Tucker, S.J.3
-
61
-
-
83455222535
-
Electric-field-induced wetting and dewetting in single hydrophobic nanopores
-
61 Powell, M.R., Cleary, L., et al., Siwy, Z.S., Electric-field-induced wetting and dewetting in single hydrophobic nanopores. Nat. Nanotechnol. 6 (2011), 798–802.
-
(2011)
Nat. Nanotechnol.
, vol.6
, pp. 798-802
-
-
Powell, M.R.1
Cleary, L.2
Siwy, Z.S.3
-
62
-
-
34447633368
-
Conformational complexity of G-protein-coupled receptors
-
62 Kobilka, B.K., Deupi, X., Conformational complexity of G-protein-coupled receptors. Trends Pharmacol. Sci. 28 (2007), 397–406.
-
(2007)
Trends Pharmacol. Sci.
, vol.28
, pp. 397-406
-
-
Kobilka, B.K.1
Deupi, X.2
-
63
-
-
84861371612
-
Structural and energetic basis of allostery
-
63 Hilser, V.J., Wrabl, J.O., Motlagh, H.N., Structural and energetic basis of allostery. Annu. Rev. Biophys. 41 (2012), 585–609.
-
(2012)
Annu. Rev. Biophys.
, vol.41
, pp. 585-609
-
-
Hilser, V.J.1
Wrabl, J.O.2
Motlagh, H.N.3
-
64
-
-
84898993517
-
The ensemble nature of allostery
-
64 Motlagh, H.N., Wrabl, J.O., et al., Hilser, V.J., The ensemble nature of allostery. Nature 508 (2014), 331–339.
-
(2014)
Nature
, vol.508
, pp. 331-339
-
-
Motlagh, H.N.1
Wrabl, J.O.2
Hilser, V.J.3
-
65
-
-
0033536602
-
Evolutionarily conserved pathways of energetic connectivity in protein families
-
65 Lockless, S.W., Ranganathan, R., Evolutionarily conserved pathways of energetic connectivity in protein families. Science 286 (1999), 295–299.
-
(1999)
Science
, vol.286
, pp. 295-299
-
-
Lockless, S.W.1
Ranganathan, R.2
-
66
-
-
68749107059
-
Protein sectors: evolutionary units of three-dimensional structure
-
66 Halabi, N., Rivoire, O., et al., Ranganathan, R., Protein sectors: evolutionary units of three-dimensional structure. Cell 138 (2009), 774–786.
-
(2009)
Cell
, vol.138
, pp. 774-786
-
-
Halabi, N.1
Rivoire, O.2
Ranganathan, R.3
-
67
-
-
17044427535
-
Network of dynamically important residues in the open/closed transition in polymerases is strongly conserved
-
67 Zheng, W., Brooks, B.R., et al., Thirumalai, D., Network of dynamically important residues in the open/closed transition in polymerases is strongly conserved. Structure 13 (2005), 565–577.
-
(2005)
Structure
, vol.13
, pp. 565-577
-
-
Zheng, W.1
Brooks, B.R.2
Thirumalai, D.3
-
68
-
-
84898439664
-
Determination of signaling pathways in proteins through network theory: importance of the topology
-
68 Ribeiro, A.A., Ortiz, V., Determination of signaling pathways in proteins through network theory: importance of the topology. J. Chem. Theory Comput. 10 (2014), 1762–1769.
-
(2014)
J. Chem. Theory Comput.
, vol.10
, pp. 1762-1769
-
-
Ribeiro, A.A.1
Ortiz, V.2
-
69
-
-
84896484176
-
Computational approaches to mapping allosteric pathways
-
69 Feher, V.A., Durrant, J.D., et al., Amaro, R.E., Computational approaches to mapping allosteric pathways. Curr. Opin. Struct. Biol. 25 (2014), 98–103.
-
(2014)
Curr. Opin. Struct. Biol.
, vol.25
, pp. 98-103
-
-
Feher, V.A.1
Durrant, J.D.2
Amaro, R.E.3
-
70
-
-
84928311409
-
Protein contact network topology: a natural language for allostery
-
70 Di Paola, L., Giuliani, A., Protein contact network topology: a natural language for allostery. Curr. Opin. Struct. Biol. 31 (2015), 43–48.
-
(2015)
Curr. Opin. Struct. Biol.
, vol.31
, pp. 43-48
-
-
Di Paola, L.1
Giuliani, A.2
-
71
-
-
84969545678
-
Water-mediated energy dynamics in a homodimeric hemoglobin
-
71 Leitner, D.M., Water-mediated energy dynamics in a homodimeric hemoglobin. J. Phys. Chem. B 120 (2016), 4019–4027.
-
(2016)
J. Phys. Chem. B
, vol.120
, pp. 4019-4027
-
-
Leitner, D.M.1
-
72
-
-
84882246260
-
Urea-induced denaturation of preQ1-riboswitch
-
72 Yoon, J., Thirumalai, D., Hyeon, C., Urea-induced denaturation of preQ1-riboswitch. J. Am. Chem. Soc. 135 (2013), 12112–12121.
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 12112-12121
-
-
Yoon, J.1
Thirumalai, D.2
Hyeon, C.3
-
73
-
-
0034730143
-
Solvent dependence of dynamic transitions in protein solutions
-
73 Réat, V., Dunn, R., et al., Smith, J.C., Solvent dependence of dynamic transitions in protein solutions. Proc. Natl. Acad. Sci. USA 97 (2000), 9961–9966.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9961-9966
-
-
Réat, V.1
Dunn, R.2
Smith, J.C.3
-
74
-
-
0029836757
-
Internal molecular motions of bacteriorhodopsin: hydration-induced flexibility studied by quasielastic incoherent neutron scattering using oriented purple membranes
-
74 Fitter, J., Lechner, R.E., et al., Dencher, N.A., Internal molecular motions of bacteriorhodopsin: hydration-induced flexibility studied by quasielastic incoherent neutron scattering using oriented purple membranes. Proc. Natl. Acad. Sci. USA 93 (1996), 7600–7605.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 7600-7605
-
-
Fitter, J.1
Lechner, R.E.2
Dencher, N.A.3
|