PARP-1 determines specificity in a retinoid signaling pathway via direct modulation of mediator

Molecular Cell

Volumn 18, Issue 1, 2005, Pages 83-96

  Pavri, Rushad ^a   Lewis, Brian ^a   Kim, Tae Kyung ^a   Dilworth, F Jeffrey ^b   Erdjument Bromage, Hediye ^c   Tempst, Paul ^c   De Murcia, Gilbert ^d   Evans, Ronald ^a   Chambon, Pierre ^b   Reinberg, Danny ^a  

^a HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^b INSERM   (France)

^c MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

^d UNIVERSITÉ DE STRASBOURG   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLIN DEPENDENT KINASE 8; ISOPROTEIN; NICOTINAMIDE ADENINE DINUCLEOTIDE ADENOSINE DIPHOSPHATE RIBOSYLTRANSFERASE; POLYADENOSINE DIPHOSPHATE RIBOSE POLYMERASE 1; RETINOIC ACID RECEPTOR; RETINOIC ACID RECEPTOR BETA; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; CHROMATIN; CONTROLLED STUDY; ENZYME ACTIVE SITE; ENZYME ACTIVITY; GENE EXPRESSION; GENETIC TRANSCRIPTION; IMMUNOPRECIPITATION; MEDIATOR; MOUSE; NONHUMAN; PROMOTER REGION; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; SIGNAL TRANSDUCTION;

EID: 20144389926     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2005.02.034     Document Type: Article

References (70)

1. M.L. Acevedo, K.C. Lee, J.D. Stender, B.S. Katzenellenbogen, and W.L. Kraus Selective recognition of distinct classes of coactivators by a ligand-inducible activation domain Mol. Cell 13 2004 725 738
2. S. Akoulitchev, S. Chuikov, and D. Reinberg TFIIH is negatively regulated by cdk8-containing mediator complexes Nature 407 2000 102 106
3. J.C. Ame, C. Spenlehauer, and G. de Murcia The PARP superfamily Bioessays 26 2004 882 893
4. M.G. Anderson, K.E. Scoggin, C.M. Simbulan-Rosenthal, and J.A. Steadman Identification of poly(ADP-ribose) polymerase as a transcriptional coactivator of the human T-cell leukemia virus type 1 Tax protein J. Virol. 74 2000 2169 2177
5. H.J. Baek, S. Malik, J. Qin, and R.G. Roeder Requirement of TRAP/mediator for both activator-independent and activator-dependent transcription in conjunction with TFIID-associated TAF(II)s Mol. Cell. Biol. 22 2002 2842 2852
6. P. Bouillet, M. Oulad-Abdelghani, S. Vicaire, J.M. Garnier, B. Schuhbaur, P. Dolle, and P. Chambon Efficient cloning of cDNAs of retinoic acid-responsive genes in P19 embryonal carcinoma cells and characterization of a novel mouse gene, Stra1 (mouse LERK-2/Eplg2) Dev. Biol. 170 1995 420 433
7. T.G. Boyer, M.E. Martin, E. Lees, R.P. Ricciardi, and A.J. Berk Mammalian Srb/Mediator complex is targeted by adenovirus E1A protein Nature 399 1999 276 279
8. D. Burakov, C.W. Wong, C. Rachez, B.J. Cheskis, and L.P. Freedman Functional interactions between the estrogen receptor and DRIP205, a subunit of the heteromeric DRIP coactivator complex J. Biol. Chem. 275 2000 20928 20934
9. A.J. Butler, and C.P. Ordahl Poly(ADP-ribose) polymerase binds with transcription enhancer factor 1 to MCAT1 elements to regulate muscle-specific transcription Mol. Cell. Biol. 19 1999 296 306
10. M.N. Cervellera, and A. Sala Poly(ADP-ribose) polymerase is a B-MYB coactivator J. Biol. Chem. 275 2000 10692 10696
11. D. D'Amours, S. Desnoyers, I. D'Silva, and G.G. Poirier Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions Biochem. J. 342 1999 249 268
12. J.M. de Murcia, C. Niedergang, C. Trucco, M. Ricoul, B. Dutrillaux, M. Mark, F.J. Oliver, M. Masson, A. Dierich, and M. LeMeur Requirement of poly(ADP-ribose) polymerase in recovery from DNA damage in mice and in cells Proc. Natl. Acad. Sci. USA 94 1997 7303 7307
13. J.D. Dignam, R.M. Lebovitz, and R.G. Roeder Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei Nucleic Acids Res. 11 1983 1475 1489
14. F.J. Dilworth, C. Fromental-Ramain, E. Remboutsika, A. Benecke, and P. Chambon Ligand-dependent activation of transcription in vitro by retinoic acid receptor alpha/retinoid X receptor alpha heterodimers that mimics transactivation by retinoids in vivo Proc. Natl. Acad. Sci. USA 96 1999 1995 2000
15. F.J. Dilworth, C. Fromental-Ramain, K. Yamamoto, and P. Chambon ATP-driven chromatin remodeling activity and histone acetyltransferases act sequentially during transactivation by RAR/RXR In vitro Mol. Cell 6 2000 1049 1058
16. J.D. Fondell, H. Ge, and R.G. Roeder Ligand induction of a transcriptionally active thyroid hormone receptor coactivator complex Proc. Natl. Acad. Sci. USA 93 1996 8329 8333
17. H.A.C. Giner, F. Simonin, G. de Murcia, and J. Menissier-de Murcia Overproduction and large-scale purification of the human poly(ADP-ribose) polymerase using a baculovirus expression system Gene 114 1992 279 283
18. C.K. Glass, and M.G. Rosenfeld The coregulator exchange in transcriptional functions of nuclear receptors Genes Dev. 14 2000 121 141
19. W. Gu, S. Malik, M. Ito, C.X. Yuan, J.D. Fondell, X. Zhang, E. Martinez, J. Qin, and R.G. Roeder A novel human SRB/MED-containing cofactor complex, SMCC, involved in transcription regulation Mol. Cell 3 1999 97 108
20. M. Hampsey, and D. Reinberg RNA polymerase II as a control panel for multiple coactivator complexes Curr. Opin. Genet. Dev. 9 1999 132 139
21. P.O. Hassa, C. Buerki, C. Lombardi, R. Imhof, and M.O. Hottiger Transcriptional coactivation of nuclear factor-kappaB-dependent gene expression by p300 is regulated by poly(ADP)-ribose polymerase-1 J. Biol. Chem. 278 2003 45145 45153
22. M. Ito, C.X. Yuan, H.J. Okano, R.B. Darnell, and R.G. Roeder Involvement of the TRAP220 component of the TRAP/SMCC coactivator complex in embryonic development and thyroid hormone action Mol. Cell 5 2000 683 693
23. K.M. Johnson, J. Wang, A. Smallwood, C. Arayata, and M. Carey TFIID and human mediator coactivator complexes assemble cooperatively on promoter DNA Genes Dev. 16 2002 1852 1863
24. E.M. Jones-Villeneuve, M.W. McBurney, K.A. Rogers, and V.I. Kalnins Retinoic acid induces embryonal carcinoma cells to differentiate into neurons and glial cells J. Cell Biol. 94 1982 253 262
25. B.G. Ju, D. Solum, E.J. Song, K.J. Lee, D.W. Rose, C.K. Glass, and M.G. Rosenfeld Activating the PARP-1 sensor component of the Groucho/ TLE1 corepressor complex mediates a CaMKinase IIdelta-dependent neurogenic gene activation pathway Cell 119 2004 815 829
26. P. Kastner, M. Mark, and P. Chambon Nonsteroid nuclear receptors: what are genetic studies telling us about their role in real life? Cell 83 1995 859 869
27. T.K. Kim, R.H. Ebright, and D. Reinberg Mechanism of ATP-dependent promoter melting by transcription factor IIH Science 288 2000 1418 1422
28. T.W. Kim, Y.J. Kwon, J.M. Kim, Y.H. Song, S.N. Kim, and Y.J. Kim MED16 and MED23 of Mediator are coactivators of lipopolysaccharide- and heat-shock-induced transcriptional activators Proc. Natl. Acad. Sci. USA 101 2004 12153 12158
29. Y.J. Kim, S. Bjorklund, Y. Li, M.H. Sayre, and R.D. Kornberg A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II Cell 77 1994 599 608
30. W.L. Kraus, and J.T. Lis PARP goes transcription Cell 113 2003 677 683
31. B. Lefebvre, C. Brand, P. Lefebvre, and K. Ozato Chromosomal integration of retinoic acid response elements prevents cooperative transcriptional activation by retinoic acid receptor and retinoid X receptor Mol. Cell. Biol. 22 2002 1446 1459
32. B.A. Lewis, and D. Reinberg The mediator coactivator complex: functional and physical roles in transcriptional regulation J. Cell Sci. 116 2003 3667 3675
33. B.A. Lewis, T.K. Kim, and S.H. Orkin A downstream element in the human beta-globin promoter: evidence of extended sequence-specific transcription factor IID contacts Proc. Natl. Acad. Sci. USA 97 2000 7172 7177
34. D. Lohnes, P. Kastner, A. Dierich, M. Mark, M. LeMeur, and P. Chambon Function of retinoic acid receptor gamma in the mouse Cell 73 1993 643 658
35. D. Lohnes, M. Mark, C. Mendelsohn, P. Dolle, A. Dierich, P. Gorry, A. Gansmuller, and P. Chambon Function of the retinoic acid receptors (RARs) during development (I). Craniofacial and skeletal abnormalities in RAR double mutants Development 120 1994 2723 2748
36. E. Maldonado, R. Drapkin, and D. Reinberg Purification of human RNA polymerase II and general transcription factors Methods Enzymol. 274 1996 72 100
37. S. Malik, and R.G. Roeder Transcriptional regulation through Mediator-like coactivators in yeast and metazoan cells Trends Biochem. Sci. 25 2000 277 283
38. S. Malik, W. Gu, W. Wu, J. Qin, and R.G. Roeder The USA-derived transcriptional coactivator PC2 is a submodule of TRAP/SMCC and acts synergistically with other PCs Mol. Cell 5 2000 753 760
39. D.J. Mangelsdorf, and R.M. Evans The RXR heterodimers and orphan receptors Cell 83 1995 841 850
40. N.J. McKenna, and B.W. O'Malley Combinatorial control of gene expression by nuclear receptors and coregulators Cell 108 2002 465 474
41. M. Meisterernst, G. Stelzer, and R.G. Roeder Poly(ADP-ribose) polymerase enhances activator-dependent transcription in vitro Proc. Natl. Acad. Sci. USA 94 1997 2261 2265
42. C. Mendelsohn, D. Lohnes, D. Decimo, T. Lufkin, M. LeMeur, P. Chambon, and M. Mark Function of the retinoic acid receptors (RARs) during development (II). Multiple abnormalities at various stages of organogenesis in RAR double mutants Development 120 1994 2749 2771
43. C. Mendelsohn, M. Mark, P. Dolle, A. Dierich, M.P. Gaub, A. Krust, C. Lampron, and P. Chambon Retinoic acid receptor beta 2 (RAR beta 2) null mutant mice appear normal Dev. Biol. 166 1994 246 258
44. X. Mo, E. Kowenz-Leutz, H. Xu, and A. Leutz Ras induces mediator complex exchange on C/EBP beta Mol. Cell 13 2004 241 250
45. M. Molinete, W. Vermeulen, A. Burkle, J. Menissier-de Murcia, J.H. Kupper, J.H. Hoeijmakers, and G. de Murcia Overproduction of the poly(ADP-ribose) polymerase DNA-binding domain blocks alkylation-induced DNA repair synthesis in mammalian cells EMBO J. 12 1993 2109 2117
46. A.M. Naar, P.A. Beaurang, S. Zhou, S. Abraham, W. Solomon, and R. Tjian Composite co-activator ARC mediates chromatin-directed transcriptional activation Nature 398 1999 828 832
47. S.L. Oei, J. Griesenbeck, M. Schweiger, and M. Ziegler Regulation of RNA polymerase II-dependent transcription by poly(ADP-ribosyl)ation of transcription factors J. Biol. Chem. 273 1998 31644 31647
48. G. Orphanides, G. LeRoy, C.H. Chang, D.S. Luse, and D. Reinberg FACT, a factor that facilitates transcript elongation through nucleosomes Cell 92 1998 105 116
49. C. Rachez, and L.P. Freedman Mediator complexes and transcription Curr. Opin. Cell Biol. 13 2001 274 280
50. C. Rachez, B.D. Lemon, Z. Suldan, V. Bromleigh, M. Gamble, A.M. Naar, H. Erdjument-Bromage, P. Tempst, and L.P. Freedman Ligand-dependent transcription activation by nuclear receptors requires the DRIP complex Nature 398 1999 824 828
51. Y. Ren, E. Behre, Z. Ren, J. Zhang, Q. Wang, and J.D. Fondell Specific structural motifs determine TRAP220 interactions with nuclear hormone receptors Mol. Cell. Biol. 20 2000 5433 5446
52. S. Ryu, S. Zhou, A.G. Ladurner, and R. Tjian The transcriptional cofactor complex CRSP is required for activity of the enhancer-binding protein Sp1 Nature 397 1999 446 450
53. V. Schreiber, J.C. Ame, P. Dolle, I. Schultz, B. Rinaldi, V. Fraulob, J. Menissier-de Murcia, and G. de Murcia Poly(ADP-ribose) polymerase-2 (PARP-2) is required for efficient base excision DNA repair in association with PARP-1 and XRCC1 J. Biol. Chem. 277 2002 23028 23036
54. S. Shall, and G. de Murcia Poly(ADP-ribose) polymerase-1: what have we learned from the deficient mouse model? Mutat. Res. 460 2000 1 15
55. D. Sharma, and J.D. Fondell Ordered recruitment of histone acetyltransferases and the TRAP/Mediator complex to thyroid hormone-responsive promoters in vivo Proc. Natl. Acad. Sci. USA 99 2002 7934 7939
56. C.M. Simbulan-Rosenthal, D.S. Rosenthal, R. Luo, R. Samara, L.A. Espinoza, P.O. Hassa, M.O. Hottiger, and M.E. Smulson PARP-1 binds E2F-1 independently of its DNA binding and catalytic domains, and acts as a novel coactivator of E2F-1-mediated transcription during re-entry of quiescent cells into S phase Oncogene 22 2003 8460 8471
57. I.S. Skerjanc Cardiac and skeletal muscle development in P19 embryonal carcinoma cells Trends Cardiovasc. Med. 9 1999 139 143
58. X. Sun, Y. Zhang, H. Cho, P. Rickert, E. Lees, W. Lane, and D. Reinberg NAT, a human complex containing Srb polypeptides that functions as a negative regulator of activated transcription Mol. Cell 2 1998 213 222
59. D.J. Taatjes, and R. Tjian Structure and function of CRSP/Med2; a promoter-selective transcriptional coactivator complex Mol. Cell 14 2004 675 683
60. D.J. Taatjes, A.M. Naar, F. Andel 3rd, E. Nogales, and R. Tjian Structure, function, and activator-induced conformations of the CRSP coactivator Science 295 2002 1058 1062
61. D.J. Taatjes, M.T. Marr, and R. Tjian Regulatory diversity among metazoan co-activator complexes Nat. Rev. Mol. Cell Biol. 5 2004 403 410
62. A. Tulin, and A. Spradling Chromatin loosening by poly(ADP)-ribose polymerase (PARP) at Drosophila puff loci Science 299 2003 560 562
63. A. Tulin, D. Stewart, and A. Spradling The Drosophila heterochromatic gene encoding poly(ADP-ribose) polymerase (PARP) is required to modulate chromatin structure during development Genes Dev. 16 2002 2108 2119
64. A. Vaquero, M. Scher, D. Lee, H. Erdjument-Bromage, P. Tempst, and D. Reinberg Human SirT1 Interacts with Histone H1 and Promotes Formation of Facultative Heterochromatin Mol. Cell 16 2004 93 105
65. O. Wada, H. Oishi, I. Takada, J. Yanagisawa, T. Yano, and S. Kato BRCA1 function mediates a TRAP/DRIP complex through direct interaction with TRAP220 Oncogene 23 2004 6000 6005
66. Z.Q. Wang, B. Auer, L. Stingl, H. Berghammer, D. Haidacher, M. Schweiger, and E.F. Wagner Mice lacking ADPRT and poly(ADP-ribosyl)ation develop normally but are susceptible to skin disease Genes Dev. 9 1995 509 520
67. Q. Wu, R. Burghardt, and S. Safe Vitamin D-interacting protein 205 (DRIP205) coactivation of estrogen receptor alpha (ERalpha) involves multiple domains of both proteins J. Biol. Chem. 279 2004 53602 53612
68. H. Yamaguchi, K. Tanaka, Y. Kitagawa, and K. Miki A PEA3 site flanked by SP1, SP4, and GATA sites positively regulates the differentiation-dependent expression of Brachyury in embryonal carcinoma P19 cells Biochem. Biophys. Res. Commun. 254 1999 542 547
69. W. Yu, V. Ginjala, V. Pant, I. Chernukhin, J. Whitehead, F. Docquier, D. Farrar, G. Tavoosidana, R. Mukhopadhyay, and C. Kanduri Poly(ADP-ribosyl)ation regulates CTCF-dependent chromatin insulation Nat. Genet. 36 2004 1105 1110
70. C.X. Yuan, M. Ito, J.D. Fondell, Z.Y. Fu, and R.G. Roeder The TRAP220 component of a thyroid hormone receptor-associated protein (TRAP) coactivator complex interacts directly with nuclear receptors in a ligand-dependent fashion Proc. Natl. Acad. Sci. USA 95 1998 7939 7944