메뉴 건너뛰기




Volumn 334, Issue 4, 2003, Pages 781-791

Uncovering network systems within protein structures

Author keywords

Networks; Protein folding; Protein structure; Scale free; Small world

Indexed keywords

AMINO ACID;

EID: 0242720597     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2003.08.061     Document Type: Article
Times cited : (260)

References (43)
  • 1
    • 0035826155 scopus 로고    scopus 로고
    • Exploring complex networks
    • Strogatz S.H. Exploring complex networks. Nature. 410:2001;268-276.
    • (2001) Nature , vol.410 , pp. 268-276
    • Strogatz, S.H.1
  • 2
    • 0036008543 scopus 로고    scopus 로고
    • Scale-free networks in biology: New insights into the fundamentals of evolution?
    • Wolf Y.I., Karev G., Koonin E.V. Scale-free networks in biology: new insights into the fundamentals of evolution? BioEssays. 24:2002;105-109.
    • (2002) BioEssays , vol.24 , pp. 105-109
    • Wolf, Y.I.1    Karev, G.2    Koonin, E.V.3
  • 4
    • 0003737454 scopus 로고    scopus 로고
    • New York: Oxford University Press
    • Kauffman S.A. Investigations. 2000;Oxford University Press, New York.
    • (2000) Investigations
    • Kauffman, S.A.1
  • 7
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • Barabasi A.-L., Albert R. Emergence of scaling in random networks. Science. 286:1999;509-512.
    • (1999) Science , vol.286 , pp. 509-512
    • Barabasi, A.-L.1    Albert, R.2
  • 8
    • 0142077573 scopus 로고    scopus 로고
    • Topology of evolving networks: Local events and universality
    • Albert R., Barabasi A.-L. Topology of evolving networks: local events and universality. Phys. Rev. Letters. 85:2000;5234-5237.
    • (2000) Phys. Rev. Letters , vol.85 , pp. 5234-5237
    • Albert, R.1    Barabasi, A.-L.2
  • 9
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of "small-world" networks
    • Watts D.J., Strogatz S.H. Collective dynamics of "small-world" networks. Nature. 393:1998;440-442.
    • (1998) Nature , vol.393 , pp. 440-442
    • Watts, D.J.1    Strogatz, S.H.2
  • 10
    • 0037012880 scopus 로고    scopus 로고
    • Specificity and stability in topology of protein networks
    • Maslov S., Sneppen K. Specificity and stability in topology of protein networks. Science. 296:2002;910-913.
    • (2002) Science , vol.296 , pp. 910-913
    • Maslov, S.1    Sneppen, K.2
  • 12
    • 0036578795 scopus 로고    scopus 로고
    • Network motifs in the transcriptional regulation network of Eschericia coli
    • Shen-Orr S.S., Milo R., Mangan S., Alon U. Network motifs in the transcriptional regulation network of Eschericia coli. Nature Genet. 31:2002;64-68.
    • (2002) Nature Genet. , vol.31 , pp. 64-68
    • Shen-Orr, S.S.1    Milo, R.2    Mangan, S.3    Alon, U.4
  • 14
    • 0242713700 scopus 로고    scopus 로고
    • The dominance of the population by a selected few: Power-law behavior applies to a wide variety of genomic properties
    • Luscombe N.M., Qian J., Zhang Z., Johnson T., Gerstein M. The dominance of the population by a selected few: power-law behavior applies to a wide variety of genomic properties. Genome Biol. 3:2002;0040.1-0040.7.
    • (2002) Genome Biol. , vol.3 , pp. 00401-00407
    • Luscombe, N.M.1    Qian, J.2    Zhang, Z.3    Johnson, T.4    Gerstein, M.5
  • 15
    • 41349118690 scopus 로고    scopus 로고
    • Small-world view of the amino acid residues that play a key role in protein folding
    • 061910-1-061910-4
    • Vendruscolo M., Dokholyan N.V., Paci E., Karplus M. Small-world view of the amino acid residues that play a key role in protein folding. Phys. Rev. E. 65:2002;. 061910-1-061910-4.
    • (2002) Phys. Rev. E , vol.65
    • Vendruscolo, M.1    Dokholyan, N.V.2    Paci, E.3    Karplus, M.4
  • 17
    • 0035798398 scopus 로고    scopus 로고
    • Protein family and fold occurrence in genomes: Power-law behavior and evolutionary model
    • Qian J., Luscombe N.M., Gerstein M. Protein family and fold occurrence in genomes: power-law behavior and evolutionary model. J. Mol. Biol. 313:2001;673-681.
    • (2001) J. Mol. Biol. , vol.313 , pp. 673-681
    • Qian, J.1    Luscombe, N.M.2    Gerstein, M.3
  • 18
    • 0037079014 scopus 로고    scopus 로고
    • The structure of the protein universe and genome evolution
    • Koonin E.V., Wolf Y.I., Karev G.P. The structure of the protein universe and genome evolution. Nature. 420:2002;218-223.
    • (2002) Nature , vol.420 , pp. 218-223
    • Koonin, E.V.1    Wolf, Y.I.2    Karev, G.P.3
  • 19
    • 0034887573 scopus 로고    scopus 로고
    • Scale-free behavior in protein domain networks
    • Wutchy S. Scale-free behavior in protein domain networks. Mol. Biol. Evol. 18:2001;1694-1702.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1694-1702
    • Wutchy, S.1
  • 21
    • 0017309766 scopus 로고
    • Structural patterns in globular proteins
    • Levitt M., Chothia C. Structural patterns in globular proteins. Nature. 261:1976;552-558.
    • (1976) Nature , vol.261 , pp. 552-558
    • Levitt, M.1    Chothia, C.2
  • 23
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin A.G., Brenner S.E., Hubbard T., Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247:1995;536-540.
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 27
    • 19044389971 scopus 로고    scopus 로고
    • Network topology of a potential energy landscape: A static scale-free network
    • 238701-1-238701-4
    • Doye J.P.K. Network topology of a potential energy landscape: a static scale-free network. Phys. Rev. Letters. 88:2002;. 238701-1-238701-4.
    • (2002) Phys. Rev. Letters , vol.88
    • Doye, J.P.K.1
  • 28
    • 0035895239 scopus 로고    scopus 로고
    • The structure of scientific collaboration networks
    • Newman M.E.J. The structure of scientific collaboration networks. Proc. Natl Acad. Sci. USA. 98:2001;404-409.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 404-409
    • Newman, M.E.J.1
  • 31
    • 0036789926 scopus 로고    scopus 로고
    • Food-web structure and network theory: The role of connectance and size
    • Dunne J.A., Williams R.J., Martinez N.D. Food-web structure and network theory: the role of connectance and size. Proc. Natl Acad. Sci. USA. 99:2002;12917-12922.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 12917-12922
    • Dunne, J.A.1    Williams, R.J.2    Martinez, N.D.3
  • 32
    • 0036578654 scopus 로고    scopus 로고
    • Topological and causal structure of the yeast transcriptional regulatory network
    • Guelzim N., Bottani S., Bourgine P., Kepes F. Topological and causal structure of the yeast transcriptional regulatory network. Nature Genet. 31:2002;60-63.
    • (2002) Nature Genet. , vol.31 , pp. 60-63
    • Guelzim, N.1    Bottani, S.2    Bourgine, P.3    Kepes, F.4
  • 33
    • 0002687371 scopus 로고
    • The small-world problem
    • Milgram S. The small-world problem. Psychol. Today. 2:1967;60-67.
    • (1967) Psychol. Today , vol.2 , pp. 60-67
    • Milgram, S.1
  • 35
    • 0028856785 scopus 로고
    • Optimization of rates of protein folding: The nucleation-condensation mechanism and its implications
    • Fersht A.R. Optimization of rates of protein folding: the nucleation-condensation mechanism and its implications. Proc. Natl Acad. Sci. USA. 92:1995;10869-10873.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 10869-10873
    • Fersht, A.R.1
  • 36
    • 0028024928 scopus 로고
    • Specific nucleus as the transition state for protein folding: Evidence from the lattice model
    • Abkevich V.I., Gutin A.M., Shakhnovich E.I. Specific nucleus as the transition state for protein folding: evidence from the lattice model. Biochemistry. 33:1994;10026-10036.
    • (1994) Biochemistry , vol.33 , pp. 10026-10036
    • Abkevich, V.I.1    Gutin, A.M.2    Shakhnovich, E.I.3
  • 37
    • 0034721164 scopus 로고    scopus 로고
    • Error and attack tolerance in complex networks
    • Albert R., Jeong H., Barabassi A.-L. Error and attack tolerance in complex networks. Nature. 406:2000;378-382.
    • (2000) Nature , vol.406 , pp. 378-382
    • Albert, R.1    Jeong, H.2    Barabassi, A.-L.3
  • 38
    • 0036316089 scopus 로고    scopus 로고
    • Network structure and biodiversity loss in food webs: Robustness increases with connectance
    • Dunne J.A., Williams R.J., Martinez N.D. Network structure and biodiversity loss in food webs: robustness increases with connectance. Ecology Letters. 5:2002;558-567.
    • (2002) Ecology Letters , vol.5 , pp. 558-567
    • Dunne, J.A.1    Williams, R.J.2    Martinez, N.D.3
  • 39
    • 0032189646 scopus 로고    scopus 로고
    • Dictionary of recurrent domains in protein structures
    • Holm L., Sander C. Dictionary of recurrent domains in protein structures. Proteins: Struct. Funct. Genet. 33:1998;88-96.
    • (1998) Proteins: Struct. Funct. Genet. , vol.33 , pp. 88-96
    • Holm, L.1    Sander, C.2
  • 41
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • The CCP4 suite: programs for protein crystallography. Acta Crystallog. sect. D. 50:1994;760-763.
    • (1994) Acta Crystallog. sect. D , vol.50 , pp. 760-763
  • 43
    • 0038718854 scopus 로고    scopus 로고
    • The structure and function of complex networks
    • Newman M.E.J. The structure and function of complex networks. SIAM Rev. 45:2003;167-256.
    • (2003) SIAM Rev. , vol.45 , pp. 167-256
    • Newman, M.E.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.