-
1
-
-
84899694320
-
Principles of genetic circuit design
-
Brophy, J.A.N. and Voigt, C.A. (2014) Principles of genetic circuit design. Nat. Methods, 11, 508-520.
-
(2014)
Nat. Methods
, vol.11
, pp. 508-520
-
-
Brophy, J.A.N.1
Voigt, C.A.2
-
2
-
-
84899838922
-
Synthetic analog and digital circuits for cellular computation and memory
-
Purcell, O. and Lu, T.K. (2014) Synthetic analog and digital circuits for cellular computation and memory. Curr. Opin. Biotechnol., 29, 146-155.
-
(2014)
Curr. Opin. Biotechnol.
, vol.29
, pp. 146-155
-
-
Purcell, O.1
Lu, T.K.2
-
3
-
-
84890178034
-
Advances in genetic circuit design: Novel biochemistries, deep part mining, and precision gene expression
-
Nielsen, A.A.K., Segall-Shapiro, T.H. and Voigt, C.A. (2013) Advances in genetic circuit design: novel biochemistries, deep part mining, and precision gene expression. Curr. Opin. Chem. Biol., 17, 878-892.
-
(2013)
Curr. Opin. Chem. Biol.
, vol.17
, pp. 878-892
-
-
Nielsen, A.A.K.1
Segall-Shapiro, T.H.2
Voigt, C.A.3
-
4
-
-
0032079329
-
The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system
-
Gottesman, S., Roche, E., Zhou, Y. and Sauer, R.T. (1998) The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system. Genes Dev., 12, 1338-1347.
-
(1998)
Genes Dev.
, vol.12
, pp. 1338-1347
-
-
Gottesman, S.1
Roche, E.2
Zhou, Y.3
Sauer, R.T.4
-
5
-
-
0031746834
-
New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria
-
Andersen, J.B., Sternberg, C., Poulsen, L.K., Bjørn, S.P., Givskov, M. and Molin, S. (1998) New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria. Appl. Environ. Microbiol., 64, 2240-2246.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 2240-2246
-
-
Andersen, J.B.1
Sternberg, C.2
Poulsen, L.K.3
Bjørn, S.P.4
Givskov, M.5
Molin, S.6
-
6
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz, M.B. and Leibler, S. (2000) A synthetic oscillatory network of transcriptional regulators. Nature, 403, 335-338.
-
(2000)
Nature
, vol.403
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
7
-
-
57049159362
-
A fast, robust and tunable synthetic gene oscillator
-
Stricker, J., Cookson, S., Bennett, M.R., Mather, W.H., Tsimring, L.S. and Hasty, J. (2008) A fast, robust and tunable synthetic gene oscillator. Nature, 456, 516-519.
-
(2008)
Nature
, vol.456
, pp. 516-519
-
-
Stricker, J.1
Cookson, S.2
Bennett, M.R.3
Mather, W.H.4
Tsimring, L.S.5
Hasty, J.6
-
8
-
-
84924336011
-
Tunable protein degradation in bacteria
-
Cameron, D.E. and Collins, J.J. (2014) Tunable protein degradation in bacteria. Nat. Biotechnol., 32, 1276-1281.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 1276-1281
-
-
Cameron, D.E.1
Collins, J.J.2
-
9
-
-
66249103970
-
Efficient protein depletion by genetically controlled deprotection of a dormant N-degron
-
Taxis, C., Stier, G., Spadaccini, R. and Knop, M. (2009)Efficient protein depletion by genetically controlled deprotection of a dormant N-degron. Mol. Syst. Biol., 5, 267.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 267
-
-
Taxis, C.1
Stier, G.2
Spadaccini, R.3
Knop, M.4
-
10
-
-
84861210856
-
The N-end rule pathway
-
Tasaki, T., Sriram, S.M., Park, K.S. and Kwon, Y.T. (2012) The N-end rule pathway. Annu. Rev. Biochem., 81, 261-289.
-
(2012)
Annu. Rev. Biochem.
, vol.81
, pp. 261-289
-
-
Tasaki, T.1
Sriram, S.M.2
Park, K.S.3
Kwon, Y.T.4
-
11
-
-
37049182804
-
In vivo half-life of a protein is a function of its amino-terminal residue
-
Bachmair, A., Finley, D. and Varshavsky, A. (1986)In vivo half-life of a protein is a function of its amino-terminal residue. Science, 234, 179-186.
-
(1986)
Science
, vol.234
, pp. 179-186
-
-
Bachmair, A.1
Finley, D.2
Varshavsky, A.3
-
12
-
-
80054052318
-
An overview of enzymatic reagents for the removal of affinity tags
-
Waugh, D.S. (2011) An overview of enzymatic reagents for the removal of affinity tags. Protein Expr. Purif., 80, 283-293.
-
(2011)
Protein Expr. Purif.
, vol.80
, pp. 283-293
-
-
Waugh, D.S.1
-
13
-
-
5344232818
-
Efficient site-specific processing of fusion proteins by tobacco vein mottling virus protease in vivo and in vitro
-
Nallamsetty, S., Kapust, R.B., Tözsér, J., Cherry, S., Tropea, J.E., Copeland, T.D. and Waugh, D.S. (2004) Efficient site-specific processing of fusion proteins by tobacco vein mottling virus protease in vivo and in vitro. Protein Expr. Purif., 38, 108-115.
-
(2004)
Protein Expr. Purif.
, vol.38
, pp. 108-115
-
-
Nallamsetty, S.1
Kapust, R.B.2
Tözsér, J.3
Cherry, S.4
Tropea, J.E.5
Copeland, T.D.6
Waugh, D.S.7
-
14
-
-
78349282243
-
Structural determinants of tobacco vein mottling virus protease substrate specificity
-
Sun, P., Austin, B.P., Tözsér, J. and Waugh, D.S. (2010) Structural determinants of tobacco vein mottling virus protease substrate specificity. Protein Sci. Publ. Protein Soc., 19, 2240-2251.
-
(2010)
Protein Sci. Publ. Protein Soc.
, vol.19
, pp. 2240-2251
-
-
Sun, P.1
Austin, B.P.2
Tözsér, J.3
Waugh, D.S.4
-
15
-
-
31344445697
-
DPVweb: A comprehensive database of plant and fungal virus genes and genomes
-
Adams, M.J. and Antoniw, J.F. (2006) DPVweb: a comprehensive database of plant and fungal virus genes and genomes. Nucleic Acids Res., 34, D382-D385.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. D382-D385
-
-
Adams, M.J.1
Antoniw, J.F.2
-
16
-
-
84916202038
-
Modular extracellular sensor architecture for engineering mammalian cell-based devices
-
Daringer, N.M., Dudek, R.M., Schwarz, K.A. and Leonard, J.N. (2014) Modular extracellular sensor architecture for engineering mammalian cell-based devices. ACS Synth. Biol., 3, 892-902.
-
(2014)
ACS Synth. Biol.
, vol.3
, pp. 892-902
-
-
Daringer, N.M.1
Dudek, R.M.2
Schwarz, K.A.3
Leonard, J.N.4
-
17
-
-
84965034230
-
Locked and proteolysis-based transcription activator-like effector (TALE) regulation
-
Lonzaríc, J., Lebar, T., Majerle, A., Maňcek-Keber, M. and Jerala, R. (2016) Locked and proteolysis-based transcription activator-like effector (TALE) regulation. Nucleic Acids Res., 44, 1471-1481.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. 1471-1481
-
-
Lonzaríc, J.1
Lebar, T.2
Majerle, A.3
Maňcek-Keber, M.4
Jerala, R.5
-
18
-
-
38349092683
-
The genetic design of signaling cascades to record receptor activation
-
Barnea, G., Strapps, W., Herrada, G., Berman, Y., Ong, J., Kloss, B., Axel, R. and Lee, K.J. (2008) The genetic design of signaling cascades to record receptor activation. Proc. Natl. Acad. Sci. U.S.A., 105, 64-69.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 64-69
-
-
Barnea, G.1
Strapps, W.2
Herrada, G.3
Berman, Y.4
Ong, J.5
Kloss, B.6
Axel, R.7
Lee, K.J.8
-
19
-
-
77955620283
-
Activation of specific apoptotic caspases with an engineered small-molecule-activated protease
-
Gray, D.C., Mahrus, S. and Wells, J.A. (2010) Activation of specific apoptotic caspases with an engineered small-molecule-activated protease. Cell, 142, 637-646.
-
(2010)
Cell
, vol.142
, pp. 637-646
-
-
Gray, D.C.1
Mahrus, S.2
Wells, J.A.3
-
20
-
-
84909619329
-
Protease-based synthetic sensing and signal amplification
-
Stein, V. and Alexandrov, K. (2014) Protease-based synthetic sensing and signal amplification. Proc. Natl. Acad. Sci. U.S.A., 111, 15934-15939.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 15934-15939
-
-
Stein, V.1
Alexandrov, K.2
-
21
-
-
84952684288
-
Memory and combinatorial logic based on DNA inversions: Dynamics and evolutionary stability
-
Fernandez-Rodriguez, J., Yang, L., Gorochowski, T.E., Gordon, D.B. and Voigt, C.A. (2015) Memory and combinatorial logic based on DNA inversions: Dynamics and evolutionary stability. ACS Synth. Biol., 4, 1361-1372.
-
(2015)
ACS Synth. Biol.
, vol.4
, pp. 1361-1372
-
-
Fernandez-Rodriguez, J.1
Yang, L.2
Gorochowski, T.E.3
Gordon, D.B.4
Voigt, C.A.5
-
22
-
-
84934936070
-
Multi-input CRISPR/Cas genetic circuits that interface host regulatory networks
-
Nielsen, A.A.K. and Voigt, C.A. (2014) Multi-input CRISPR/Cas genetic circuits that interface host regulatory networks. Mol. Syst. Biol., 10, 763.
-
(2014)
Mol. Syst. Biol.
, vol.10
, pp. 763
-
-
Nielsen, A.A.K.1
Voigt, C.A.2
-
23
-
-
84882986957
-
Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system
-
Bikard, D., Jiang, W., Samai, P., Hochschild, A., Zhang, F. and Marraffini, L.A. (2013) Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system. Nucleic Acids Res., 41, 7429-7437.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 7429-7437
-
-
Bikard, D.1
Jiang, W.2
Samai, P.3
Hochschild, A.4
Zhang, F.5
Marraffini, L.A.6
-
24
-
-
78651397316
-
Robust multicellular computing using genetically encoded NOR gates and chemical 'wires'
-
Tamsir, A., Tabor, J.J. and Voigt, C.A. (2011) Robust multicellular computing using genetically encoded NOR gates and chemical 'wires'. Nature, 469, 212-215.
-
(2011)
Nature
, vol.469
, pp. 212-215
-
-
Tamsir, A.1
Tabor, J.J.2
Voigt, C.A.3
-
25
-
-
84897096810
-
Genomic mining of prokaryotic repressors for orthogonal logic gates
-
Stanton, B.C., Nielsen, A.A.K., Tamsir, A., Clancy, K., Peterson, T. and Voigt, C.A. (2014) Genomic mining of prokaryotic repressors for orthogonal logic gates. Nat. Chem. Biol., 10, 99-105.
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 99-105
-
-
Stanton, B.C.1
Nielsen, A.A.K.2
Tamsir, A.3
Clancy, K.4
Peterson, T.5
Voigt, C.A.6
-
26
-
-
0037168510
-
Directed evolution of a genetic circuit
-
Yokobayashi, Y., Weiss, R. and Arnold, F.H. (2002) Directed evolution of a genetic circuit. Proc. Natl. Acad. Sci. U.S.A., 99, 16587-16591.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 16587-16591
-
-
Yokobayashi, Y.1
Weiss, R.2
Arnold, F.H.3
-
27
-
-
2342578714
-
Spatiotemporal control of gene expression with pulse-generating networks
-
Basu, S., Mehreja, R., Thiberge, S., Chen, M.-T. and Weiss, R. (2004) Spatiotemporal control of gene expression with pulse-generating networks. Proc. Natl. Acad. Sci. U.S.A., 101, 6355-6360.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 6355-6360
-
-
Basu, S.1
Mehreja, R.2
Thiberge, S.3
Chen, M.-T.4
Weiss, R.5
-
28
-
-
0037165942
-
Combinatorial synthesis of genetic networks
-
Guet, C.C., Elowitz, M.B., Hsing, W. and Leibler, S. (2002) Combinatorial synthesis of genetic networks. Science, 296, 1466-1470.
-
(2002)
Science
, vol.296
, pp. 1466-1470
-
-
Guet, C.C.1
Elowitz, M.B.2
Hsing, W.3
Leibler, S.4
-
29
-
-
84905376865
-
A 'resource allocator' for transcription based on a highly fragmented T7 RNA polymerase
-
Segall-Shapiro, T.H., Meyer, A.J., Ellington, A.D., Sontag, E.D. and Voigt, C.A. (2014) A 'resource allocator' for transcription based on a highly fragmented T7 RNA polymerase. Mol. Syst. Biol., 10, 742.
-
(2014)
Mol. Syst. Biol.
, vol.10
, pp. 742
-
-
Segall-Shapiro, T.H.1
Meyer, A.J.2
Ellington, A.D.3
Sontag, E.D.4
Voigt, C.A.5
-
30
-
-
84925154941
-
Chapter three-molecular biology of potyviruses
-
Revers, F. and García, J.A. (2015) Chapter Three-Molecular Biology of Potyviruses. Adv. Virus Res., 92, 101-199.
-
(2015)
Adv. Virus Res.
, vol.92
, pp. 101-199
-
-
Revers, F.1
García, J.A.2
-
31
-
-
84870159495
-
Plant virus metagenomics: Biodiversity and ecology
-
Roossinck, M.J. (2012) Plant Virus Metagenomics: Biodiversity and Ecology. Annu. Rev. Genet., 46, 359-369.
-
(2012)
Annu. Rev. Genet.
, vol.46
, pp. 359-369
-
-
Roossinck, M.J.1
-
32
-
-
34547579086
-
OPTIMIZER: A web server for optimizing the codon usage of DNA sequences
-
Puigbò, P., Guzmán, E., Romeu, A. and Garcia-Vallvé, S. (2007) OPTIMIZER: a web server for optimizing the codon usage of DNA sequences. Nucleic Acids Res., 35, W126-W131.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. W126-W131
-
-
Puigbò, P.1
Guzmán, E.2
Romeu, A.3
Garcia-Vallvé, S.4
-
33
-
-
78650599094
-
Targeted protein depletion in Saccharomyces cerevisiae by activation of a bidirectional degron
-
Jungbluth, M., Renicke, C. and Taxis, C. (2010) Targeted protein depletion in Saccharomyces cerevisiae by activation of a bidirectional degron. BMC Syst. Biol., 4, 176.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 176
-
-
Jungbluth, M.1
Renicke, C.2
Taxis, C.3
-
34
-
-
32544432878
-
ClpS is an essential component of the N-end rule pathway in Escherichia coli
-
Erbse, A., Schmidt, R., Bornemann, T., Schneider-Mergener, J., Mogk, A., Zahn, R., Dougan, D.A. and Bukau, B. (2006) ClpS is an essential component of the N-end rule pathway in Escherichia coli. Nature, 439, 753-756.
-
(2006)
Nature
, vol.439
, pp. 753-756
-
-
Erbse, A.1
Schmidt, R.2
Bornemann, T.3
Schneider-Mergener, J.4
Mogk, A.5
Zahn, R.6
Dougan, D.A.7
Bukau, B.8
-
35
-
-
54049111071
-
Tuning the strength of a bacterial N-end rule degradation signal
-
Wang, K.H., Oakes, E.S.C., Sauer, R.T. and Baker, T.A. (2008) Tuning the strength of a bacterial N-end rule degradation signal. J. Biol. Chem., 283, 24600-24607.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 24600-24607
-
-
Wang, K.H.1
Oakes, E.S.C.2
Sauer, R.T.3
Baker, T.A.4
-
36
-
-
0035095521
-
Large-scale purification of a stable form of recombinant tobacco etch virus protease
-
Lucast, L.J., Batey, R.T. and Doudna, J.A. (2001) Large-scale purification of a stable form of recombinant tobacco etch virus protease. BioTechniques, 30, 544-546.
-
(2001)
BioTechniques
, vol.30
, pp. 544-546
-
-
Lucast, L.J.1
Batey, R.T.2
Doudna, J.A.3
-
37
-
-
0032787876
-
Escherichia coli maltose-binding protein is uncommonly effective at promoting the solubility of polypeptides to which it is fused
-
Kapust, R.B. and Waugh, D.S. (1999) Escherichia coli maltose-binding protein is uncommonly effective at promoting the solubility of polypeptides to which it is fused. Protein Sci. Publ. Protein Soc., 8, 1668-1674.
-
(1999)
Protein Sci. Publ. Protein Soc.
, vol.8
, pp. 1668-1674
-
-
Kapust, R.B.1
Waugh, D.S.2
-
38
-
-
34250348569
-
A combined approach to improving large-scale production of tobacco etch virus protease
-
Blommel, P.G. and Fox, B.G. (2007) A combined approach to improving large-scale production of tobacco etch virus protease. Protein Expr. Purif., 55, 53-68.
-
(2007)
Protein Expr. Purif.
, vol.55
, pp. 53-68
-
-
Blommel, P.G.1
Fox, B.G.2
-
39
-
-
0035983443
-
The P1' specificity of tobacco etch virus protease
-
Kapust, R.B., Tözsér, J., Copeland, T.D. and Waugh, D.S. (2002) The P1' specificity of tobacco etch virus protease. Biochem. Biophys. Res. Commun., 294, 949-955.
-
(2002)
Biochem. Biophys. Res. Commun.
, vol.294
, pp. 949-955
-
-
Kapust, R.B.1
Tözsér, J.2
Copeland, T.D.3
Waugh, D.S.4
-
40
-
-
20544432535
-
The TetR family of transcriptional repressors
-
Ramos, J.L., Martínez-Bueno, M., Molina-Henares, A.J., Terán, W., Watanabe, K., Zhang, X., Gallegos, M.T., Brennan, R. and Tobes, R. (2005) The TetR family of transcriptional repressors. Microbiol. Mol. Biol. Rev., 69, 326-356.
-
(2005)
Microbiol. Mol. Biol. Rev.
, vol.69
, pp. 326-356
-
-
Ramos, J.L.1
Martínez-Bueno, M.2
Molina-Henares, A.J.3
Terán, W.4
Watanabe, K.5
Zhang, X.6
Gallegos, M.T.7
Brennan, R.8
Tobes, R.9
-
41
-
-
0023387587
-
Trigger factor: A soluble protein that folds pro-OmpA into a membrane-assembly-competent form
-
Crooke, E. and Wickner, W. (1987) Trigger factor: a soluble protein that folds pro-OmpA into a membrane-assembly-competent form. Proc. Natl. Acad. Sci. U.S.A., 84, 5216-5220.
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 5216-5220
-
-
Crooke, E.1
Wickner, W.2
-
42
-
-
0034050548
-
Overexpression of trigger factor prevents aggregation of recombinant proteins in Escherichia coli
-
Nishihara, K., Kanemori, M., Yanagi, H. and Yura, T. (2000) Overexpression of trigger factor prevents aggregation of recombinant proteins in Escherichia coli. Appl. Environ. Microbiol., 66, 884-889.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 884-889
-
-
Nishihara, K.1
Kanemori, M.2
Yanagi, H.3
Yura, T.4
-
43
-
-
0033589826
-
New fusion protein systems designed to give soluble expression in Escherichia coli
-
Davis, G.D., Elisee, C., Newham, D.M. and Harrison, R.G. (1999) New fusion protein systems designed to give soluble expression in Escherichia coli. Biotechnol. Bioeng., 65, 382-388.
-
(1999)
Biotechnol. Bioeng.
, vol.65
, pp. 382-388
-
-
Davis, G.D.1
Elisee, C.2
Newham, D.M.3
Harrison, R.G.4
-
44
-
-
27644565866
-
Overview and analysis of the polyprotein cleavage sites in the family Potyviridae
-
Adams, M.J., Antoniw, J.F. and Beaudoin, F. (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol. Plant Pathol., 6, 471-487.
-
(2005)
Mol. Plant Pathol.
, vol.6
, pp. 471-487
-
-
Adams, M.J.1
Antoniw, J.F.2
Beaudoin, F.3
-
45
-
-
0033082711
-
Self-processing 2A-polyproteins - A system for co-ordinate expression of multiple proteins in transgenic plants
-
Halpin, C., Cooke, S.E., Barakate, A., Amrani, A.E. and Ryan, M.D. (1999) Self-processing 2A-polyproteins-a system for co-ordinate expression of multiple proteins in transgenic plants. Plant J., 17, 453-459.
-
(1999)
Plant J.
, vol.17
, pp. 453-459
-
-
Halpin, C.1
Cooke, S.E.2
Barakate, A.3
Amrani, A.E.4
Ryan, M.D.5
-
46
-
-
0028058011
-
Foot-and-mouth disease virus 2A oligopeptide mediated cleavage of an artificial polyprotein
-
Ryan, M.D. and Drew, J. (1994) Foot-and-mouth disease virus 2A oligopeptide mediated cleavage of an artificial polyprotein. EMBO J., 13, 928-933.
-
(1994)
EMBO J.
, vol.13
, pp. 928-933
-
-
Ryan, M.D.1
Drew, J.2
-
47
-
-
4143148527
-
Metabolic engineering of ketocarotenoid formation in higher plants
-
Ralley, L., Enfissi, E.M.A., Misawa, N., Schuch, W., Bramley, P.M. and Fraser, P.D. (2004) Metabolic engineering of ketocarotenoid formation in higher plants. Plant J. Cell Mol. Biol., 39, 477-486.
-
(2004)
Plant J. Cell Mol. Biol.
, vol.39
, pp. 477-486
-
-
Ralley, L.1
Enfissi, E.M.A.2
Misawa, N.3
Schuch, W.4
Bramley, P.M.5
Fraser, P.D.6
-
48
-
-
84951293898
-
Coexpression of cellulases in Pichia pastoris as a self-processing protein fusion
-
de Amorim Ará ujo, J., Ferreira, T.C., Rubini, M.R., Duran, A.G.G., De Marco, J.L., de Moraes, L.M.P. and Torres, F.A.G. (2015) Coexpression of cellulases in Pichia pastoris as a self-processing protein fusion. AMB Express, 5, 84.
-
(2015)
AMB Express
, vol.5
, pp. 84
-
-
De Amorim Ará Ujo, J.1
Ferreira, T.C.2
Rubini, M.R.3
Duran, A.G.G.4
De Marco, J.L.5
De Moraes, L.M.P.6
Torres, F.A.G.7
-
49
-
-
58549096370
-
Reprogramming of murine and human somatic cells using a single polycistronic vector
-
Carey, B.W., Markoulaki, S., Hanna, J., Saha, K., Gao, Q., Mitalipova, M. and Jaenisch, R. (2009) Reprogramming of murine and human somatic cells using a single polycistronic vector. Proc. Natl. Acad. Sci. U.S.A., 106, 157-162.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 157-162
-
-
Carey, B.W.1
Markoulaki, S.2
Hanna, J.3
Saha, K.4
Gao, Q.5
Mitalipova, M.6
Jaenisch, R.7
-
50
-
-
45449101649
-
Three heterologous proteins simultaneously expressed from a chimeric potyvirus: Infectivity, stability and the correlation of genome and virion lengths
-
Kelloniemi, J., Mäkinen, K. and Valkonen, J.P.T. (2008) Three heterologous proteins simultaneously expressed from a chimeric potyvirus: infectivity, stability and the correlation of genome and virion lengths. Virus Res., 135, 282-291.
-
(2008)
Virus Res.
, vol.135
, pp. 282-291
-
-
Kelloniemi, J.1
Mäkinen, K.2
Valkonen, J.P.T.3
-
51
-
-
33749536223
-
Rapid high-yield expression of full-size IgG antibodies in plants coinfected with noncompeting viral vectors
-
Giritch, A., Marillonnet, S., Engler, C., van Eldik, G., Botterman, J., Klimyuk, V. and Gleba, Y. (2006) Rapid high-yield expression of full-size IgG antibodies in plants coinfected with noncompeting viral vectors. Proc. Natl. Acad. Sci. U.S.A., 103, 14701-14706.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 14701-14706
-
-
Giritch, A.1
Marillonnet, S.2
Engler, C.3
Van Eldik, G.4
Botterman, J.5
Klimyuk, V.6
Gleba, Y.7
-
52
-
-
84875418865
-
A new, modular mass calibrant for high-mass MALDI-MS
-
Weidmann, S., Barylyuk, K., Nespovitaya, N., Mädler, S. and Zenobi, R. (2013) A new, modular mass calibrant for high-mass MALDI-MS. Anal. Chem., 85, 3425-3432.
-
(2013)
Anal. Chem.
, vol.85
, pp. 3425-3432
-
-
Weidmann, S.1
Barylyuk, K.2
Nespovitaya, N.3
Mädler, S.4
Zenobi, R.5
-
53
-
-
78649652504
-
TEV protease-facilitated stoichiometric delivery of multiple genes using a single expression vector
-
Chen, X., Pham, E. and Truong, K. (2010) TEV protease-facilitated stoichiometric delivery of multiple genes using a single expression vector. Protein Sci. Publ. Protein Soc., 19, 2379-2388.
-
(2010)
Protein Sci. Publ. Protein Soc.
, vol.19
, pp. 2379-2388
-
-
Chen, X.1
Pham, E.2
Truong, K.3
-
54
-
-
84904639399
-
2-Butanol and butanone production in Saccharomyces cerevisiae through combination of a B12 dependent dehydratase and a secondary alcohol dehydrogenase using a TEV-based expression system
-
Ghiaci, P., Norbeck, J. and Larsson, C. (2014) 2-Butanol and butanone production in Saccharomyces cerevisiae through combination of a B12 dependent dehydratase and a secondary alcohol dehydrogenase using a TEV-based expression system. PloS One, 9, e102774.
-
(2014)
PloS One
, vol.9
-
-
Ghiaci, P.1
Norbeck, J.2
Larsson, C.3
-
55
-
-
79251539925
-
Substrate profiling of tobacco etch virus protease using a novel fluorescence-assisted whole-cell assay
-
Kostallas, G., Löfdahl, P.-Å. and Samuelson, P. (2011) Substrate profiling of tobacco etch virus protease using a novel fluorescence-assisted whole-cell assay. PLoS One, 6, e16136.
-
(2011)
PLoS One
, vol.6
-
-
Kostallas, G.1
Löfdahl, P.-Å.2
Samuelson, P.3
-
56
-
-
84866953925
-
Modular control of multiple pathways using engineered orthogonal T7 polymerases
-
Temme, K., Hill, R., Segall-Shapiro, T.H., Moser, F. and Voigt, C.A. (2012) Modular control of multiple pathways using engineered orthogonal T7 polymerases. Nucleic Acids Res., 40, 8773-8781.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 8773-8781
-
-
Temme, K.1
Hill, R.2
Segall-Shapiro, T.H.3
Moser, F.4
Voigt, C.A.5
-
57
-
-
84860803588
-
Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca
-
Temme, K., Zhao, D. and Voigt, C.A. (2012) Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca. Proc. Natl. Acad. Sci. U.S.A., 109, 7085-7090.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 7085-7090
-
-
Temme, K.1
Zhao, D.2
Voigt, C.A.3
-
58
-
-
79960683356
-
The N-end rule pathway and regulation by proteolysis
-
Varshavsky, A. (2011) The N-end rule pathway and regulation by proteolysis. Protein Sci. Publ. Protein Soc., 20, 1298-1345.
-
(2011)
Protein Sci. Publ. Protein Soc.
, vol.20
, pp. 1298-1345
-
-
Varshavsky, A.1
-
59
-
-
22144443131
-
Nonlinear protein degradation and the function of genetic circuits
-
Buchler, N.E., Gerland, U. and Hwa, T. (2005) Nonlinear protein degradation and the function of genetic circuits. Proc. Natl. Acad. Sci. U.S.A., 102, 9559-9564.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 9559-9564
-
-
Buchler, N.E.1
Gerland, U.2
Hwa, T.3
-
60
-
-
16344364226
-
Signal-amplifying genetic circuit enables in vivo observation of weak promoter activation in the Rhl quorum sensing system
-
Karig, D. and Weiss, R. (2005) Signal-amplifying genetic circuit enables in vivo observation of weak promoter activation in the Rhl quorum sensing system. Biotechnol. Bioeng., 89, 709-718.
-
(2005)
Biotechnol. Bioeng.
, vol.89
, pp. 709-718
-
-
Karig, D.1
Weiss, R.2
-
61
-
-
17144456808
-
Positive feedback in eukaryotic gene networks: Cell differentiation by graded to binary response conversion
-
Becskei, A., Séraphin, B. and Serrano, L. (2001) Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion. EMBO J., 20, 2528-2535.
-
(2001)
EMBO J.
, vol.20
, pp. 2528-2535
-
-
Becskei, A.1
Séraphin, B.2
Serrano, L.3
-
62
-
-
34848885875
-
Construction and engineering of positive feedback loops
-
Sayut, D.J., Niu, Y. and Sun, L. (2006) Construction and engineering of positive feedback loops. ACS Chem. Biol., 1, 692-696.
-
(2006)
ACS Chem. Biol.
, vol.1
, pp. 692-696
-
-
Sayut, D.J.1
Niu, Y.2
Sun, L.3
-
63
-
-
77649220197
-
Noise can induce bimodality in positive transcriptional feedback loops without bistability
-
To, T.-L. and Maheshri, N. (2010) Noise can induce bimodality in positive transcriptional feedback loops without bistability. Science, 327, 1142-1145.
-
(2010)
Science
, vol.327
, pp. 1142-1145
-
-
To, T.-L.1
Maheshri, N.2
-
64
-
-
84908180743
-
Sensitive detection of proteasomal activation using the Deg-On mammalian synthetic gene circuit
-
Zhao, W., Bonem, M., McWhite, C., Silberg, J.J. and Segatori, L. (2014) Sensitive detection of proteasomal activation using the Deg-On mammalian synthetic gene circuit. Nat. Commun., 5, 3612.
-
(2014)
Nat. Commun.
, vol.5
, pp. 3612
-
-
Zhao, W.1
Bonem, M.2
McWhite, C.3
Silberg, J.J.4
Segatori, L.5
-
65
-
-
84861865655
-
Rewritable digital data storage in live cells via engineered control of recombination directionality
-
Bonnet, J., Subsoontorn, P. and Endy, D. (2012) Rewritable digital data storage in live cells via engineered control of recombination directionality. Proc. Natl. Acad. Sci. U.S.A., 109, 8884-8889.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 8884-8889
-
-
Bonnet, J.1
Subsoontorn, P.2
Endy, D.3
-
66
-
-
84877607428
-
Amplifying genetic logic gates
-
Bonnet, J., Yin, P., Ortiz, M.E., Subsoontorn, P. and Endy, D. (2013) Amplifying genetic logic gates. Science, 340, 599-603.
-
(2013)
Science
, vol.340
, pp. 599-603
-
-
Bonnet, J.1
Yin, P.2
Ortiz, M.E.3
Subsoontorn, P.4
Endy, D.5
-
67
-
-
84925225805
-
Permanent genetic memory with <1-byte capacity
-
Yang, L., Nielsen, A.A.K., Fernandez-Rodriguez, J., McClune, C.J., Laub, M.T., Lu, T.K. and Voigt, C.A. (2014) Permanent genetic memory with <1-byte capacity. Nat. Methods, 11, 1261-1266.
-
(2014)
Nat. Methods
, vol.11
, pp. 1261-1266
-
-
Yang, L.1
Nielsen, A.A.K.2
Fernandez-Rodriguez, J.3
McClune, C.J.4
Laub, M.T.5
Lu, T.K.6
Voigt, C.A.7
-
68
-
-
84929580603
-
Synthetic tunable amplifying buffer circuit in E. Coli
-
Nilgiriwala, K.S., Jiménez, J., Rivera, P.M. and Del Vecchio, D. (2015) Synthetic tunable amplifying buffer circuit in E. coli. ACS Synth. Biol., 4, 577-584.
-
(2015)
ACS Synth. Biol.
, vol.4
, pp. 577-584
-
-
Nilgiriwala, K.S.1
Jiménez, J.2
Rivera, P.M.3
Del Vecchio, D.4
-
69
-
-
84859206826
-
A regulatory role for repeated decoy transcription factor binding sites in target gene expression
-
Lee, T.H. and Maheshri, N. (2012) A regulatory role for repeated decoy transcription factor binding sites in target gene expression. Mol. Syst. Biol., 8, 576.
-
(2012)
Mol. Syst. Biol.
, vol.8
, pp. 576
-
-
Lee, T.H.1
Maheshri, N.2
-
70
-
-
34548668642
-
Quantitative characteristics of gene regulation by small RNA
-
Levine, E., Zhang, Z., Kuhlman, T. and Hwa, T. (2007) Quantitative characteristics of gene regulation by small RNA. PLoS Biol., 5, e229.
-
(2007)
PLoS Biol.
, vol.5
, pp. e229
-
-
Levine, E.1
Zhang, Z.2
Kuhlman, T.3
Hwa, T.4
-
71
-
-
84875265625
-
Metabolic engineering of muconic acid production in Saccharomyces cerevisiae
-
Curran, K.A., Leavitt, J.M., Karim, A.S. and Alper, H.S. (2013) Metabolic engineering of muconic acid production in Saccharomyces cerevisiae. Metab. Eng., 15, 55-66.
-
(2013)
Metab. Eng.
, vol.15
, pp. 55-66
-
-
Curran, K.A.1
Leavitt, J.M.2
Karim, A.S.3
Alper, H.S.4
-
72
-
-
84937604735
-
The development and characterization of synthetic minimal yeast promoters
-
Redden, H. and Alper, H.S. (2015) The development and characterization of synthetic minimal yeast promoters. Nat. Commun., 6, 7810.
-
(2015)
Nat. Commun.
, vol.6
, pp. 7810
-
-
Redden, H.1
Alper, H.S.2
-
73
-
-
56949098506
-
Molecular titration and ultrasensitivity in regulatory networks
-
Buchler, N.E. and Louis, M. (2008) Molecular titration and ultrasensitivity in regulatory networks. J. Mol. Biol., 384, 1106-1119.
-
(2008)
J. Mol. Biol.
, vol.384
, pp. 1106-1119
-
-
Buchler, N.E.1
Louis, M.2
-
74
-
-
67149138163
-
Protein sequestration generates a flexible ultrasensitive response in a genetic network
-
Buchler, N.E. and Cross, F.R. (2009) Protein sequestration generates a flexible ultrasensitive response in a genetic network. Mol. Syst. Biol., 5, 272.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 272
-
-
Buchler, N.E.1
Cross, F.R.2
-
75
-
-
84868279233
-
Sequestration-based bistability enables tuning of the switching boundaries and design of a latch
-
Chen, D. and Arkin, A.P. (2012) Sequestration-based bistability enables tuning of the switching boundaries and design of a latch. Mol. Syst. Biol., 8, 620.
-
(2012)
Mol. Syst. Biol.
, vol.8
, pp. 620
-
-
Chen, D.1
Arkin, A.P.2
-
76
-
-
84889250030
-
Design of orthogonal genetic switches based on a crosstalk map of s, anti-s, and promoters
-
Rhodius, V.A., Segall-Shapiro, T.H., Sharon, B.D., Ghodasara, A., Orlova, E., Tabakh, H., Burkhardt, D.H., Clancy, K., Peterson, T.C., Gross, C.A. et al. (2013) Design of orthogonal genetic switches based on a crosstalk map of s, anti-s, and promoters. Mol. Syst. Biol., 9, 702.
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 702
-
-
Rhodius, V.A.1
Segall-Shapiro, T.H.2
Sharon, B.D.3
Ghodasara, A.4
Orlova, E.5
Tabakh, H.6
Burkhardt, D.H.7
Clancy, K.8
Peterson, T.C.9
Gross, C.A.10
-
77
-
-
34547130813
-
Functional sequestration of transcription factor activity by repetitive DNA
-
Liu, X., Wu, B., Szary, J., Kofoed, E.M. and Schaufele, F. (2007) Functional sequestration of transcription factor activity by repetitive DNA. J. Biol. Chem., 282, 20868-20876.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 20868-20876
-
-
Liu, X.1
Wu, B.2
Szary, J.3
Kofoed, E.M.4
Schaufele, F.5
-
78
-
-
34250178398
-
Export of FT protein from phloem companion cells is sufficient for floral induction in arabidopsis
-
Mathieu, J., Warthmann, N., Küttner, F. and Schmid, M. (2007) Export of FT protein from phloem companion cells is sufficient for floral induction in arabidopsis. Curr. Biol., 17, 1055-1060.
-
(2007)
Curr. Biol.
, vol.17
, pp. 1055-1060
-
-
Mathieu, J.1
Warthmann, N.2
Küttner, F.3
Schmid, M.4
-
79
-
-
33751217186
-
Monitoring regulated protein-protein interactions using split TEV
-
Wehr, M.C., Laage, R., Bolz, U., Fischer, T.M., Gr ünewald, S., Scheek, S., Bach, A., Nave, K.-A. and Rossner, M.J. (2006) Monitoring regulated protein-protein interactions using split TEV. Nat. Methods, 3, 985-993.
-
(2006)
Nat. Methods
, vol.3
, pp. 985-993
-
-
Wehr, M.C.1
Laage, R.2
Bolz, U.3
Fischer, T.M.4
Gr Ünewald, S.5
Scheek, S.6
Bach, A.7
Nave, K.-A.8
Rossner, M.J.9
-
80
-
-
38849173178
-
Cell-type-specific TEV protease cleavage reveals cohesin functions in Drosophila neurons
-
Pauli, A., Althoff, F., Oliveira, R.A., Heidmann, S., Schuldiner, O., Lehner, C.F., Dickson, B.J. and Nasmyth, K. (2008) Cell-type-specific TEV protease cleavage reveals cohesin functions in Drosophila neurons. Dev. Cell, 14, 239-251.
-
(2008)
Dev. Cell
, vol.14
, pp. 239-251
-
-
Pauli, A.1
Althoff, F.2
Oliveira, R.A.3
Heidmann, S.4
Schuldiner, O.5
Lehner, C.F.6
Dickson, B.J.7
Nasmyth, K.8
-
81
-
-
70449449854
-
Rapid modification of proteins using a rapamycin-inducible tobacco etch virus protease system
-
Williams, D.J., Puhl, H.L. and Ikeda, S.R. (2009) Rapid modification of proteins using a rapamycin-inducible tobacco etch virus protease system. PloS One, 4, e7474.
-
(2009)
PloS One
, vol.4
, pp. e7474
-
-
Williams, D.J.1
Puhl, H.L.2
Ikeda, S.R.3
-
82
-
-
84894148049
-
Genetic encoding of photocaged cysteine allows photoactivation of tev protease in live mammalian cells
-
Nguyen, D.P., Mahesh, M., Elsässer, S.J., Hancock, S.M., Uttamapinant, C. and Chin, J.W. (2014) Genetic Encoding of Photocaged Cysteine Allows Photoactivation of TEV Protease in Live Mammalian Cells. J. Am. Chem. Soc., 136, 2240-2243.
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 2240-2243
-
-
Nguyen, D.P.1
Mahesh, M.2
Elsässer, S.J.3
Hancock, S.M.4
Uttamapinant, C.5
Chin, J.W.6
-
83
-
-
84910067176
-
Chemical Biology Strategies for post-translational control of protein function
-
Rakhit, R., Navarro, R. and Wandless, T.J. (2014) Chemical Biology Strategies for post-translational control of protein function. Chem. Biol., 21, 1238-1252.
-
(2014)
Chem. Biol.
, vol.21
, pp. 1238-1252
-
-
Rakhit, R.1
Navarro, R.2
Wandless, T.J.3
-
84
-
-
84865283318
-
Post-translational tools expand the scope of synthetic biology
-
Olson, E.J. and Tabor, J.J. (2012) Post-translational tools expand the scope of synthetic biology. Curr. Opin. Chem. Biol., 16, 300-306.
-
(2012)
Curr. Opin. Chem. Biol.
, vol.16
, pp. 300-306
-
-
Olson, E.J.1
Tabor, J.J.2
-
85
-
-
84869476328
-
Ribozyme-based insulator parts buffer synthetic circuits from genetic context
-
Lou, C., Stanton, B., Chen, Y.-J., Munsky, B. and Voigt, C.A. (2012) Ribozyme-based insulator parts buffer synthetic circuits from genetic context. Nat. Biotechnol., 30, 1137-1142.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 1137-1142
-
-
Lou, C.1
Stanton, B.2
Chen, Y.-J.3
Munsky, B.4
Voigt, C.A.5
-
86
-
-
84963568291
-
Genetic circuit design automation
-
Nielsen, A.A.K., Der, B.S., Shin, J., Vaidyanathan, P., Paralanov, V., Strychalski, E.A., Ross, D., Densmore, D. and Voigt, C.A. (2016) Genetic circuit design automation. Science, 352, aac7341.
-
(2016)
Science
, vol.352
, pp. aac7341
-
-
Nielsen, A.A.K.1
Der, B.S.2
Shin, J.3
Vaidyanathan, P.4
Paralanov, V.5
Strychalski, E.A.6
Ross, D.7
Densmore, D.8
Voigt, C.A.9
|