-
1
-
-
75949088274
-
DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery
-
Ahmed S, Brickner DG, Light WH, Cajigas I, McDonough M, Froyshteter AB, Volpe T, Brickner JH. 2010. DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery. Nature Cell Biology 12: 111-118. doi: 10.1038/ncb2011
-
(2010)
Nature Cell Biology
, vol.12
, pp. 111-118
-
-
Ahmed, S.1
Brickner, D.G.2
Light, W.H.3
Cajigas, I.4
McDonough, M.5
Froyshteter, A.B.6
Volpe, T.7
Brickner, J.H.8
-
2
-
-
0034618762
-
TFIIH is negatively regulated by cdk8-containing mediator complexes
-
Akoulitchev S, Chuikov S, Reinberg D. 2000. TFIIH is negatively regulated by cdk8-containing mediator complexes. Nature 407: 102-106. doi: 10.1038/35024111
-
(2000)
Nature
, vol.407
, pp. 102-106
-
-
Akoulitchev, S.1
Chuikov, S.2
Reinberg, D.3
-
3
-
-
79960643838
-
Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription
-
Ardehali MB, Mei A, Zobeck KL, Caron M, Lis JT, Kusch T. 2011. Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription. The EMBO Journal 30: 2817-2828. doi: 10.1038/emboj.2011.194
-
(2011)
The EMBO Journal
, vol.30
, pp. 2817-2828
-
-
Ardehali, M.B.1
Mei, A.2
Zobeck, K.L.3
Caron, M.4
Lis, J.T.5
Kusch, T.6
-
4
-
-
84874282698
-
CDK8 kinase phosphorylates transcription factor STAT1 to selectively regulate the interferon response
-
Bancerek J, Poss ZC, Steinparzer I, Sedlyarov V, Pfaffenwimmer T, Mikulic I, Dölken L, Strobl B, Müller M, Taatjes DJ, Kovarik P. 2013. CDK8 kinase phosphorylates transcription factor STAT1 to selectively regulate the interferon response. Immunity 38: 250-262. doi: 10.1016/j.immuni.2012.10.017
-
(2013)
Immunity
, vol.38
, pp. 250-262
-
-
Bancerek, J.1
Poss, Z.C.2
Steinparzer, I.3
Sedlyarov, V.4
Pfaffenwimmer, T.5
Mikulic, I.6
Dölken, L.7
Strobl, B.8
Müller, M.9
Taatjes, D.J.10
Kovarik, P.11
-
5
-
-
55449104987
-
Stress-activated genomic expression changes serve a preparative role for impending stress in yeast
-
Berry DB, Gasch AP. 2008. Stress-activated genomic expression changes serve a preparative role for impending stress in yeast. Molecular Biology of the Cell 19: 4580-4587. doi: 10.1091/mbc.E07-07-0680
-
(2008)
Molecular Biology of the Cell
, vol.19
, pp. 4580-4587
-
-
Berry, D.B.1
Gasch, A.P.2
-
6
-
-
84959346645
-
Inducible chromatin priming is associated with the establishment of immunological memory in T cells
-
Bevington SL, Cauchy P, Piper J, Bertrand E, Lalli N, Jarvis RC, Gilding LN, Ott S, Bonifer C, Cockerill PN. 2016. Inducible chromatin priming is associated with the establishment of immunological memory in T cells. The EMBO Journal 35: 515-535. doi: 10.15252/embj.201592534
-
(2016)
The EMBO Journal
, vol.35
, pp. 515-535
-
-
Bevington, S.L.1
Cauchy, P.2
Piper, J.3
Bertrand, E.4
Lalli, N.5
Jarvis, R.C.6
Gilding, L.N.7
Ott, S.8
Bonifer, C.9
Cockerill, P.N.10
-
7
-
-
84862128143
-
Transcription factor binding to a DNA zip code controls interchromosomal clustering at the nuclear periphery
-
Brickner DG, Ahmed S, Meldi L, Thompson A, Light W, Young M, Hickman TL, Chu F, Fabre E, Brickner JH. 2012. Transcription factor binding to a DNA zip code controls interchromosomal clustering at the nuclear periphery. Developmental Cell 22: 1234-1246. doi: 10.1016/j.devcel.2012.03.012
-
(2012)
Developmental Cell
, vol.22
, pp. 1234-1246
-
-
Brickner, D.G.1
Ahmed, S.2
Meldi, L.3
Thompson, A.4
Light, W.5
Young, M.6
Hickman, T.L.7
Chu, F.8
Fabre, E.9
Brickner, J.H.10
-
8
-
-
34247341747
-
H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state
-
Brickner DG, Cajigas I, Fondufe-Mittendorf Y, Ahmed S, Lee PC, Widom J, Brickner JH. 2007. H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state. PLOS Biology 5: e81. doi: 10.1371/journal.pbio.0050081
-
(2007)
PLOS Biology
, vol.5
, pp. e81
-
-
Brickner, D.G.1
Cajigas, I.2
Fondufe-Mittendorf, Y.3
Ahmed, S.4
Lee, P.C.5
Widom, J.6
Brickner, J.H.7
-
9
-
-
84979706861
-
INO1 transcriptional memory leads to DNA zip code-dependent interchromosomal clustering
-
Brickner DG, Coukos R, Brickner JH. 2015. INO1 transcriptional memory leads to DNA zip code-dependent interchromosomal clustering. Microbial Cell 2: 481-490. doi: 10.15698/mic2015.12.242
-
(2015)
Microbial Cell
, vol.2
, pp. 481-490
-
-
Brickner, D.G.1
Coukos, R.2
Brickner, J.H.3
-
10
-
-
77956039093
-
Quantitative localization of chromosomal loci by immunofluorescence
-
Brickner DG, Light W, Brickner JH. 2010. Quantitative localization of chromosomal loci by immunofluorescence. Methods in Enzymology 470: 569-580. doi: 10.1016/S0076-6879(10)70022-7
-
(2010)
Methods in Enzymology
, vol.470
, pp. 569-580
-
-
Brickner, D.G.1
Light, W.2
Brickner, J.H.3
-
11
-
-
14044266853
-
Gene recruitment of the activated INO1 locus to the nuclear membrane
-
Brickner JH, Walter P. 2004. Gene recruitment of the activated INO1 locus to the nuclear membrane. PLOS Biology 2: e342. doi: 10.1371/journal.pbio.0020342
-
(2004)
PLOS Biology
, vol.2
, pp. e342
-
-
Brickner, J.H.1
Walter, P.2
-
12
-
-
0035893240
-
Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae
-
Briggs SD, Bryk M, Strahl BD, Cheung WL, Davie JK, Dent SY, Winston F, Allis CD. 2001. Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae. Genes & Development 15: 3286-3295. doi: 10.1101/gad.940201
-
(2001)
Genes & Development
, vol.15
, pp. 3286-3295
-
-
Briggs, S.D.1
Bryk, M.2
Strahl, B.D.3
Cheung, W.L.4
Davie, J.K.5
Dent, S.Y.6
Winston, F.7
Allis, C.D.8
-
13
-
-
84940459954
-
PAF1, a Molecular Regulator of Promoter-Proximal Pausing by RNA Polymerase II
-
Chen FX, Woodfin AR, Gardini A, Rickels RA, Marshall SA, Smith ER, Shiekhattar R, Shilatifard A. 2015. PAF1, a Molecular Regulator of Promoter-Proximal Pausing by RNA Polymerase II. Cell 162: 1003-1015. doi: 10.1016/j.cell.2015.07.042
-
(2015)
Cell
, vol.162
, pp. 1003-1015
-
-
Chen, F.X.1
Woodfin, A.R.2
Gardini, A.3
Rickels, R.A.4
Marshall, S.A.5
Smith, E.R.6
Shiekhattar, R.7
Shilatifard, A.8
-
14
-
-
0029055145
-
Identification of an 11-kDa FKBP12-rapamycin-binding domain within the 289-kDa FKBP12-rapamycin-associated protein and characterization of a critical serine residue
-
Chen J, Zheng XF, Brown EJ, Schreiber SL. 1995. Identification of an 11-kDa FKBP12-rapamycin-binding domain within the 289-kDa FKBP12-rapamycin-associated protein and characterization of a critical serine residue. Proceedings of the National Academy of Sciences of the United States of America 92: 4947-4951. doi: 10.1073/pnas.92.11.4947
-
(1995)
Proceedings of the National Academy of Sciences of the United States of America
, vol.92
, pp. 4947-4951
-
-
Chen, J.1
Zheng, X.F.2
Brown, E.J.3
Schreiber, S.L.4
-
15
-
-
75649111192
-
The genetic landscape of a cell
-
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, Alizadeh S, Bahr S, Brost RL, Chen Y, Cokol M, et al. 2010. The genetic landscape of a cell. Science 327: 425-431. doi: 10.1126/science.1180823
-
(2010)
Science
, vol.327
, pp. 425-431
-
-
Costanzo, M.1
Baryshnikova, A.2
Bellay, J.3
Kim, Y.4
Spear, E.D.5
Sevier, C.S.6
Ding, H.7
Koh, J.L.8
Toufighi, K.9
Mostafavi, S.10
Prinz, J.11
St Onge, R.P.12
VanderSluis, B.13
Makhnevych, T.14
Vizeacoumar, F.J.15
Alizadeh, S.16
Bahr, S.17
Brost, R.L.18
Chen, Y.19
Cokol, M.20
more..
-
16
-
-
84901446291
-
Mechanisms of epigenetic memory
-
D’Urso A, Brickner JH. 2014. Mechanisms of epigenetic memory. Trends in Genetics 30: 230-236. doi: 10.1016/j.tig.2014.04.004
-
(2014)
Trends in Genetics
, vol.30
, pp. 230-236
-
-
D’Urso, A.1
Brickner, J.H.2
-
17
-
-
51549087123
-
Probing nucleosome function: A highly versatile library of synthetic histone H3 and H4 mutants
-
Dai J, Hyland EM, Yuan DS, Huang H, Bader JS, Boeke JD. 2008. Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants. Cell 134: 1066-1078. doi: 10.1016/j.cell.2008.07.019
-
(2008)
Cell
, vol.134
, pp. 1066-1078
-
-
Dai, J.1
Hyland, E.M.2
Yuan, D.S.3
Huang, H.4
Bader, J.S.5
Boeke, J.D.6
-
19
-
-
84859207508
-
Multiple exposures to drought ‘train’ transcriptional responses in Arabidopsis
-
Ding Y, Fromm M, Avramova Z. 2012. Multiple exposures to drought ‘train’ transcriptional responses in Arabidopsis. Nature Communications 3: 740. doi: 10.1038/ncomms1732
-
(2012)
Nature Communications
, vol.3
, pp. 740
-
-
Ding, Y.1
Fromm, M.2
Avramova, Z.3
-
20
-
-
84891356161
-
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana
-
Ding Y, Liu N, Virlouvet L, Riethoven JJ, Fromm M, Avramova Z. 2013. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biology 13: 229. doi: 10.1186/1471-2229-13-229
-
(2013)
BMC Plant Biology
, vol.13
, pp. 229
-
-
Ding, Y.1
Liu, N.2
Virlouvet, L.3
Riethoven, J.J.4
Fromm, M.5
Avramova, Z.6
-
21
-
-
33746849256
-
Regulation of MLL1 H3K4 methyltransferase activity by its core components
-
Dou Y, Milne TA, Ruthenburg AJ, Lee S, Lee JW, Verdine GL, Allis CD, Roeder RG. 2006. Regulation of MLL1 H3K4 methyltransferase activity by its core components. Nature Structural & Molecular Biology 13: 713-719. doi: 10.1038/nsmb1128
-
(2006)
Nature Structural & Molecular Biology
, vol.13
, pp. 713-719
-
-
Dou, Y.1
Milne, T.A.2
Ruthenburg, A.J.3
Lee, S.4
Lee, J.W.5
Verdine, G.L.6
Allis, C.D.7
Roeder, R.G.8
-
22
-
-
84900843567
-
Approaches to studying subnuclear organization and gene-nuclear pore interactions
-
Egecioglu DE, D’Urso A, Brickner DG, Light WH, Brickner JH. 2014. Approaches to studying subnuclear organization and gene-nuclear pore interactions. Methods in Cell Biology 122: 463-485. doi: 10.1016/B978-0-12-417160-2.00021-7
-
(2014)
Methods in Cell Biology
, vol.122
, pp. 463-485
-
-
Egecioglu, D.E.1
D’Urso, A.2
Brickner, D.G.3
Light, W.H.4
Brickner, J.H.5
-
23
-
-
0024849126
-
Domains of the SFL1 protein of yeasts are homologous to Myc oncoproteins or yeast heat-shock transcription factor
-
Fujita A, Kikuchi Y, Kuhara S, Misumi Y, Matsumoto S, Kobayashi H. 1989. Domains of the SFL1 protein of yeasts are homologous to Myc oncoproteins or yeast heat-shock transcription factor. Gene 85: 321-328. doi: 10.1016/0378-1119(89)90424-1
-
(1989)
Gene
, vol.85
, pp. 321-328
-
-
Fujita, A.1
Kikuchi, Y.2
Kuhara, S.3
Misumi, Y.4
Matsumoto, S.5
Kobayashi, H.6
-
24
-
-
84878831596
-
HIF1A employs CDK8-mediator to stimulate RNAPII elongation in response to hypoxia
-
Galbraith MD, Allen MA, Bensard CL, Wang X, Schwinn MK, Qin B, Long HW, Daniels DL, Hahn WC, Dowell RD, Espinosa JM. 2013. HIF1A employs CDK8-mediator to stimulate RNAPII elongation in response to hypoxia. Cell 153: 1327-1339. doi: 10.1016/j.cell.2013.04.048
-
(2013)
Cell
, vol.153
, pp. 1327-1339
-
-
Galbraith, M.D.1
Allen, M.A.2
Bensard, C.L.3
Wang, X.4
Schwinn, M.K.5
Qin, B.6
Long, H.W.7
Daniels, D.L.8
Hahn, W.C.9
Dowell, R.D.10
Espinosa, J.M.11
-
26
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, Storz G, Botstein D, Brown PO. 2000. Genomic expression programs in the response of yeast cells to environmental changes. Molecular Biology of the Cell 11: 4241-4257. doi: 10.1091/mbc.11.12.4241
-
(2000)
Molecular Biology of the Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
27
-
-
84894131718
-
Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast
-
Geisberg JV, Moqtaderi Z, Fan X, Ozsolak F, Struhl K. 2014. Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast. Cell 156: 812-824. doi: 10.1016/j.cell.2013.12.026
-
(2014)
Cell
, vol.156
, pp. 812-824
-
-
Geisberg, J.V.1
Moqtaderi, Z.2
Fan, X.3
Ozsolak, F.4
Struhl, K.5
-
28
-
-
0038374526
-
Transcriptional elongation by RNA polymerase II and histone methylation
-
Gerber M, Shilatifard A. 2003. Transcriptional elongation by RNA polymerase II and histone methylation. Journal of Biological Chemistry 278: 26303-26306. doi: 10.1074/jbc.R300014200
-
(2003)
Journal of Biological Chemistry
, vol.278
, pp. 26303-26306
-
-
Gerber, M.1
Shilatifard, A.2
-
29
-
-
77950681154
-
Gamma interferon-dependent transcriptional memory via relocalization of a gene locus to PML nuclear bodies
-
Gialitakis M, Arampatzi P, Makatounakis T, Papamatheakis J. 2010. Gamma interferon-dependent transcriptional memory via relocalization of a gene locus to PML nuclear bodies. Molecular and Cellular Biology 30: 2046-2056. doi: 10.1128/MCB.00906-09
-
(2010)
Molecular and Cellular Biology
, vol.30
, pp. 2046-2056
-
-
Gialitakis, M.1
Arampatzi, P.2
Makatounakis, T.3
Papamatheakis, J.4
-
30
-
-
0022817308
-
RNA polymerase InteractsII interacts with the promoter Regionregion of the Noninducednoninduced hsp70 gene in Drosophila melanogaster cells
-
Gilmour DS, Lis JT. 1986. RNA polymerase InteractsII interacts with the promoter Regionregion of the Noninducednoninduced hsp70 gene in Drosophila melanogaster cells. Molecular and Cellular Biology 6: 3984-3989. doi: 10.1128/mcb.6.11.3984
-
(1986)
Molecular and Cellular Biology
, vol.6
, pp. 3984-3989
-
-
Gilmour, D.S.1
Lis, J.T.2
-
31
-
-
84867226679
-
Cellular memory of acquired stress resistance in Saccharomyces cerevisiae
-
Guan Q, Haroon S, Bravo DG, Will JL, Gasch AP. 2012. Cellular memory of acquired stress resistance in Saccharomyces cerevisiae. Genetics 192: 495-505. doi: 10.1534/genetics.112.143016
-
(2012)
Genetics
, vol.192
, pp. 495-505
-
-
Guan, Q.1
Haroon, S.2
Bravo, D.G.3
Will, J.L.4
Gasch, A.P.5
-
32
-
-
77954738659
-
Roles for H2A.Z and its acetylation in GAL1 transcription and gene induction, but not GAL1-transcriptional memory
-
Halley JE, Kaplan T, Wang AY, Kobor MS, Rine J. 2010. Roles for H2A.Z and its acetylation in GAL1 transcription and gene induction, but not GAL1-transcriptional memory. PLOS Biology 8: e1000401. doi: 10.1371/journal.pbio.1000401
-
(2010)
PLOS Biology
, vol.8
, pp. e1000401
-
-
Halley, J.E.1
Kaplan, T.2
Wang, A.Y.3
Kobor, M.S.4
Rine, J.5
-
33
-
-
0031840672
-
Molecular genetics of the RNA polymerase II general transcriptional machinery
-
Hampsey M. 1998. Molecular genetics of the RNA polymerase II general transcriptional machinery. Microbiology and Molecular Biology Reviews 62: 465-503.
-
(1998)
Microbiology and Molecular Biology Reviews
, vol.62
, pp. 465-503
-
-
Hampsey, M.1
-
34
-
-
52049084405
-
The anchor-away technique: Rapid, conditional establishment of yeast mutant phenotypes
-
Haruki H, Nishikawa J, Laemmli UK. 2008. The anchor-away technique: rapid, conditional establishment of yeast mutant phenotypes. Molecular Cell 31: 925-932. doi: 10.1016/j.molcel.2008.07.020
-
(2008)
Molecular Cell
, vol.31
, pp. 925-932
-
-
Haruki, H.1
Nishikawa, J.2
Laemmli, U.K.3
-
35
-
-
84907260816
-
Histone H3 lysine-to-methionine mutants as a paradigm to study chromatin signaling
-
Herz HM, Morgan M, Gao X, Jackson J, Rickels R, Swanson SK, Florens L, Washburn MP, Eissenberg JC, Shilatifard A. 2014. Histone H3 lysine-to-methionine mutants as a paradigm to study chromatin signaling. Science 345: 1065-1070. doi: 10.1126/science.1255104
-
(2014)
Science
, vol.345
, pp. 1065-1070
-
-
Herz, H.M.1
Morgan, M.2
Gao, X.3
Jackson, J.4
Rickels, R.5
Swanson, S.K.6
Florens, L.7
Washburn, M.P.8
Eissenberg, J.C.9
Shilatifard, A.10
-
36
-
-
84891711796
-
The MLL3/MLL4 Branches of the COMPASS Family Function as Major Histone H3K4 Monomethylases at Enhancers
-
Hu D, Gao X, Morgan MA, Herz H-M, Smith ER, Shilatifard A. 2013a. The MLL3/MLL4 Branches of the COMPASS Family Function as Major Histone H3K4 Monomethylases at Enhancers. Molecular and Cellular Biology 33: 4745-4754. doi: 10.1128/MCB.01181-13
-
(2013)
Molecular and Cellular Biology
, vol.33
, pp. 4745-4754
-
-
Hu, D.1
Gao, X.2
Morgan, M.A.3
Herz, H.-M.4
Smith, E.R.5
Shilatifard, A.6
-
37
-
-
84883743029
-
The Mll2 branch of the COMPASS family regulates bivalent promoters in mouse embryonic stem cells
-
Hu D, Garruss AS, Gao X, Morgan MA, Cook M, Smith ER, Shilatifard A. 2013b. The Mll2 branch of the COMPASS family regulates bivalent promoters in mouse embryonic stem cells. Nature Structural & Molecular Biology 20: 1093-1097. doi: 10.1038/nsmb.2653
-
(2013)
Nature Structural & Molecular Biology
, vol.20
, pp. 1093-1097
-
-
Hu, D.1
Garruss, A.S.2
Gao, X.3
Morgan, M.A.4
Cook, M.5
Smith, E.R.6
Shilatifard, A.7
-
38
-
-
10744224167
-
Menin associates with a trithorax family histone methyltransferase complex and with the hoxc8 locus
-
Hughes CM, Rozenblatt-Rosen O, Milne TA, Copeland TD, Levine SS, Lee JC, Hayes DN, Shanmugam KS, Bhattacharjee A, Biondi CA, Kay GF, Hayward NK, Hess JL, Meyerson M. 2004. Menin associates with a trithorax family histone methyltransferase complex and with the hoxc8 locus. Molecular Cell 13: 587-597. doi: 10.1016/s1097-2765(04)00081-4
-
(2004)
Molecular Cell
, vol.13
, pp. 587-597
-
-
Hughes, C.M.1
Rozenblatt-Rosen, O.2
Milne, T.A.3
Copeland, T.D.4
Levine, S.S.5
Lee, J.C.6
Hayes, D.N.7
Shanmugam, K.S.8
Bhattacharjee, A.9
Biondi, C.A.10
Kay, G.F.11
Hayward, N.K.12
Hess, J.L.13
Meyerson, M.14
-
39
-
-
84902073419
-
Kin28 regulates the transient association of Mediator with core promoters
-
Jeronimo C, Robert F. 2014. Kin28 regulates the transient association of Mediator with core promoters. Nature Structural & Molecular Biology 21: 449-455. doi: 10.1038/nsmb.2810
-
(2014)
Nature Structural & Molecular Biology
, vol.21
, pp. 449-455
-
-
Jeronimo, C.1
Robert, F.2
-
40
-
-
84885419214
-
Regulation of transcription by the MLL2 complex and MLL complex-associated AKAP95
-
Jiang H, Lu X, Shimada M, Dou Y, Tang Z, Roeder RG. 2013. Regulation of transcription by the MLL2 complex and MLL complex-associated AKAP95. Nature Structural & Molecular Biology 20: 1156-1163. doi: 10.1038/nsmb.2656
-
(2013)
Nature Structural & Molecular Biology
, vol.20
, pp. 1156-1163
-
-
Jiang, H.1
Lu, X.2
Shimada, M.3
Dou, Y.4
Tang, Z.5
Roeder, R.G.6
-
41
-
-
79951711112
-
Role for Dpy-30 in ES cell-fate specification by regulation of H3K4 methylation within bivalent domains
-
Jiang H, Shukla A, Wang X, Chen WY, Bernstein BE, Roeder RG, Chen Wei-yi. 2011. Role for Dpy-30 in ES cell-fate specification by regulation of H3K4 methylation within bivalent domains. Cell 144: 327-339. doi: 10.1016/j.cell.2011.01.020
-
(2011)
Cell
, vol.144
, pp. 327-339
-
-
Jiang, H.1
Shukla, A.2
Wang, X.3
Chen, W.Y.4
Bernstein, B.E.5
Roeder, R.G.6
Wei-Yi, C.7
-
42
-
-
2142658771
-
Using chromatin immunoprecipitation to map cotranscriptional mRNA processing in Saccharomyces cerevisiae
-
Keogh MC, Buratowski S. 2004. Using chromatin immunoprecipitation to map cotranscriptional mRNA processing in Saccharomyces cerevisiae. Methods in Molecular Biology 257: 1-16. doi: 10.1385/1-59259-750-5: 001
-
(2004)
Methods in Molecular Biology
, vol.257
, pp. 1-16
-
-
Keogh, M.C.1
Buratowski, S.2
-
43
-
-
64249111489
-
Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5' transcribed regions
-
Kim T, Buratowski S. 2009. Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5' transcribed regions. Cell 137: 259-272. doi: 10.1016/j.cell.2009.02.045
-
(2009)
Cell
, vol.137
, pp. 259-272
-
-
Kim, T.1
Buratowski, S.2
-
44
-
-
84866392310
-
Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics
-
Kim T, Xu Z, Clauder-Münster S, Steinmetz LM, Buratowski S. 2012. Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics. Cell 150: 1158-1169. doi: 10.1016/j.cell.2012.08.016
-
(2012)
Cell
, vol.150
, pp. 1158-1169
-
-
Kim, T.1
Xu, Z.2
Clauder-Münster, S.3
Steinmetz, L.M.4
Buratowski, S.5
-
45
-
-
79952269412
-
Mediator and post-recruitment regulation of RNA polymerase II
-
Knuesel MT, Taatjes DJ. 2011. Mediator and post-recruitment regulation of RNA polymerase II. Transcription 2: 28-31. doi: 10.4161/trns.2.1.13950
-
(2011)
Transcription
, vol.2
, pp. 28-31
-
-
Knuesel, M.T.1
Taatjes, D.J.2
-
46
-
-
84878315605
-
Global regulation of promoter melting in naive lymphocytes
-
Kouzine F, Wojtowicz D, Yamane A, Resch W, Kieffer-Kwon KR, Bandle R, Nelson S, Nakahashi H, Awasthi P, Feigenbaum L, Menoni H, Hoeijmakers J, Vermeulen W, Ge H, Przytycka TM, Levens D, Casellas R. 2013. Global regulation of promoter melting in naive lymphocytes. Cell 153: 988-999. doi: 10.1016/j.cell.2013.04.033
-
(2013)
Cell
, vol.153
, pp. 988-999
-
-
Kouzine, F.1
Wojtowicz, D.2
Yamane, A.3
Resch, W.4
Kieffer-Kwon, K.R.5
Bandle, R.6
Nelson, S.7
Nakahashi, H.8
Awasthi, P.9
Feigenbaum, L.10
Menoni, H.11
Hoeijmakers, J.12
Vermeulen, W.13
Ge, H.14
Przytycka, T.M.15
Levens, D.16
Casellas, R.17
-
47
-
-
0037192780
-
COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expression
-
Krogan NJ, Dover J, Khorrami S, Greenblatt JF, Schneider J, Johnston M, Shilatifard A. 2002. COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expression. Journal of Biological Chemistry 277: 10753-10755. doi: 10.1074/jbc.C200023200
-
(2002)
Journal of Biological Chemistry
, vol.277
, pp. 10753-10755
-
-
Krogan, N.J.1
Dover, J.2
Khorrami, S.3
Greenblatt, J.F.4
Schneider, J.5
Johnston, M.6
Shilatifard, A.7
-
48
-
-
34247279134
-
SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster
-
Kundu S, Horn PJ, Peterson CL. 2007. SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster. Genes & Development 21: 997-1004. doi: 10.1101/gad.1506607
-
(2007)
Genes & Development
, vol.21
, pp. 997-1004
-
-
Kundu, S.1
Horn, P.J.2
Peterson, C.L.3
-
49
-
-
84887161037
-
Control of transcriptional elongation
-
Kwak H, Lis JT. 2013. Control of transcriptional elongation. Annual Review of Genetics 47: 483-508. doi: 10.1146/annurev-genet-110711-155440
-
(2013)
Annual Review of Genetics
, vol.47
, pp. 483-508
-
-
Kwak, H.1
Lis, J.T.2
-
50
-
-
34250352746
-
Identification and characterization of the human Set1B histone H3-Lys4 methyltransferase complex
-
Lee JH, Tate CM, You JS, Skalnik DG. 2007. Identification and characterization of the human Set1B histone H3-Lys4 methyltransferase complex. Journal of Biological Chemistry 282: 13419-13428. doi: 10.1074/jbc.M609809200
-
(2007)
Journal of Biological Chemistry
, vol.282
, pp. 13419-13428
-
-
Lee, J.H.1
Tate, C.M.2
You, J.S.3
Skalnik, D.G.4
-
51
-
-
34249874030
-
Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription
-
Li B, Gogol M, Carey M, Pattenden SG, Seidel C, Workman JL. 2007. Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription. Genes & Development 21: 1422-1430. doi: 10.1101/gad.1539307
-
(2007)
Genes & Development
, vol.21
, pp. 1422-1430
-
-
Li, B.1
Gogol, M.2
Carey, M.3
Pattenden, S.G.4
Seidel, C.5
Workman, J.L.6
-
52
-
-
77957377062
-
Interaction of a DNA zip code with the nuclear pore complex promotes H2A.Z incorporation and INO1 transcriptional memory
-
Light WH, Brickner DG, Brand VR, Brickner JH. 2010. Interaction of a DNA zip code with the nuclear pore complex promotes H2A.Z incorporation and INO1 transcriptional memory. Molecular Cell 40: 112-125. doi: 10.1016/j.molcel.2010.09.007
-
(2010)
Molecular Cell
, vol.40
, pp. 112-125
-
-
Light, W.H.1
Brickner, D.G.2
Brand, V.R.3
Brickner, J.H.4
-
53
-
-
84875478639
-
A conserved role for human Nup98 in altering chromatin structure and promoting epigenetic transcriptional memory
-
Light WH, Freaney J, Sood V, Thompson A, D’Urso A, Horvath CM, Brickner JH. 2013. A conserved role for human Nup98 in altering chromatin structure and promoting epigenetic transcriptional memory. PLOS Biology 11: e1001524. doi: 10.1371/journal.pbio.1001524
-
(2013)
PLOS Biology
, vol.11
, pp. e1001524
-
-
Light, W.H.1
Freaney, J.2
Sood, V.3
Thompson, A.4
D’Urso, A.5
Horvath, C.M.6
Brickner, J.H.7
-
54
-
-
84901313276
-
Different gene-specific mechanisms determine the ‘revised-response’ memory transcription patterns of a subset of A. thaliana dehydration stress responding genes
-
Liu N, Ding Y, Fromm M, Avramova Z. 2014. Different gene-specific mechanisms determine the ‘revised-response’ memory transcription patterns of a subset of A. thaliana dehydration stress responding genes. Nucleic Acids Research 42: 5556-5566. doi: 10.1093/nar/gku220
-
(2014)
Nucleic Acids Research
, vol.42
, pp. 5556-5566
-
-
Liu, N.1
Ding, Y.2
Fromm, M.3
Avramova, Z.4
-
55
-
-
84955414985
-
A hit-and-run heat shock factor governs sustained histone methylation and transcriptional stress memory
-
Lämke J, Brzezinka K, Altmann S, Bäurle I. 2016. A hit-and-run heat shock factor governs sustained histone methylation and transcriptional stress memory. The EMBO Journal 35: 162-175. doi: 10.15252/embj.201592593
-
(2016)
The EMBO Journal
, vol.35
, pp. 162-175
-
-
Lämke, J.1
Brzezinka, K.2
Altmann, S.3
Bäurle, I.4
-
56
-
-
84866887452
-
Two distinct repressive mechanisms for histone 3 lysine 4 methylation through promoting 3'-end antisense transcription
-
Margaritis T, Oreal V, Brabers N, Maestroni L, Vitaliano-Prunier A, Benschop JJ, van Hooff S, van Leenen D, Dargemont C, Géli V, Holstege FC. 2012. Two distinct repressive mechanisms for histone 3 lysine 4 methylation through promoting 3'-end antisense transcription. PLOS Genetics 8: e1002952. doi: 10.1371/journal.pgen.1002952
-
(2012)
PLOS Genetics
, vol.8
, pp. e1002952
-
-
Margaritis, T.1
Oreal, V.2
Brabers, N.3
Maestroni, L.4
Vitaliano-Prunier, A.5
Benschop, J.J.6
Van Hooff, S.7
Van Leenen, D.8
Dargemont, C.9
Géli, V.10
Holstege, F.C.11
-
57
-
-
0029959881
-
Control of RNA polymerase II elongation potential by a novel carboxyl-terminal domain kinase
-
Marshall NF, Peng J, Xie Z, Price DH. 1996. Control of RNA polymerase II elongation potential by a novel carboxyl-terminal domain kinase. Journal of Biological Chemistry 271: 27176-27183. doi: 10.1074/jbc.271.43.27176
-
(1996)
Journal of Biological Chemistry
, vol.271
, pp. 27176-27183
-
-
Marshall, N.F.1
Peng, J.2
Xie, Z.3
Price, D.H.4
-
58
-
-
84893831645
-
Pol II docking and pausing at growth and stress genes in C. elegans
-
Maxwell CS, Kruesi WS, Core LJ, Kurhanewicz N, Waters CT, Lewarch CL, Antoshechkin I, Lis JT, Meyer BJ, Baugh LR. 2014. Pol II docking and pausing at growth and stress genes in C. elegans. Cell Reports 6: 455-466. doi: 10.1016/j.celrep.2014.01.008
-
(2014)
Cell Reports
, vol.6
, pp. 455-466
-
-
Maxwell, C.S.1
Kruesi, W.S.2
Core, L.J.3
Kurhanewicz, N.4
Waters, C.T.5
Lewarch, C.L.6
Antoshechkin, I.7
Lis, J.T.8
Meyer, B.J.9
Baugh, L.R.10
-
59
-
-
0035818465
-
COMPASS: A complex of proteins associated with a trithorax-related SET domain protein
-
Miller T, Krogan NJ, Dover J, Erdjument-Bromage H, Tempst P, Johnston M, Greenblatt JF, Shilatifard A. 2001. COMPASS: a complex of proteins associated with a trithorax-related SET domain protein. Proceedings of the National Academy of Sciences of the United States of America 98: 12902-12907. doi: 10.1073/pnas.231473398
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, pp. 12902-12907
-
-
Miller, T.1
Krogan, N.J.2
Dover, J.3
Erdjument-Bromage, H.4
Tempst, P.5
Johnston, M.6
Greenblatt, J.F.7
Shilatifard, A.8
-
60
-
-
81855195123
-
The COMPASS family of H3K4 methylases in Drosophila
-
Mohan M, Herz HM, Smith ER, Zhang Y, Jackson J, Washburn MP, Florens L, Eissenberg JC, Shilatifard A. 2011. The COMPASS family of H3K4 methylases in Drosophila. Molecular and Cellular Biology 31: 4310-4318. doi: 10.1128/MCB.06092-11
-
(2011)
Molecular and Cellular Biology
, vol.31
, pp. 4310-4318
-
-
Mohan, M.1
Herz, H.M.2
Smith, E.R.3
Zhang, Y.4
Jackson, J.5
Washburn, M.P.6
Florens, L.7
Eissenberg, J.C.8
Shilatifard, A.9
-
61
-
-
20444375490
-
Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription
-
Morillon A, Karabetsou N, Nair A, Mellor J. 2005. Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription. Molecular Cell 18: 723-734. doi: 10.1016/j.molcel.2005.05.009
-
(2005)
Molecular Cell
, vol.18
, pp. 723-734
-
-
Morillon, A.1
Karabetsou, N.2
Nair, A.3
Mellor, J.4
-
62
-
-
0037426868
-
Srb10/Cdk8 regulates yeast filamentous growth by phosphorylating the transcription factor Ste12
-
Nelson C, Goto S, Lund K, Hung W, Sadowski I. 2003. Srb10/Cdk8 regulates yeast filamentous growth by phosphorylating the transcription factor Ste12. Nature 421: 187-190. doi: 10.1038/nature01243
-
(2003)
Nature
, vol.421
, pp. 187-190
-
-
Nelson, C.1
Goto, S.2
Lund, K.3
Hung, W.4
Sadowski, I.5
-
63
-
-
84891861554
-
The two faces of Cdk8, a positive/negative regulator of transcription
-
Nemet J, Jelicic B, Rubelj I, Sopta M. 2014. The two faces of Cdk8, a positive/negative regulator of transcription. Biochimie 97: 22-27. doi: 10.1016/j.biochi.2013.10.004
-
(2014)
Biochimie
, vol.97
, pp. 22-27
-
-
Nemet, J.1
Jelicic, B.2
Rubelj, I.3
Sopta, M.4
-
64
-
-
0344022572
-
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
-
Ng HH, Robert F, Young RA, Struhl K. 2003. Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Molecular Cell 11: 709-719. doi: 10.1016/s1097-2765(03)00092-3
-
(2003)
Molecular Cell
, vol.11
, pp. 709-719
-
-
Ng, H.H.1
Robert, F.2
Young, R.A.3
Struhl, K.4
-
65
-
-
38549115170
-
P-TEFb is critical for the maturation of RNA polymerase II into productive elongation in vivo
-
Ni Z, Saunders A, Fuda NJ, Yao J, Suarez JR, Webb WW, Lis JT. 2008. P-TEFb is critical for the maturation of RNA polymerase II into productive elongation in vivo. Molecular and Cellular Biology 28: 1161-1170. doi: 10.1128/MCB.01859-07
-
(2008)
Molecular and Cellular Biology
, vol.28
, pp. 1161-1170
-
-
Ni, Z.1
Saunders, A.2
Fuda, N.J.3
Yao, J.4
Suarez, J.R.5
Webb, W.W.6
Lis, J.T.7
-
66
-
-
20144389926
-
PARP-1 determines specificity in a retinoid signaling pathway via direct modulation of mediator
-
Pavri R, Lewis B, Kim TK, Dilworth FJ, Erdjument-Bromage H, Tempst P, de Murcia G, Evans R, Chambon P, Reinberg D. 2005. PARP-1 determines specificity in a retinoid signaling pathway via direct modulation of mediator. Molecular Cell 18: 83-96. doi: 10.1016/j.molcel.2005.02.034
-
(2005)
Molecular Cell
, vol.18
, pp. 83-96
-
-
Pavri, R.1
Lewis, B.2
Kim, T.K.3
Dilworth, F.J.4
Erdjument-Bromage, H.5
Tempst, P.6
De Murcia, G.7
Evans, R.8
Chambon, P.9
Reinberg, D.10
-
67
-
-
0035834382
-
Trithorax and dCBP acting in a complex to maintain expression of a homeotic gene
-
Petruk S, Sedkov Y, Smith S, Tillib S, Kraevski V, Nakamura T, Canaani E, Croce CM, Mazo A. 2001. Trithorax and dCBP acting in a complex to maintain expression of a homeotic gene. Science 294: 1331-1334. doi: 10.1126/science.1065683
-
(2001)
Science
, vol.294
, pp. 1331-1334
-
-
Petruk, S.1
Sedkov, Y.2
Smith, S.3
Tillib, S.4
Kraevski, V.5
Nakamura, T.6
Canaani, E.7
Croce, C.M.8
Mazo, A.9
-
68
-
-
0035890135
-
The S. cerevisiae SET3 complex includes two histone deacetylases, Hos2 and Hst1, and is a meiotic-specific repressor of the sporulation gene program
-
Pijnappel WW, Schaft D, Roguev A, Shevchenko A, Tekotte H, Wilm M, Rigaut G, Séraphin B, Aasland R, Stewart AF. 2001. The S. cerevisiae SET3 complex includes two histone deacetylases, Hos2 and Hst1, and is a meiotic-specific repressor of the sporulation gene program. Genes & Development 15: 2991-3004. doi: 10.1101/gad.
-
(2001)
Genes & Development
, vol.15
, pp. 2991-3004
-
-
Pijnappel, W.W.1
Schaft, D.2
Roguev, A.3
Shevchenko, A.4
Tekotte, H.5
Wilm, M.6
Rigaut, G.7
Séraphin, B.8
Aasland, R.9
Stewart, A.F.10
-
69
-
-
23944462969
-
Genome-wide map of nucleosome acetylation and methylation in yeast
-
Pokholok DK, Harbison CT, Levine S, Cole M, Hannett NM, Lee TI, Bell GW, Walker K, Rolfe PA, Herbolsheimer E, Zeitlinger J, Lewitter F, Gifford DK, Young RA. 2005. Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 122: 517-527. doi: 10.1016/j.cell.2005.06.026
-
(2005)
Cell
, vol.122
, pp. 517-527
-
-
Pokholok, D.K.1
Harbison, C.T.2
Levine, S.3
Cole, M.4
Hannett, N.M.5
Lee, T.I.6
Bell, G.W.7
Walker, K.8
Rolfe, P.A.9
Herbolsheimer, E.10
Zeitlinger, J.11
Lewitter, F.12
Gifford, D.K.13
Young, R.A.14
-
70
-
-
17044399754
-
Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit
-
Radonjic M, Andrau JC, Lijnzaad P, Kemmeren P, Kockelkorn TT, van Leenen D, van Berkum NL, Holstege FC. 2005. Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit. Molecular Cell 18: 171-183. doi: 10.1016/j.molcel.2005.03.010
-
(2005)
Molecular Cell
, vol.18
, pp. 171-183
-
-
Radonjic, M.1
Andrau, J.C.2
Lijnzaad, P.3
Kemmeren, P.4
Kockelkorn, T.T.5
Van Leenen, D.6
Van Berkum, N.L.7
Holstege, F.C.8
-
71
-
-
84974809800
-
Strategies to regulate transcription factor-mediated gene positioning and interchromosomal clustering at the nuclear periphery
-
Randise-Hinchliff C, Coukos R, Sood V, Sumner MC, Zdraljevic S, Meldi Sholl L, Garvey Brickner D, Ahmed S, Watchmaker L, Brickner JH. 2016. Strategies to regulate transcription factor-mediated gene positioning and interchromosomal clustering at the nuclear periphery. Journal of Cell Biology 212: 633-646. doi: 10.1083/jcb.201508068
-
(2016)
Journal of Cell Biology
, vol.212
, pp. 633-646
-
-
Randise-Hinchliff, C.1
Coukos, R.2
Sood, V.3
Sumner, M.C.4
Zdraljevic, S.5
Meldi Sholl, L.6
Garvey Brickner, D.7
Ahmed, S.8
Watchmaker, L.9
Brickner, J.H.10
-
73
-
-
0030461543
-
In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition
-
Robinett CC, Straight A, Li G, Willhelm C, Sudlow G, Murray A, Belmont AS, Li G WC. 1996. In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition. The Journal of Cell Biology 135: 1685-1700. doi: 10.1083/jcb.135.6.1685
-
(1996)
The Journal of Cell Biology
, vol.135
, pp. 1685-1700
-
-
Robinett, C.C.1
Straight, A.2
Li, G.3
Willhelm, C.4
Sudlow, G.5
Murray, A.6
Belmont, A.S.7
Li, G.W.C.8
-
74
-
-
0037126594
-
The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4
-
Roguev A, Schaft D, Shevchenko A, Pijnappel WW, Wilm M, Aasland R, Stewart AF. 2001. The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4. The EMBO Journal 20: 7137-7148. doi: 10.1093/emboj/20.24.7137
-
(2001)
The EMBO Journal
, vol.20
, pp. 7137-7148
-
-
Roguev, A.1
Schaft, D.2
Shevchenko, A.3
Pijnappel, W.W.4
Wilm, M.5
Aasland, R.6
Stewart, A.F.7
-
75
-
-
0024282827
-
The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged
-
Rougvie AE, Lis JT. 1988. The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged. Cell 54: 795-804. doi: 10.1016/s0092-8674(88)91087-2
-
(1988)
Cell
, vol.54
, pp. 795-804
-
-
Rougvie, A.E.1
Lis, J.T.2
-
76
-
-
84878894271
-
Hyperosmotic priming of Arabidopsis seedlings establishes a long-term somatic memory accompanied by specific changes of the epigenome
-
Sani E, Herzyk P, Perrella G, Colot V, Amtmann A. 2013. Hyperosmotic priming of Arabidopsis seedlings establishes a long-term somatic memory accompanied by specific changes of the epigenome. Genome Biology 14: R59. doi: 10.1186/gb-2013-14-6-r59
-
(2013)
Genome Biology
, vol.14
, pp. R59
-
-
Sani, E.1
Herzyk, P.2
Perrella, G.3
Colot, V.4
Amtmann, A.5
-
77
-
-
0037179716
-
Active genes are tri-methylated at K4 of histone H3
-
Santos-Rosa H, Schneider R, Bannister AJ, Sherriff J, Bernstein BE, Emre NC, Schreiber SL, Mellor J, Kouzarides T. 2002. Active genes are tri-methylated at K4 of histone H3. Nature 419: 407-411. doi: 10.1038/nature01080
-
(2002)
Nature
, vol.419
, pp. 407-411
-
-
Santos-Rosa, H.1
Schneider, R.2
Bannister, A.J.3
Sherriff, J.4
Bernstein, B.E.5
Emre, N.C.6
Schreiber, S.L.7
Mellor, J.8
Kouzarides, T.9
-
78
-
-
0242331196
-
A conserved chromatin architecture marks and maintains the restricted germ cell lineage in worms and flies
-
Schaner CE, Deshpande G, Schedl PD, Kelly WG. 2003. A conserved chromatin architecture marks and maintains the restricted germ cell lineage in worms and flies. Developmental Cell 5: 747-757. doi: 10.1016/s1534-5807(03)00327-7
-
(2003)
Developmental Cell
, vol.5
, pp. 747-757
-
-
Schaner, C.E.1
Deshpande, G.2
Schedl, P.D.3
Kelly, W.G.4
-
79
-
-
24944520025
-
Molecular regulation of histone H3 trimethylation by COMPASS and the regulation of gene expression
-
Schneider J, Wood A, Lee JS, Schuster R, Dueker J, Maguire C, Swanson SK, Florens L, Washburn MP, Shilatifard A. 2005. Molecular regulation of histone H3 trimethylation by COMPASS and the regulation of gene expression. Molecular Cell 19: 849-856. doi: 10.1016/j.molcel.2005.07.024
-
(2005)
Molecular Cell
, vol.19
, pp. 849-856
-
-
Schneider, J.1
Wood, A.2
Lee, J.S.3
Schuster, R.4
Dueker, J.5
Maguire, C.6
Swanson, S.K.7
Florens, L.8
Washburn, M.P.9
Shilatifard, A.10
-
80
-
-
84940504501
-
The Nuclear Pore-Associated TREX-2 Complex Employs Mediator to Regulate Gene Expression
-
Schneider M, Hellerschmied D, Schubert T, Amlacher S, Vinayachandran V, Reja R, Pugh BF, Clausen T, Köhler A. 2015. The Nuclear Pore-Associated TREX-2 Complex Employs Mediator to Regulate Gene Expression. Cell 162: 1016-1028. doi: 10.1016/j.cell.2015.07.059
-
(2015)
Cell
, vol.162
, pp. 1016-1028
-
-
Schneider, M.1
Hellerschmied, D.2
Schubert, T.3
Amlacher, S.4
Vinayachandran, V.5
Reja, R.6
Pugh, B.F.7
Clausen, T.8
Köhler, A.9
-
81
-
-
33746324216
-
Chromatin modifications by methylation and ubiquitination: Implications in the regulation of gene expression
-
Shilatifard A. 2006. Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression. Annual Review of Biochemistry 75: 243-269. doi: 10.1146/annurev.biochem.75.103004.142422
-
(2006)
Annual Review of Biochemistry
, vol.75
, pp. 243-269
-
-
Shilatifard, A.1
-
82
-
-
44649139771
-
Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation
-
Shilatifard A. 2008. Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation. Current Opinion in Cell Biology 20: 341-348. doi: 10.1016/j.ceb.2008.03.019
-
(2008)
Current Opinion in Cell Biology
, vol.20
, pp. 341-348
-
-
Shilatifard, A.1
-
83
-
-
84861870951
-
The COMPASS family of histone H3K4 methylases: Mechanisms of regulation in development and disease pathogenesis
-
Shilatifard A. 2012. The COMPASS family of histone H3K4 methylases: mechanisms of regulation in development and disease pathogenesis. Annual Review of Biochemistry 81: 65-95. doi: 10.1146/annurev-biochem-051710-134100
-
(2012)
Annual Review of Biochemistry
, vol.81
, pp. 65-95
-
-
Shilatifard, A.1
-
84
-
-
84877935652
-
Transcriptional elongation checkpoint control in development and disease
-
Smith E, Shilatifard A. 2013. Transcriptional elongation checkpoint control in development and disease. Genes & Development 27: 1079-1088. doi: 10.1101/gad.215137.113
-
(2013)
Genes & Development
, vol.27
, pp. 1079-1088
-
-
Smith, E.1
Shilatifard, A.2
-
85
-
-
84897073695
-
Feedback control of Set1 protein levels is important for proper H3K4 methylation patterns
-
Soares LM, Radman-Livaja M, Lin SG, Rando OJ, Buratowski S. 2014. Feedback control of Set1 protein levels is important for proper H3K4 methylation patterns. Cell Reports 6: 961-972. doi: 10.1016/j.celrep.2014.02.017
-
(2014)
Cell Reports
, vol.6
, pp. 961-972
-
-
Soares, L.M.1
Radman-Livaja, M.2
Lin, S.G.3
Rando, O.J.4
Buratowski, S.5
-
86
-
-
0032190165
-
Srb/mediator proteins interact functionally and physically with transcriptional repressor Sfl1
-
Song W, Carlson M. 1998. Srb/mediator proteins interact functionally and physically with transcriptional repressor Sfl1. The EMBO Journal 17: 5757-5765. doi: 10.1093/emboj/17.19.5757
-
(1998)
The EMBO Journal
, vol.17
, pp. 5757-5765
-
-
Song, W.1
Carlson, M.2
-
87
-
-
0025057615
-
The block to transcription elongation is promoter dependent in normal and Burkitt’s lymphoma c-myc alleles
-
Spencer CA, LeStrange RC, Novak U, Hayward WS, Groudine M. 1990. The block to transcription elongation is promoter dependent in normal and Burkitt’s lymphoma c-myc alleles. Genes & Development 4: 75-88. doi: 10.1101/gad.4.1.75
-
(1990)
Genes & Development
, vol.4
, pp. 75-88
-
-
Spencer, C.A.1
LeStrange, R.C.2
Novak, U.3
Hayward, W.S.4
Groudine, M.5
-
88
-
-
33748364351
-
Molecular regulation of H3K4 trimethylation by ASH2L, a shared subunit of MLL complexes
-
Steward MM, Lee JS, O’Donovan A, Wyatt M, Bernstein BE, Shilatifard A. 2006. Molecular regulation of H3K4 trimethylation by ASH2L, a shared subunit of MLL complexes. Nature Structural & Molecular Biology 13: 852-854. doi: 10.1038/nsmb1131
-
(2006)
Nature Structural & Molecular Biology
, vol.13
, pp. 852-854
-
-
Steward, M.M.1
Lee, J.S.2
O’Donovan, A.3
Wyatt, M.4
Bernstein, B.E.5
Shilatifard, A.6
-
89
-
-
0030474371
-
GFP tagging of budding yeast chromosomes reveals that protein-protein interactions can mediate sister chromatid cohesion
-
Straight AF, Belmont AS, Robinett CC, Murray AW. 1996. GFP tagging of budding yeast chromosomes reveals that protein-protein interactions can mediate sister chromatid cohesion. Current Biology: CB 6: 1599-1608. doi: 10.1016/s0960-9822(02)70783-5
-
(1996)
Current Biology: CB
, vol.6
, pp. 1599-1608
-
-
Straight, A.F.1
Belmont, A.S.2
Robinett, C.C.3
Murray, A.W.4
-
90
-
-
67650091137
-
Regulation of H3K4 trimethylation via Cps40 (Spp1) of COMPASS is monoubiquitination independent: Implication for a Phe/Tyr switch by the catalytic domain of Set1
-
Takahashi YH, Lee JS, Swanson SK, Saraf A, Florens L, Washburn MP, Trievel RC, Shilatifard A. 2009. Regulation of H3K4 trimethylation via Cps40 (Spp1) of COMPASS is monoubiquitination independent: implication for a Phe/Tyr switch by the catalytic domain of Set1. Molecular and Cellular Biology 29: 3478-3486. doi: 10.1128/MCB.00013-09
-
(2009)
Molecular and Cellular Biology
, vol.29
, pp. 3478-3486
-
-
Takahashi, Y.H.1
Lee, J.S.2
Swanson, S.K.3
Saraf, A.4
Florens, L.5
Washburn, M.P.6
Trievel, R.C.7
Shilatifard, A.8
-
91
-
-
72749098124
-
Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex
-
Tan-Wong SM, Wijayatilake HD, Proudfoot NJ. 2009. Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex. Genes & Development 23: 2610-2624. doi: 10.1101/gad.1823209
-
(2009)
Genes & Development
, vol.23
, pp. 2610-2624
-
-
Tan-Wong, S.M.1
Wijayatilake, H.D.2
Proudfoot, N.J.3
-
92
-
-
84892760832
-
Context dependency of Set1/COMPASS-mediated histone H3 Lys4 trimethylation
-
Thornton JL, Westfield GH, Takahashi YH, Cook M, Gao X, Woodfin AR, Lee JS, Morgan MA, Jackson J, Smith ER, Couture JF, Skiniotis G, Shilatifard A. 2014. Context dependency of Set1/COMPASS-mediated histone H3 Lys4 trimethylation. Genes & Development 28: 115-120. doi: 10.1101/gad.232215.113
-
(2014)
Genes & Development
, vol.28
, pp. 115-120
-
-
Thornton, J.L.1
Westfield, G.H.2
Takahashi, Y.H.3
Cook, M.4
Gao, X.5
Woodfin, A.R.6
Lee, J.S.7
Morgan, M.A.8
Jackson, J.9
Smith, E.R.10
Couture, J.F.11
Skiniotis, G.12
Shilatifard, A.13
-
93
-
-
84902186552
-
Subunit architecture and functional modular rearrangements of the transcriptional mediator complex
-
Tsai KL, Tomomori-Sato C, Sato S, Conaway RC, Conaway JW, Asturias FJ. 2014. Subunit architecture and functional modular rearrangements of the transcriptional mediator complex. Cell 157: 1430-1444. doi: 10.1016/j.cell.2014.05.015
-
(2014)
Cell
, vol.157
, pp. 1430-1444
-
-
Tsai, K.L.1
Tomomori-Sato, C.2
Sato, S.3
Conaway, R.C.4
Conaway, J.W.5
Asturias, F.J.6
-
94
-
-
23744490065
-
Mediator expression profiling epistasis reveals a signal transduction pathway with antagonistic submodules and highly specific downstream targets
-
van de Peppel J, Kettelarij N, van Bakel H, Kockelkorn TT, van Leenen D, Holstege FC. 2005. Mediator expression profiling epistasis reveals a signal transduction pathway with antagonistic submodules and highly specific downstream targets. Molecular Cell 19: 511-522. doi: 10.1016/j.molcel.2005.06.033
-
(2005)
Molecular Cell
, vol.19
, pp. 511-522
-
-
Van De Peppel, J.1
Kettelarij, N.2
Van Bakel, H.3
Kockelkorn, T.T.4
Van Leenen, D.5
Holstege, F.C.6
-
95
-
-
14444275279
-
DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs
-
Wada T, Takagi T, Yamaguchi Y, Ferdous A, Imai T, Hirose S, Sugimoto S, Yano K, Hartzog GA, Winston F, Buratowski S, Handa H. 1998. DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs. Genes & Development 12: 343-356. doi: 10.1101/gad.12.3.343
-
(1998)
Genes & Development
, vol.12
, pp. 343-356
-
-
Wada, T.1
Takagi, T.2
Yamaguchi, Y.3
Ferdous, A.4
Imai, T.5
Hirose, S.6
Sugimoto, S.7
Yano, K.8
Hartzog, G.A.9
Winston, F.10
Buratowski, S.11
Handa, H.12
-
96
-
-
0037111879
-
Requirement of Hos2 histone deacetylase for gene activity in yeast
-
Wang A, Kurdistani SK, Grunstein M. 2002. Requirement of Hos2 histone deacetylase for gene activity in yeast. Science 298: 1412-1414. doi: 10.1126/science.1077790
-
(2002)
Science
, vol.298
, pp. 1412-1414
-
-
Wang, A.1
Kurdistani, S.K.2
Grunstein, M.3
-
97
-
-
71949107301
-
Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II
-
Wang P, Lin C, Smith ER, Guo H, Sanderson BW, Wu M, Gogol M, Alexander T, Seidel C, Wiedemann LM, Ge K, Krumlauf R, Shilatifard A. 2009. Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II. Molecular and Cellular Biology 29: 6074-6085. doi: 10.1128/MCB.00924-09
-
(2009)
Molecular and Cellular Biology
, vol.29
, pp. 6074-6085
-
-
Wang, P.1
Lin, C.2
Smith, E.R.3
Guo, H.4
Sanderson, B.W.5
Wu, M.6
Gogol, M.7
Alexander, T.8
Seidel, C.9
Wiedemann, L.M.10
Ge, K.11
Krumlauf, R.12
Shilatifard, A.13
-
98
-
-
0033229970
-
The economics of ribosome biosynthesis in yeast
-
Warner JR. 1999. The economics of ribosome biosynthesis in yeast. Trends in Biochemical Sciences 24: 437-440. doi: 10.1016/S0968-0004(99)01460-7
-
(1999)
Trends in Biochemical Sciences
, vol.24
, pp. 437-440
-
-
Warner, J.R.1
-
99
-
-
84901235459
-
TFIIH phosphorylation of the Pol II CTD stimulates mediator dissociation from the preinitiation complex and promoter escape
-
Wong KH, Jin Y, Struhl K. 2014. TFIIH phosphorylation of the Pol II CTD stimulates mediator dissociation from the preinitiation complex and promoter escape. Molecular Cell 54: 601-612. doi: 10.1016/j.molcel.2014.03.024
-
(2014)
Molecular Cell
, vol.54
, pp. 601-612
-
-
Wong, K.H.1
Jin, Y.2
Struhl, K.3
-
100
-
-
0037248944
-
Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter
-
Wood A, Krogan NJ, Dover J, Schneider J, Heidt J, Boateng MA, Dean K, Golshani A, Zhang Y, Greenblatt JF, Johnston M, Shilatifard A. 2003. Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter. Molecular Cell 11: 267-274. doi: 10.1016/S1097-2765(02)00802-X
-
(2003)
Molecular Cell
, vol.11
, pp. 267-274
-
-
Wood, A.1
Krogan, N.J.2
Dover, J.3
Schneider, J.4
Heidt, J.5
Boateng, M.A.6
Dean, K.7
Golshani, A.8
Zhang, Y.9
Greenblatt, J.F.10
Johnston, M.11
Shilatifard, A.12
-
101
-
-
33846141146
-
Ctk complex-mediated regulation of histone methylation by COMPASS
-
Wood A, Shukla A, Schneider J, Lee JS, Stanton JD, Dzuiba T, Swanson SK, Florens L, Washburn MP, Wyrick J, Bhaumik SR, Shilatifard A. 2007. Ctk complex-mediated regulation of histone methylation by COMPASS. Molecular and Cellular Biology 27: 709-720. doi: 10.1128/MCB.01627-06
-
(2007)
Molecular and Cellular Biology
, vol.27
, pp. 709-720
-
-
Wood, A.1
Shukla, A.2
Schneider, J.3
Lee, J.S.4
Stanton, J.D.5
Dzuiba, T.6
Swanson, S.K.7
Florens, L.8
Washburn, M.P.9
Wyrick, J.10
Bhaumik, S.R.11
Shilatifard, A.12
-
102
-
-
57349124451
-
Molecular regulation of H3K4 trimethylation by Wdr82, a component of human Set1/COMPASS
-
Wu M, Wang PF, Lee JS, Martin-Brown S, Florens L, Washburn M, Shilatifard A. 2008. Molecular regulation of H3K4 trimethylation by Wdr82, a component of human Set1/COMPASS. Molecular and Cellular Biology 28: 7337-7344. doi: 10.1128/MCB.00976-08
-
(2008)
Molecular and Cellular Biology
, vol.28
, pp. 7337-7344
-
-
Wu, M.1
Wang, P.F.2
Lee, J.S.3
Martin-Brown, S.4
Florens, L.5
Washburn, M.6
Shilatifard, A.7
-
103
-
-
0033515521
-
NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation
-
Yamaguchi Y, Takagi T, Wada T, Yano K, Furuya A, Sugimoto S, Hasegawa J, Handa H. 1999. NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation. Cell 97: 41-51. doi: 10.1016/S0092-8674(00)80713-8
-
(1999)
Cell
, vol.97
, pp. 41-51
-
-
Yamaguchi, Y.1
Takagi, T.2
Wada, T.3
Yano, K.4
Furuya, A.5
Sugimoto, S.6
Hasegawa, J.7
Handa, H.8
-
104
-
-
84949665455
-
RNA polymerase II-associated factor 1 regulates the release and phosphorylation of paused RNA polymerase II
-
Yu M, Yang W, Ni T, Tang Z, Nakadai T, Zhu J, Roeder RG. 2015. RNA polymerase II-associated factor 1 regulates the release and phosphorylation of paused RNA polymerase II. Science 350: 1383-1386. doi: 10.1126/science.aad2338
-
(2015)
Science
, vol.350
, pp. 1383-1386
-
-
Yu, M.1
Yang, W.2
Ni, T.3
Tang, Z.4
Nakadai, T.5
Zhu, J.6
Roeder, R.G.7
-
105
-
-
36549089092
-
A yeast catabolic enzyme controls transcriptional memory
-
Zacharioudakis I, Gligoris T, Tzamarias D. 2007. A yeast catabolic enzyme controls transcriptional memory. Current Biology 17: 2041-2046. doi: 10.1016/j.cub.2007.10.044
-
(2007)
Current Biology
, vol.17
, pp. 2041-2046
-
-
Zacharioudakis, I.1
Gligoris, T.2
Tzamarias, D.3
-
106
-
-
80053411336
-
Recent transcription-induced histone H3 lysine 4 (H3K4) methylation inhibits gene reactivation
-
Zhou BO, Zhou JQ. 2011. Recent transcription-induced histone H3 lysine 4 (H3K4) methylation inhibits gene reactivation. The Journal of Biological Chemistry 286: 34770-34776. doi: 10.1074/jbc.M111.273128
-
(2011)
The Journal of Biological Chemistry
, vol.286
, pp. 34770-34776
-
-
Zhou, B.O.1
Zhou, J.Q.2
-
107
-
-
63849315606
-
High-resolution DNA-binding specificity analysis of yeast transcription factors
-
Zhu C, Byers KJ, McCord RP, Shi Z, Berger MF, Newburger DE, Saulrieta K, Smith Z, Shah MV, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A, Murthy T, Labaer J, Bulyk ML. 2009. High-resolution DNA-binding specificity analysis of yeast transcription factors. Genome Research 19: 556-566. doi: 10.1101/gr.090233.108
-
(2009)
Genome Research
, vol.19
, pp. 556-566
-
-
Zhu, C.1
Byers, K.J.2
McCord, R.P.3
Shi, Z.4
Berger, M.F.5
Newburger, D.E.6
Saulrieta, K.7
Smith, Z.8
Shah, M.V.9
Radhakrishnan, M.10
Philippakis, A.A.11
Hu, Y.12
De Masi, F.13
Pacek, M.14
Rolfs, A.15
Murthy, T.16
Labaer, J.17
Bulyk, M.L.18
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