-
1
-
-
0030887314
-
Virus-encoded proteinases of the picornavirus super-group
-
Ryan MD, Flint M (1997) Virus-encoded proteinases of the picornavirus super-group. J Gen Virol 78 (Part 4):699-723.
-
(1997)
J Gen Virol
, vol.78
, Issue.PART 4
, pp. 699-723
-
-
Ryan, M.D.1
Flint, M.2
-
2
-
-
0025011269
-
Structure, function and evolution of picornaviruses
-
Stanway G (1990) Structure, function and evolution of picornaviruses. J Gen Virol 71 (Part 11):2483-2501.
-
(1990)
J Gen Virol
, vol.71
, Issue.PART 11
, pp. 2483-2501
-
-
Stanway, G.1
-
3
-
-
0023046857
-
The nucleotide sequence of tobacco vein mottling virus RNA
-
Domier LL, Franklin KM, Shahabuddin M, Hellmann GM, Overmeyer JH, Hiremath ST, Siaw MF, Lomonossoff GP, Shaw JG, Rhoads RE (1986) The nucleotide sequence of tobacco vein mottling virus RNA. Nucleic Acids Res 14:5417-5430.
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 5417-5430
-
-
Domier, L.L.1
Franklin, K.M.2
Shahabuddin, M.3
Hellmann, G.M.4
Overmeyer, J.H.5
Hiremath, S.T.6
Siaw, M.F.7
Lomonossoff, G.P.8
Shaw, J.G.9
Rhoads, R.E.10
-
4
-
-
0023991716
-
In vitro analysis of tobacco vein mottling virus NIa cistron: Evidence for a virus-encoded protease
-
Hellmann GM, Shaw JG, Rhoads RE (1988) In vitro analysis of tobacco vein mottling virus NIa cistron: evidence for a virus-encoded protease. Virology 163:554-562.
-
(1988)
Virology
, vol.163
, pp. 554-562
-
-
Hellmann, G.M.1
Shaw, J.G.2
Rhoads, R.E.3
-
5
-
-
0032813289
-
The structures of picornaviral proteinases
-
Seipelt J, Guarne A, Bergmann E, James M, Sommergruber W, Fita I, Skern T (1999) The structures of picornaviral proteinases. Virus Res 62:159-168.
-
(1999)
Virus Res
, vol.62
, pp. 159-168
-
-
Seipelt, J.1
Guarne, A.2
Bergmann, E.3
James, M.4
Sommergruber, W.5
Fita, I.6
Skern, T.7
-
6
-
-
0034732425
-
Molecular cloning, expression, and purification of nuclear inclusion A protease from tobacco vein mottling virus
-
Hwang DC, Kim DH, Kang BH, Song BD, Choi KY (2000) Molecular cloning, expression, and purification of nuclear inclusion A protease from tobacco vein mottling virus. Mol Cells 10:148-155.
-
(2000)
Mol Cells
, vol.10
, pp. 148-155
-
-
Hwang, D.C.1
Kim, D.H.2
Kang, B.H.3
Song, B.D.4
Choi, K.Y.5
-
7
-
-
0034739529
-
Characterization of active-site residues of the NIa protease from tobacco vein mottling virus
-
Hwang DC, Kim DH, Lee JS, Kang BH, Han J, Kim W, Song BD, Choi KY (2000) Characterization of active-site residues of the NIa protease from tobacco vein mottling virus. Mol Cells 10:505-511.
-
(2000)
Mol Cells
, vol.10
, pp. 505-511
-
-
Hwang, D.C.1
Kim, D.H.2
Lee, J.S.3
Kang, B.H.4
Han, J.5
Kim, W.6
Song, B.D.7
Choi, K.Y.8
-
8
-
-
0034732435
-
Proteolytic processing of oligopeptides containing the target sequences by the recombinant tobacco vein mottling virus NIa proteinase
-
Yoon HY, Hwang DC, Choi KY, Song BD (2000) Proteolytic processing of oligopeptides containing the target sequences by the recombinant tobacco vein mottling virus NIa proteinase. Mol Cells 10:213-219.
-
(2000)
Mol Cells
, vol.10
, pp. 213-219
-
-
Yoon, H.Y.1
Hwang, D.C.2
Choi, K.Y.3
Song, B.D.4
-
9
-
-
5344232818
-
Efficient site-specific processing of fusion proteins by tobacco vein mottling virus protease in vivo and in vitro
-
Nallamsetty S, Kapust RB, Tozser J, Cherry S, Tropea JE, Copeland TD, Waugh DS (2004) Efficient site-specific processing of fusion proteins by tobacco vein mottling virus protease in vivo and in vitro. Protein Expr Purif 38:108-115.
-
(2004)
Protein Expr Purif
, vol.38
, pp. 108-115
-
-
Nallamsetty, S.1
Kapust, R.B.2
Tozser, J.3
Cherry, S.4
Tropea, J.E.5
Copeland, T.D.6
Waugh, D.S.7
-
10
-
-
12544254189
-
Comparison of the substrate specificity of two potyvirus proteases
-
Tozser J, Tropea JE, Cherry S, Bagossi P, Copeland TD, Wlodawer A, Waugh DS (2005) Comparison of the substrate specificity of two potyvirus proteases. FEBS J 272:514-523.
-
(2005)
FEBS J
, vol.272
, pp. 514-523
-
-
Tozser, J.1
Tropea, J.E.2
Cherry, S.3
Bagossi, P.4
Copeland, T.D.5
Wlodawer, A.6
Waugh, D.S.7
-
11
-
-
33646579179
-
An expression vector tailored for large-scale, high-throughput purification of recombinant proteins
-
Donnelly MI, Zhou M, Millard CS, Clancy S, Stols L, Eschenfeldt WH, Collart FR, Joachimiak A (2006) An expression vector tailored for large-scale, high-throughput purification of recombinant proteins. Protein Expr Purif 47:446-454.
-
(2006)
Protein Expr Purif
, vol.47
, pp. 446-454
-
-
Donnelly, M.I.1
Zhou, M.2
Millard, C.S.3
Clancy, S.4
Stols, L.5
Eschenfeldt, W.H.6
Collart, F.R.7
Joachimiak, A.8
-
12
-
-
34247465669
-
Protein crystallization by surface entropy reduction: Optimization of the SER strategy
-
Cooper DR, Boczek T, Grelewska K, Pinkowska M, Sikorska M, Zawadzki M, Derewenda Z (2007) Protein crystallization by surface entropy reduction: optimization of the SER strategy. Acta Crystallogr D Biol Crystallogr 63:636-645.
-
(2007)
Acta Crystallogr D Biol Crystallogr
, vol.63
, pp. 636-645
-
-
Cooper, D.R.1
Boczek, T.2
Grelewska, K.3
Pinkowska, M.4
Sikorska, M.5
Zawadzki, M.6
Derewenda, Z.7
-
13
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, et al. (1998) Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr 54:905-921.
-
(1998)
Acta Crystallogr D Biol Crystallogr
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
14
-
-
0037184981
-
Structural basis for the substrate specificity of tobacco etch virus protease
-
Phan J, Zdanov A, Evdokimov AG, Tropea JE, Peters HKIII,, Kapust RB, Li M, Wlodawer A, Waugh DS (2002) Structural basis for the substrate specificity of tobacco etch virus protease. J Biol Chem 277:50564-50572.
-
(2002)
J Biol Chem
, vol.277
, pp. 50564-50572
-
-
Phan, J.1
Zdanov, A.2
Evdokimov, A.G.3
Tropea, J.E.4
Peters III, H.K.5
Kapust, R.B.6
Li, M.7
Wlodawer, A.8
Waugh, D.S.9
-
15
-
-
0029000550
-
Expression and purification of a recombinant tobacco etch virus NIa proteinase: Biochemical analyses of the full-length and a naturally occurring truncated proteinase form
-
Parks TD, Howard ED, Wolpert TJ, Arp DJ, Dougherty WG (1995) Expression and purification of a recombinant tobacco etch virus NIa proteinase: biochemical analyses of the full-length and a naturally occurring truncated proteinase form. Virology 210:194-201.
-
(1995)
Virology
, vol.210
, pp. 194-201
-
-
Parks, T.D.1
Howard, E.D.2
Wolpert, T.J.3
Arp, D.J.4
Dougherty, W.G.5
-
16
-
-
0035711194
-
Tobacco etch virus protease: Mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency
-
Kapust RB, Tozser J, Fox JD, Anderson DE, Cherry S, Copeland TD, Waugh DS (2001) Tobacco etch virus protease: mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency. Protein Eng 14:993-1000.
-
(2001)
Protein Eng
, vol.14
, pp. 993-1000
-
-
Kapust, R.B.1
Tozser, J.2
Fox, J.D.3
Anderson, D.E.4
Cherry, S.5
Copeland, T.D.6
Waugh, D.S.7
-
17
-
-
0024004266
-
Biochemical and mutational analysis of a plant virus polyprotein cleavage site
-
Dougherty WG, Carrington JC, Cary SM, Parks TD (1988) Biochemical and mutational analysis of a plant virus polyprotein cleavage site. EMBO J 7:1281-1287.
-
(1988)
EMBO J
, vol.7
, pp. 1281-1287
-
-
Dougherty, W.G.1
Carrington, J.C.2
Cary, S.M.3
Parks, T.D.4
-
18
-
-
0027437292
-
Internal cleavage and trans-proteolytic activities of the VPg-proteinase (NIa) of tobacco etch potyvirus in vivo
-
Carrington JC, Haldeman R, Dolja VV, Restrepo-Hartwig MA (1993) Internal cleavage and trans-proteolytic activities of the VPg-proteinase (NIa) of tobacco etch potyvirus in vivo. J Virol 67:6995-7000.
-
(1993)
J Virol
, vol.67
, pp. 6995-7000
-
-
Carrington, J.C.1
Haldeman, R.2
Dolja, V.V.3
Restrepo-Hartwig, M.A.4
-
19
-
-
0024708229
-
Molecular genetic analysis of a plant virus polyprotein cleavage site: A model
-
Dougherty WG, Cary SM, Parks TD (1989) Molecular genetic analysis of a plant virus polyprotein cleavage site: a model. Virology 171:356-364.
-
(1989)
Virology
, vol.171
, pp. 356-364
-
-
Dougherty, W.G.1
Cary, S.M.2
Parks, T.D.3
-
20
-
-
0027995683
-
Detection, delineation, measurement and display of cavities in macromolecular structures
-
Kleywegt GJ, Jones TA (1994) Detection, delineation, measurement and display of cavities in macromolecular structures. Acta Crystallogr D Biol Crystallogr 50:178-185.
-
(1994)
Acta Crystallogr D Biol Crystallogr
, vol.50
, pp. 178-185
-
-
Kleywegt, G.J.1
Jones, T.A.2
-
21
-
-
0023190594
-
Small nuclear inclusion protein encoded by a plant potyvirus genome is a protease
-
Carrington JC, Dougherty WG (1987) Small nuclear inclusion protein encoded by a plant potyvirus genome is a protease. J Virol 61:2540-2548.
-
(1987)
J Virol
, vol.61
, pp. 2540-2548
-
-
Carrington, J.C.1
Dougherty, W.G.2
-
23
-
-
77951296508
-
Cleavable C-terminal His-tag vectors for structure determination
-
Eschenfeldt WH, Maltseva N, Stols L, Donnelly MI, Gu M, Nocek B, Tan K, Kim Y, Joachimiak A (2010) Cleavable C-terminal His-tag vectors for structure determination. J Struct Funct Genomics 11:31-39.
-
(2010)
J Struct Funct Genomics
, vol.11
, pp. 31-39
-
-
Eschenfeldt, W.H.1
Maltseva, N.2
Stols, L.3
Donnelly, M.I.4
Gu, M.5
Nocek, B.6
Tan, K.7
Kim, Y.8
Joachimiak, A.9
-
24
-
-
0036006256
-
Three-dimensional structure of the type III secretion chaperone SycE from Yersinia pestis
-
DOI 10.1107/S090744490200015X
-
Evdokimov AG, Tropea JE, Routzahn KM, Waugh DS (2002) Three-dimensional structure of the type III secretion chaperone SycE from Yersinia pestis. Acta Crystallogr D Biol Crystallogr 58:398-406. (Pubitemid 34248849)
-
(2002)
Acta Crystallographica Section D: Biological Crystallography
, vol.58
, Issue.3
, pp. 398-406
-
-
Evdokimov, A.G.1
Tropea, J.E.2
Routzahn, K.M.3
Waugh, D.S.4
-
25
-
-
33847247484
-
A generic method for the production of recombinant proteins in Escherichia coli using a dual hexahistidine-maltose-binding protein affinity tag
-
DOI 10.1385/1-59745-209-2:1, Macromolecular Crystallography Protocols, Volume 1: Preparation and Crystallizationof Macromolecules
-
Tropea JE, Cherry S, Nallamsetty S, Bignon C, Waugh DS (2007) A generic method for the production of recombinant proteins in Escherichia coli using a dual hexahistidine-maltose-binding protein affinity tag. Methods Mol Biol 363:1-19. (Pubitemid 350183142)
-
(2007)
Methods in Molecular Biology
, vol.363
, pp. 1-19
-
-
Tropea, J.E.1
Cherry, S.2
Nallamsetty, S.3
Bignon, C.4
Waugh, D.S.5
-
26
-
-
0024520745
-
Site-directed mutagenesis by overlap extension using the polymerase chain reaction
-
DOI 10.1016/0378-1119(89)90358-2
-
Ho SN, Hunt HD, Horton RM, Pullen JK, Pease LR (1989) Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77:51-59. (Pubitemid 19125653)
-
(1989)
Gene
, vol.77
, Issue.1
, pp. 51-59
-
-
Ho, S.N.1
Hunt, H.D.2
Horton, R.M.3
Pullen, J.K.4
Pease, L.R.5
-
27
-
-
84934444524
-
Expression and purification of soluble His(6)-tagged TEV protease
-
Tropea JE, Cherry S, Waugh DS (2009) Expression and purification of soluble His(6)-tagged TEV protease. Methods Mol Biol 498:297-307.
-
(2009)
Methods Mol Biol
, vol.498
, pp. 297-307
-
-
Tropea, J.E.1
Cherry, S.2
Waugh, D.S.3
-
28
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276:307-326. (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
29
-
-
20444374108
-
Crystal structure of tobacco etch virus protease shows the protein C terminus bound within the active site
-
DOI 10.1016/j.jmb.2005.04.013, PII S0022283605004122
-
Nunn CM, Jeeves M, Cliff MJ, Urquhart GT, George RR, Chao LH, Tscuchia Y, Djordjevic S (2005) Crystal structure of tobacco etch virus protease shows the protein C terminus bound within the active site. J Mol Biol 350:145-155. (Pubitemid 40804738)
-
(2005)
Journal of Molecular Biology
, vol.350
, Issue.1
, pp. 145-155
-
-
Nunn, C.M.1
Jeeves, M.2
Cliff, M.J.3
Urquhart, G.T.4
George, R.R.5
Chao, L.H.6
Tscuchia, Y.7
Djordjevic, S.8
-
30
-
-
0035788131
-
Spherically averaged phased translation function and its application to the search for molecules and fragments in electron-density maps
-
Vagin AA, Isupov MN (2001) Spherically averaged phased translation function and its application to the search for molecules and fragments in electron-density maps. Acta Crystallogr D Biol Crystallogr 57:1451-1456.
-
(2001)
Acta Crystallogr D Biol Crystallogr
, vol.57
, pp. 1451-1456
-
-
Vagin, A.A.1
Isupov, M.N.2
-
31
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones TA, Zou JY, Cowan SW, Kjeldgaard M (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 47 (Part 2):110-119.
-
(1991)
Acta Crystallogr A
, vol.47
, Issue.PART 2
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
33
-
-
0027169515
-
Mainchain bond lengths and bond angles in protein structures
-
Laskowski RA, Moss DS, Thornton JM (1993) Mainchain bond lengths and bond angles in protein structures. J Mol Biol 231:1049-1067.
-
(1993)
J Mol Biol
, vol.231
, pp. 1049-1067
-
-
Laskowski, R.A.1
Moss, D.S.2
Thornton, J.M.3
-
34
-
-
34547592557
-
MolProbity: All-atom contacts and structure validation for proteins and nucleic acids
-
Davis IW, Leaver-Fay A, Chen VB, Block JN, Kapral GJ, Wang X, Murray LW, Arendall WB,III, Snoeyink J, Richardson JS, et al. (2007) MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res 35:W375-W383.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
Block, J.N.4
Kapral, G.J.5
Wang, X.6
Murray, L.W.7
Arendall III, W.B.8
Snoeyink, J.9
Richardson, J.S.10
-
35
-
-
0033954256
-
The protein data bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) The protein data bank. Nucleic Acids Res 28:235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
37
-
-
0001351236
-
Effect of substrate residues on the P2' preference of retroviral proteinases
-
DOI 10.1046/j.1432-1327.1999.00687.x
-
Boross P, Bagossi P, Copeland TD, Oroszlan S, Louis JM, Tozser J (1999) Effect of substrate residues on the P2' preference of retroviral proteinases. Eur J Biochem 264:921-929. (Pubitemid 29437224)
-
(1999)
European Journal of Biochemistry
, vol.264
, Issue.3
, pp. 921-929
-
-
Boross, P.1
Bagossi, P.2
Copeland, T.D.3
Oroszlan, S.4
Louis, J.M.5
Tozser, J.6
|