-
1
-
-
80053324376
-
Molecular aspects of defence priming.
-
10.1016/j.tplants.2011.06.004, 21782492
-
Conrath U. Molecular aspects of defence priming. Trends Plant Sci 2011, 16:524-531. 10.1016/j.tplants.2011.06.004, 21782492.
-
(2011)
Trends Plant Sci
, vol.16
, pp. 524-531
-
-
Conrath, U.1
-
2
-
-
84866161087
-
Understanding the molecular pathways associated with seed vigor.
-
Ventura L, Dona M, Macovei A, Carbonera D, Buttafava A, Mondoni A, Rossi G, Balestrazzi A. Understanding the molecular pathways associated with seed vigor. Plant Physiol Biochem 2012, 60:196-206.
-
(2012)
Plant Physiol Biochem
, vol.60
, pp. 196-206
-
-
Ventura, L.1
Dona, M.2
Macovei, A.3
Carbonera, D.4
Buttafava, A.5
Mondoni, A.6
Rossi, G.7
Balestrazzi, A.8
-
3
-
-
0038676899
-
Acquired tolerance to temperature extremes.
-
10.1016/S1360-1385(03)00047-5, 12711230
-
Sung DY, Kaplan F, Lee KJ, Guy CL. Acquired tolerance to temperature extremes. Trends Plant Sci 2003, 8:179-187. 10.1016/S1360-1385(03)00047-5, 12711230.
-
(2003)
Trends Plant Sci
, vol.8
, pp. 179-187
-
-
Sung, D.Y.1
Kaplan, F.2
Lee, K.J.3
Guy, C.L.4
-
4
-
-
70350225295
-
Chromatin indexing in Arabidopsis: an epigenomic tale of tails and more.
-
10.1016/j.tig.2009.09.013, 19850370
-
Roudier F, Teixeira FK, Colot V. Chromatin indexing in Arabidopsis: an epigenomic tale of tails and more. Trends Genet 2009, 25:511-517. 10.1016/j.tig.2009.09.013, 19850370.
-
(2009)
Trends Genet
, vol.25
, pp. 511-517
-
-
Roudier, F.1
Teixeira, F.K.2
Colot, V.3
-
5
-
-
34848903233
-
Role of histone and DNA methylation in gene regulation.
-
10.1016/j.pbi.2007.06.008, 17692561
-
Vaillant I, Paszkowski J. Role of histone and DNA methylation in gene regulation. Curr Opin Plant Biol 2007, 10:528-533. 10.1016/j.pbi.2007.06.008, 17692561.
-
(2007)
Curr Opin Plant Biol
, vol.10
, pp. 528-533
-
-
Vaillant, I.1
Paszkowski, J.2
-
6
-
-
67651227407
-
Assessing the impact of transgenerational epigenetic variation on complex traits.
-
10.1371/journal.pgen.1000530, 2696037, 19557164
-
Johannes F, Porcher E, Teixeira FK, Saliba-Colombani V, Simon M, Agier N, Bulski A, Albuisson J, Heredia F, Audigier P, Bouchez D, Dillmann C, Guerche P, Hospital F, Colot V. Assessing the impact of transgenerational epigenetic variation on complex traits. PLoS Genet 2009, 5:e1000530. 10.1371/journal.pgen.1000530, 2696037, 19557164.
-
(2009)
PLoS Genet
, vol.5
-
-
Johannes, F.1
Porcher, E.2
Teixeira, F.K.3
Saliba-Colombani, V.4
Simon, M.5
Agier, N.6
Bulski, A.7
Albuisson, J.8
Heredia, F.9
Audigier, P.10
Bouchez, D.11
Dillmann, C.12
Guerche, P.13
Hospital, F.14
Colot, V.15
-
7
-
-
73949123765
-
Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yield.
-
2774259, 19897729
-
Hauben M, Haesendonckx B, Standaert E, Van Der Kelen K, Azmi A, Akpo H, Van Breusegem F, Guisez Y, Bots M, Lambert B, Laga B, De Block M. Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yield. Proc Natl Acad Sci USA 2009, 106:20109-20114. 2774259, 19897729.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 20109-20114
-
-
Hauben, M.1
Haesendonckx, B.2
Standaert, E.3
Van Der Kelen, K.4
Azmi, A.5
Akpo, H.6
Van Breusegem, F.7
Guisez, Y.8
Bots, M.9
Lambert, B.10
Laga, B.11
De Block, M.12
-
8
-
-
84856091218
-
The progeny of Arabidopsis thaliana plants exposed to salt exhibit changes in DNA methylation, histone modifications and gene expression.
-
10.1371/journal.pone.0030515, 3264603, 22291972
-
Bilichak A, Ilnystkyy Y, Hollunder J, Kovalchuk I. The progeny of Arabidopsis thaliana plants exposed to salt exhibit changes in DNA methylation, histone modifications and gene expression. PLoS One 2012, 7:e30515. 10.1371/journal.pone.0030515, 3264603, 22291972.
-
(2012)
PLoS One
, vol.7
-
-
Bilichak, A.1
Ilnystkyy, Y.2
Hollunder, J.3
Kovalchuk, I.4
-
9
-
-
84856575118
-
Next-generation systemic acquired resistance.
-
10.1104/pp.111.187468, 3271772, 22147520
-
Luna E, Bruce TJA, Roberts MR, Flors V, Ton J. Next-generation systemic acquired resistance. Plant Physiol 2012, 158:844-853. 10.1104/pp.111.187468, 3271772, 22147520.
-
(2012)
Plant Physiol
, vol.158
, pp. 844-853
-
-
Luna, E.1
Bruce, T.J.A.2
Roberts, M.R.3
Flors, V.4
Ton, J.5
-
10
-
-
77953013935
-
Transgenerational inheritance and resetting of stress-induced loss of epigenetic gene silencing in Arabidopsis.
-
10.1093/mp/ssq014, 2877484, 20410255
-
Lang-Mladek C, Popova O, Kiok K, Berlinger M, Rakic B, Aufsatz W, Jonak C, Hauser MT, Luschnig C. Transgenerational inheritance and resetting of stress-induced loss of epigenetic gene silencing in Arabidopsis. Mol Plant 2010, 3:594-602. 10.1093/mp/ssq014, 2877484, 20410255.
-
(2010)
Mol Plant
, vol.3
, pp. 594-602
-
-
Lang-Mladek, C.1
Popova, O.2
Kiok, K.3
Berlinger, M.4
Rakic, B.5
Aufsatz, W.6
Jonak, C.7
Hauser, M.T.8
Luschnig, C.9
-
11
-
-
77949336019
-
Stress-induced DNA methylation changes and their heritability in asexual dandelions.
-
10.1111/j.1469-8137.2009.03121.x, 20003072
-
Verhoeven KJF, Jansen JJ, van Dijk PJ, Biere A. Stress-induced DNA methylation changes and their heritability in asexual dandelions. New Phytol 2010, 185:1108-1118. 10.1111/j.1469-8137.2009.03121.x, 20003072.
-
(2010)
New Phytol
, vol.185
, pp. 1108-1118
-
-
Verhoeven, K.J.F.1
Jansen, J.J.2
van Dijk, P.J.3
Biere, A.4
-
12
-
-
84866297414
-
Transgenerational inheritance of modified DNA methylation patterns and enhanced tolerance induced by heavy metal stress in rice (Oryza sativa L.).
-
10.1371/journal.pone.0041143, 3439459, 22984395
-
Ou XF, Zhang YH, Xu CM, Lin XY, Zang Q, Zhuang TT, Jiang LL, von Wettstein D, Liu B. Transgenerational inheritance of modified DNA methylation patterns and enhanced tolerance induced by heavy metal stress in rice (Oryza sativa L.). PLoS One 2012, 7:e41143. 10.1371/journal.pone.0041143, 3439459, 22984395.
-
(2012)
PLoS One
, vol.7
-
-
Ou, X.F.1
Zhang, Y.H.2
Xu, C.M.3
Lin, X.Y.4
Zang, Q.5
Zhuang, T.T.6
Jiang, L.L.7
von Wettstein, D.8
Liu, B.9
-
13
-
-
79953746026
-
An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.
-
10.1038/nature09861, 21399627
-
Ito H, Gaubert H, Bucher E, Mirouze M, Vaillant I, Paszkowski J. An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress. Nature 2011, 472:115-119. 10.1038/nature09861, 21399627.
-
(2011)
Nature
, vol.472
, pp. 115-119
-
-
Ito, H.1
Gaubert, H.2
Bucher, E.3
Mirouze, M.4
Vaillant, I.5
Paszkowski, J.6
-
14
-
-
84861084790
-
Stress-induced chromatin changes: a critical view on their heritability.
-
10.1093/pcp/pcs044, 3345370, 22457398
-
Pecinka A, Scheid OM. Stress-induced chromatin changes: a critical view on their heritability. Plant Cell Physiol 2012, 53:801-808. 10.1093/pcp/pcs044, 3345370, 22457398.
-
(2012)
Plant Cell Physiol
, vol.53
, pp. 801-808
-
-
Pecinka, A.1
Scheid, O.M.2
-
15
-
-
84869496854
-
Epigenetic variation: origin and transgenerational inheritance.
-
10.1016/j.pbi.2012.08.004, 22939250
-
Becker C, Weigel D. Epigenetic variation: origin and transgenerational inheritance. Curr Opin Plant Biol 2012, 15:562-567. 10.1016/j.pbi.2012.08.004, 22939250.
-
(2012)
Curr Opin Plant Biol
, vol.15
, pp. 562-567
-
-
Becker, C.1
Weigel, D.2
-
16
-
-
80054837794
-
Transgenerational epigenetic instability is a source of novel methylation variants.
-
10.1126/science.1212959, 3210014, 21921155
-
Schmitz RJ, Schultz MD, Lewsey MG, O'Malley RC, Urich MA, Libiger O, Schork NJ, Ecker JR. Transgenerational epigenetic instability is a source of novel methylation variants. Science 2011, 334:369-373. 10.1126/science.1212959, 3210014, 21921155.
-
(2011)
Science
, vol.334
, pp. 369-373
-
-
Schmitz, R.J.1
Schultz, M.D.2
Lewsey, M.G.3
O'Malley, R.C.4
Urich, M.A.5
Libiger, O.6
Schork, N.J.7
Ecker, J.R.8
-
17
-
-
84870231986
-
Epigenetic variation creates potential for evolution of plant phenotypic plasticity.
-
10.1111/nph.12010, 23121242
-
Zhang YY, Fischer M, Colot V, Bossdorf O. Epigenetic variation creates potential for evolution of plant phenotypic plasticity. New Phytol 2013, 197:314-322. 10.1111/nph.12010, 23121242.
-
(2013)
New Phytol
, vol.197
, pp. 314-322
-
-
Zhang, Y.Y.1
Fischer, M.2
Colot, V.3
Bossdorf, O.4
-
18
-
-
84867390947
-
Epialleles in plant evolution.
-
10.1186/gb-2012-13-10-249, 23058244
-
Weigel D, Colot V. Epialleles in plant evolution. Genome Biol 2012, 13:249. 10.1186/gb-2012-13-10-249, 23058244.
-
(2012)
Genome Biol
, vol.13
, pp. 249
-
-
Weigel, D.1
Colot, V.2
-
19
-
-
79961172475
-
A Polycomb-based switch underlying quantitative epigenetic memory.
-
10.1038/nature10241, 21785438
-
Angel A, Song J, Dean C, Howard M. A Polycomb-based switch underlying quantitative epigenetic memory. Nature 2011, 476:105-108. 10.1038/nature10241, 21785438.
-
(2011)
Nature
, vol.476
, pp. 105-108
-
-
Angel, A.1
Song, J.2
Dean, C.3
Howard, M.4
-
20
-
-
78650853222
-
Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response.
-
10.1038/embor.2010.186, 3024125, 21132017
-
Jaskiewicz M, Conrath U, Peterhansel C. Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response. Embo Reports 2011, 12:50-55. 10.1038/embor.2010.186, 3024125, 21132017.
-
(2011)
Embo Reports
, vol.12
, pp. 50-55
-
-
Jaskiewicz, M.1
Conrath, U.2
Peterhansel, C.3
-
21
-
-
84864679478
-
Widespread dynamic DNA methylation in response to biotic stress.
-
10.1073/pnas.1209329109, 3420206, 22733782
-
Dowen RH, Pelizzola M, Schmitz RJ, Lister R, Dowen JM, Nery JR, Dixon JE, Ecker JR. Widespread dynamic DNA methylation in response to biotic stress. Proc Natl Acad Sci USA 2012, 109:E2183-E2191. 10.1073/pnas.1209329109, 3420206, 22733782.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
-
-
Dowen, R.H.1
Pelizzola, M.2
Schmitz, R.J.3
Lister, R.4
Dowen, J.M.5
Nery, J.R.6
Dixon, J.E.7
Ecker, J.R.8
-
22
-
-
84873475717
-
Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense.
-
10.1073/pnas.1211757110, 23335630
-
Yu A, Lepère G, Jay F, Wang J, Bapaume L, Wang Y, Abraham A-L, Penterman J, Fischer RL, Voinnet O, Navarro L. Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense. Proc Natl Acad Sci USA 2013, 110:2389-2394. 10.1073/pnas.1211757110, 23335630.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 2389-2394
-
-
Yu, A.1
Lepère, G.2
Jay, F.3
Wang, J.4
Bapaume, L.5
Wang, Y.6
Abraham, A.-L.7
Penterman, J.8
Fischer, R.L.9
Voinnet, O.10
Navarro, L.11
-
23
-
-
84871422673
-
Genome-wide profiling of histone H3K4-tri-methylation and gene expression in rice under drought stress.
-
10.1007/s11103-012-9990-2, 23192746
-
Zong W, Zhong XC, You J, Xiong LZ. Genome-wide profiling of histone H3K4-tri-methylation and gene expression in rice under drought stress. Plant Mol Biol 2013, 81:175-188. 10.1007/s11103-012-9990-2, 23192746.
-
(2013)
Plant Mol Biol
, vol.81
, pp. 175-188
-
-
Zong, W.1
Zhong, X.C.2
You, J.3
Xiong, L.Z.4
-
24
-
-
54149108452
-
Alterations of lysine modifications on the histone H3 N-tail under drought stress conditions in Arabidopsis thaliana.
-
10.1093/pcp/pcn133, 18779215
-
Kim JM, To TK, Ishida J, Morosawa T, Kawashima M, Matsui A, Toyoda T, Kimura H, Shinozaki K, Seki M. Alterations of lysine modifications on the histone H3 N-tail under drought stress conditions in Arabidopsis thaliana. Plant Cell Physiol 2008, 49:1580-1588. 10.1093/pcp/pcn133, 18779215.
-
(2008)
Plant Cell Physiol
, vol.49
, pp. 1580-1588
-
-
Kim, J.M.1
To, T.K.2
Ishida, J.3
Morosawa, T.4
Kawashima, M.5
Matsui, A.6
Toyoda, T.7
Kimura, H.8
Shinozaki, K.9
Seki, M.10
-
25
-
-
78049400268
-
Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana.
-
10.1186/1471-2229-10-238, 3095321, 21050490
-
Dijk K, Ding Y, Malkaram S, Riethoven JJM, Liu R, Yang JY, Laczko P, Chen H, Xia YN, Ladunga I, Avramova Z, Fromm M. Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana. BMC Plant Biology 2010, 10:238. 10.1186/1471-2229-10-238, 3095321, 21050490.
-
(2010)
BMC Plant Biology
, vol.10
, pp. 238
-
-
Dijk, K.1
Ding, Y.2
Malkaram, S.3
Riethoven, J.J.M.4
Liu, R.5
Yang, J.Y.6
Laczko, P.7
Chen, H.8
Xia, Y.N.9
Ladunga, I.10
Avramova, Z.11
Fromm, M.12
-
26
-
-
70349522138
-
Histone occupancy-dependent and -independent removal of H3K27 trimethylation at cold-responsive genes in Arabidopsis.
-
10.1111/j.1365-313X.2009.03938.x, 19500304
-
Kwon CS, Lee D, Choi G, Chung WI. Histone occupancy-dependent and -independent removal of H3K27 trimethylation at cold-responsive genes in Arabidopsis. Plant J 2009, 60:112-121. 10.1111/j.1365-313X.2009.03938.x, 19500304.
-
(2009)
Plant J
, vol.60
, pp. 112-121
-
-
Kwon, C.S.1
Lee, D.2
Choi, G.3
Chung, W.I.4
-
27
-
-
84858067018
-
Genome-wide evaluation of histone methylation changes associated with leaf senescence in Arabidopsis.
-
10.1371/journal.pone.0033151, 3299739, 22427974
-
Brusslan JA, Alvarez-Canterbury AMR, Nair NU, Rice JC, Hitchler MJ, Pellegrini M. Genome-wide evaluation of histone methylation changes associated with leaf senescence in Arabidopsis. PLoS One 2012, 7:e33151. 10.1371/journal.pone.0033151, 3299739, 22427974.
-
(2012)
PLoS One
, vol.7
-
-
Brusslan, J.A.1
Alvarez-Canterbury, A.M.R.2
Nair, N.U.3
Rice, J.C.4
Hitchler, M.J.5
Pellegrini, M.6
-
28
-
-
79952291949
-
Two distinct roles of ARABIDOPSIS HOMOLOG OF TRITHORAX1 (ATX1) at promoters and within transcribed regions of ATX1-regulated genes.
-
10.1105/tpc.110.080150, 3051232, 21266657
-
Ding Y, Avramova Z, Fromm M. Two distinct roles of ARABIDOPSIS HOMOLOG OF TRITHORAX1 (ATX1) at promoters and within transcribed regions of ATX1-regulated genes. Plant Cell 2011, 23:350-363. 10.1105/tpc.110.080150, 3051232, 21266657.
-
(2011)
Plant Cell
, vol.23
, pp. 350-363
-
-
Ding, Y.1
Avramova, Z.2
Fromm, M.3
-
29
-
-
79956066320
-
Integrative epigenomic mapping defines four main chromatin states in Arabidopsis.
-
10.1038/emboj.2011.103, 3098477, 21487388
-
Roudier F, Ahmed I, Berard C, Sarazin A, Mary-Huard T, Cortijo S, Bouyer D, Caillieux E, Duvernois-Berthet E, Al-Shikhley L, Giraut L, Despres B, Drevensek S, Barneche F, Derozier S, Brunaud V, Aubourg S, Schnittger A, Bowler C, Martin-Magniette ML, Robin S, Caboche M, Colot V. Integrative epigenomic mapping defines four main chromatin states in Arabidopsis. EMBO J 2011, 30:1928-1938. 10.1038/emboj.2011.103, 3098477, 21487388.
-
(2011)
EMBO J
, vol.30
, pp. 1928-1938
-
-
Roudier, F.1
Ahmed, I.2
Berard, C.3
Sarazin, A.4
Mary-Huard, T.5
Cortijo, S.6
Bouyer, D.7
Caillieux, E.8
Duvernois-Berthet, E.9
Al-Shikhley, L.10
Giraut, L.11
Despres, B.12
Drevensek, S.13
Barneche, F.14
Derozier, S.15
Brunaud, V.16
Aubourg, S.17
Schnittger, A.18
Bowler, C.19
Martin-Magniette, M.L.20
Robin, S.21
Caboche, M.22
Colot, V.23
more..
-
30
-
-
77952500831
-
Histone Methylation in Higher Plants.
-
Palo Alto, CA: Annual Reviews, Merchant S, Briggs WR, Ort D, 10.1146/annurev.arplant.043008.091939, 20192747
-
Liu CY, Lu FL, Cui X, Cao XF. Histone Methylation in Higher Plants. Annual Review of Plant Biology 2010, 61:395-420. Palo Alto, CA: Annual Reviews, Merchant S, Briggs WR, Ort D, 10.1146/annurev.arplant.043008.091939, 20192747.
-
(2010)
Annual Review of Plant Biology
, vol.61
, pp. 395-420
-
-
Liu, C.Y.1
Lu, F.L.2
Cui, X.3
Cao, X.F.4
-
31
-
-
70349739736
-
The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets.
-
10.1093/bioinformatics/btp472, 2759552, 19654113
-
Nicol JW, Helt GA, Blanchard SG, Raja A, Loraine AE. The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets. Bioinformatics 2009, 25:2730-2731. 10.1093/bioinformatics/btp472, 2759552, 19654113.
-
(2009)
Bioinformatics
, vol.25
, pp. 2730-2731
-
-
Nicol, J.W.1
Helt, G.A.2
Blanchard, S.G.3
Raja, A.4
Loraine, A.E.5
-
32
-
-
34249068213
-
Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis.
-
Zhang XY, Clarenz O, Cokus S, Bernatavichute YV, Pellegrini M, Goodrich J, Jacobsen SE. Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol 2007, 5:1026-1035.
-
(2007)
PLoS Biol
, vol.5
, pp. 1026-1035
-
-
Zhang, X.Y.1
Clarenz, O.2
Cokus, S.3
Bernatavichute, Y.V.4
Pellegrini, M.5
Goodrich, J.6
Jacobsen, S.E.7
-
33
-
-
52349089796
-
Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana.
-
Bernatavichute YV, Zhang XY, Cokus S, Pellegrini M, Jacobsen SE. Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS One 2008, 8:e3156.
-
(2008)
PLoS One
, vol.8
-
-
Bernatavichute, Y.V.1
Zhang, X.Y.2
Cokus, S.3
Pellegrini, M.4
Jacobsen, S.E.5
-
34
-
-
67650091251
-
Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana.
-
10.1186/gb-2009-10-6-r62, 2718496, 19508735
-
Zhang XY, Bernatavichute YV, Cokus S, Pellegrini M, Jacobsen SE. Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biol 2009, 10:R62. 10.1186/gb-2009-10-6-r62, 2718496, 19508735.
-
(2009)
Genome Biol
, vol.10
-
-
Zhang, X.Y.1
Bernatavichute, Y.V.2
Cokus, S.3
Pellegrini, M.4
Jacobsen, S.E.5
-
35
-
-
67650711619
-
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data.
-
10.1093/bioinformatics/btp340, 2732366, 19505939
-
Zang CZ, Schones DE, Zeng C, Cui KR, Zhao KJ, Peng WQ. A clustering approach for identification of enriched domains from histone modification ChIP-Seq data. Bioinformatics 2009, 25:1952-1958. 10.1093/bioinformatics/btp340, 2732366, 19505939.
-
(2009)
Bioinformatics
, vol.25
, pp. 1952-1958
-
-
Zang, C.Z.1
Schones, D.E.2
Zeng, C.3
Cui, K.R.4
Zhao, K.J.5
Peng, W.Q.6
-
36
-
-
53749092745
-
An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data.
-
10.1093/bioinformatics/btn402, 18667444
-
Xu H, Wei CL, Lin F, Sung WK. An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data. Bioinformatics 2008, 24:2344-2349. 10.1093/bioinformatics/btn402, 18667444.
-
(2008)
Bioinformatics
, vol.24
, pp. 2344-2349
-
-
Xu, H.1
Wei, C.L.2
Lin, F.3
Sung, W.K.4
-
37
-
-
84868514154
-
Vernalization - a cold-induced epigenetic switch.
-
10.1242/jcs.084764, 22935652
-
Song J, Angel A, Howard M, Dean C. Vernalization - a cold-induced epigenetic switch. J Cell Sci 2012, 125:3723-3731. 10.1242/jcs.084764, 22935652.
-
(2012)
J Cell Sci
, vol.125
, pp. 3723-3731
-
-
Song, J.1
Angel, A.2
Howard, M.3
Dean, C.4
-
38
-
-
70349952171
-
Role of the polycomb protein EED in the propagation of repressive histone marks.
-
10.1038/nature08398, 19767730
-
Margueron R, Justin N, Ohno K, Sharpe ML, Son J, Drury WJ, Voigt P, Martin SR, Taylor WR, De Marco V, Pirrotta V, Reinberg D, Gamblin SJ. Role of the polycomb protein EED in the propagation of repressive histone marks. Nature 2009, 461:762-767. 10.1038/nature08398, 19767730.
-
(2009)
Nature
, vol.461
, pp. 762-767
-
-
Margueron, R.1
Justin, N.2
Ohno, K.3
Sharpe, M.L.4
Son, J.5
Drury, W.J.6
Voigt, P.7
Martin, S.R.8
Taylor, W.R.9
De Marco, V.10
Pirrotta, V.11
Reinberg, D.12
Gamblin, S.J.13
-
39
-
-
79959741225
-
Arabidopsis REF6 is a histone H3 lysine 27 demethylase.
-
10.1038/ng.854, 21642989
-
Lu FL, Cui X, Zhang SB, Jenuwein T, Cao XF. Arabidopsis REF6 is a histone H3 lysine 27 demethylase. Nat Genet 2011, 43:715-719. 10.1038/ng.854, 21642989.
-
(2011)
Nat Genet
, vol.43
, pp. 715-719
-
-
Lu, F.L.1
Cui, X.2
Zhang, S.B.3
Jenuwein, T.4
Cao, X.F.5
-
40
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
-
Huang DW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Prot 2009, 4:44-57.
-
(2009)
Nat Prot
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
41
-
-
0141790803
-
Transcriptome analysis of root transporters reveals participation of multiple gene families in the response to cation stress.
-
10.1046/j.1365-313X.2003.01839.x, 12969422
-
Maathuis FJM, Filatov V, Herzyk P, Krijger GC, Axelsen KB, Chen SX, Green BJ, Li Y, Madagan KL, Sanchez-Fernandez R, Forde BG, Palmgren MG, Rea PA, Williams LE, Sanders D, Amtmann A. Transcriptome analysis of root transporters reveals participation of multiple gene families in the response to cation stress. Plant J 2003, 35:675-692. 10.1046/j.1365-313X.2003.01839.x, 12969422.
-
(2003)
Plant J
, vol.35
, pp. 675-692
-
-
Maathuis, F.J.M.1
Filatov, V.2
Herzyk, P.3
Krijger, G.C.4
Axelsen, K.B.5
Chen, S.X.6
Green, B.J.7
Li, Y.8
Madagan, K.L.9
Sanchez-Fernandez, R.10
Forde, B.G.11
Palmgren, M.G.12
Rea, P.A.13
Williams, L.E.14
Sanders, D.15
Amtmann, A.16
-
42
-
-
69849087056
-
Establishment of histone modifications after chromatin assembly.
-
10.1093/nar/gkp518, 2731903, 19541851
-
Scharf AND, Barth TK, Imhof A. Establishment of histone modifications after chromatin assembly. Nucleic Acids Res 2009, 37:5032-5040. 10.1093/nar/gkp518, 2731903, 19541851.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5032-5040
-
-
Scharf, A.N.D.1
Barth, T.K.2
Imhof, A.3
-
43
-
-
80052805267
-
Histone modification: cause or cog?
-
10.1016/j.tig.2011.06.006, 21764166
-
Henikoff S, Shilatifard A. Histone modification: cause or cog?. Trends Genet 2011, 27:389-396. 10.1016/j.tig.2011.06.006, 21764166.
-
(2011)
Trends Genet
, vol.27
, pp. 389-396
-
-
Henikoff, S.1
Shilatifard, A.2
-
44
-
-
84873035194
-
The SWI2/SNF2 chromatin remodeling ATPase BRAHMA represses abscisic acid responses in the absence of the stress stimulus in Arabidopsis.
-
10.1105/tpc.112.105114, 23209114
-
Han SK, Sang Y, Rodrigues A, Wu MF, Rodriguez PL, Wagner D, Biol F. The SWI2/SNF2 chromatin remodeling ATPase BRAHMA represses abscisic acid responses in the absence of the stress stimulus in Arabidopsis. Plant Cell 2012, 24:4892-4906. 10.1105/tpc.112.105114, 23209114.
-
(2012)
Plant Cell
, vol.24
, pp. 4892-4906
-
-
Han, S.K.1
Sang, Y.2
Rodrigues, A.3
Wu, M.F.4
Rodriguez, P.L.5
Wagner, D.6
Biol, F.7
-
45
-
-
84856618023
-
Chromatin modifications and remodeling in plant abiotic stress responses.
-
10.1016/j.bbagrm.2011.06.008, 21708299
-
Luo M, Liu XC, Singh P, Cui YH, Zimmerli L, Wu KQ. Chromatin modifications and remodeling in plant abiotic stress responses. Biochim Biophys Acta 2012, 1819:129-136. 10.1016/j.bbagrm.2011.06.008, 21708299.
-
(2012)
Biochim Biophys Acta
, vol.1819
, pp. 129-136
-
-
Luo, M.1
Liu, X.C.2
Singh, P.3
Cui, Y.H.4
Zimmerli, L.5
Wu, K.Q.6
-
46
-
-
33847213574
-
The Na+ transporter AtHKT1;1 controls retrieval of Na+ from the xylem in Arabidopsis.
-
10.1111/j.1365-3040.2007.01637.x, 17324235
-
Davenport RJ, Munoz-Mayor A, Jha D, Essah PA, Rus A, Tester M. The Na+ transporter AtHKT1;1 controls retrieval of Na+ from the xylem in Arabidopsis. Plant Cell Environ 2007, 30:497-507. 10.1111/j.1365-3040.2007.01637.x, 17324235.
-
(2007)
Plant Cell Environ
, vol.30
, pp. 497-507
-
-
Davenport, R.J.1
Munoz-Mayor, A.2
Jha, D.3
Essah, P.A.4
Rus, A.5
Tester, M.6
-
47
-
-
69949167969
-
Shoot Na+ exclusion and increased salinity tolerance engineered by cell type-specific alteration of Na+ transport in Arabidopsis.
-
10.1105/tpc.108.064568, 2729596, 19584143
-
Moller IS, Gilliham M, Jha D, Mayo GM, Roy SJ, Coates JC, Haseloff J, Tester M. Shoot Na+ exclusion and increased salinity tolerance engineered by cell type-specific alteration of Na+ transport in Arabidopsis. Plant Cell 2009, 21:2163-2178. 10.1105/tpc.108.064568, 2729596, 19584143.
-
(2009)
Plant Cell
, vol.21
, pp. 2163-2178
-
-
Moller, I.S.1
Gilliham, M.2
Jha, D.3
Mayo, G.M.4
Roy, S.J.5
Coates, J.C.6
Haseloff, J.7
Tester, M.8
-
48
-
-
0038219634
-
Functional analysis of AtHKT1 in Arabidopsis shows that Na+ recirculation by the phloem is crucial for salt tolerance.
-
10.1093/emboj/cdg207, 156079, 12727868
-
Berthomieu P, Conejero G, Nublat A, Brackenbury WJ, Lambert C, Savio C, Uozumi N, Oiki S, Yamada K, Cellier F, Gosti F, Simonneau T, Essah PA, Tester M, Very AA, Sentenac H, Casse F. Functional analysis of AtHKT1 in Arabidopsis shows that Na+ recirculation by the phloem is crucial for salt tolerance. EMBO J 2003, 22:2004-2014. 10.1093/emboj/cdg207, 156079, 12727868.
-
(2003)
EMBO J
, vol.22
, pp. 2004-2014
-
-
Berthomieu, P.1
Conejero, G.2
Nublat, A.3
Brackenbury, W.J.4
Lambert, C.5
Savio, C.6
Uozumi, N.7
Oiki, S.8
Yamada, K.9
Cellier, F.10
Gosti, F.11
Simonneau, T.12
Essah, P.A.13
Tester, M.14
Very, A.A.15
Sentenac, H.16
Casse, F.17
-
49
-
-
16544382567
-
AtHKT1 facilitates Na+ homeostasis and K+ nutrition in planta.
-
10.1104/pp.104.042234, 523317, 15347798
-
Rus A, Lee BH, Munoz-Mayor A, Sharkhuu A, Miura K, Zhu JK, Bressan RA, Hasegawa PM. AtHKT1 facilitates Na+ homeostasis and K+ nutrition in planta. Plant Physiol 2004, 136:2500-2511. 10.1104/pp.104.042234, 523317, 15347798.
-
(2004)
Plant Physiol
, vol.136
, pp. 2500-2511
-
-
Rus, A.1
Lee, B.H.2
Munoz-Mayor, A.3
Sharkhuu, A.4
Miura, K.5
Zhu, J.K.6
Bressan, R.A.7
Hasegawa, P.M.8
-
50
-
-
79251471479
-
Regulated AtHKT1 gene expression by a distal enhancer element and DNA methylation in the promoter plays an important role in salt tolerance.
-
10.1093/pcp/pcq182, 21097475
-
Baek D, Jiang JF, Chung JS, Wang BS, Chen JP, Xin ZG, Shi HZ. Regulated AtHKT1 gene expression by a distal enhancer element and DNA methylation in the promoter plays an important role in salt tolerance. Plant Cell Physiol 2011, 52:149-161. 10.1093/pcp/pcq182, 21097475.
-
(2011)
Plant Cell Physiol
, vol.52
, pp. 149-161
-
-
Baek, D.1
Jiang, J.F.2
Chung, J.S.3
Wang, B.S.4
Chen, J.P.5
Xin, Z.G.6
Shi, H.Z.7
-
51
-
-
33846024371
-
Natural variants of AtHKT1 enhance Na(+) accumulation in two wild populations of Arabidopsis.
-
10.1371/journal.pgen.0020210, 1665649, 17140289
-
Rus A, Baxter I, Muthukumar B, Gustin J, Lahner B, Yakubova E, Salt DE. Natural variants of AtHKT1 enhance Na(+) accumulation in two wild populations of Arabidopsis. PLoS Genet 2006, 2:e210. 10.1371/journal.pgen.0020210, 1665649, 17140289.
-
(2006)
PLoS Genet
, vol.2
-
-
Rus, A.1
Baxter, I.2
Muthukumar, B.3
Gustin, J.4
Lahner, B.5
Yakubova, E.6
Salt, D.E.7
-
52
-
-
84876747482
-
Regulation of Arabidopsis leaf hydraulics involves light-dependent phosphorylation of aquaporins in veins.
-
10.1105/tpc.112.108456, 23532070
-
Pradoa K, Boursiaca Y, Tournaire-Rouxa C, Monneuseb J-M, Postairea O, Da Inesc O, Schäffner AR, Hemb S, Santonia V, Maurel C. Regulation of Arabidopsis leaf hydraulics involves light-dependent phosphorylation of aquaporins in veins. Plant Cell 2013, 25:1029-1039. 10.1105/tpc.112.108456, 23532070.
-
(2013)
Plant Cell
, vol.25
, pp. 1029-1039
-
-
Pradoa, K.1
Boursiaca, Y.2
Tournaire-Rouxa, C.3
Monneuseb, J.-M.4
Postairea, O.5
Da Inesc, O.6
Schäffner, A.R.7
Hemb, S.8
Santonia, V.9
Maurel, C.10
-
53
-
-
84864495309
-
Auxin controls Arabidopsis adventitious root initiation by regulating jasmonic acid homeostasis.
-
10.1105/tpc.112.099119, 3406919, 22730403
-
Gutierrez L, Mongelard G, Flokova K, Pacurar DI, Novak O, Staswick P, Kowalczyk M, Pacurar M, Demailly H, Geiss G, Bellini C. Auxin controls Arabidopsis adventitious root initiation by regulating jasmonic acid homeostasis. Plant Cell 2012, 24:2515-2527. 10.1105/tpc.112.099119, 3406919, 22730403.
-
(2012)
Plant Cell
, vol.24
, pp. 2515-2527
-
-
Gutierrez, L.1
Mongelard, G.2
Flokova, K.3
Pacurar, D.I.4
Novak, O.5
Staswick, P.6
Kowalczyk, M.7
Pacurar, M.8
Demailly, H.9
Geiss, G.10
Bellini, C.11
-
54
-
-
0347447343
-
A gene expression map of the Arabidopsis root.
-
10.1126/science.1090022, 14671301
-
Birnbaum K, Shasha DE, Wang JY, Jung JW, Lambert GM, Galbraith DW, Benfey PN. A gene expression map of the Arabidopsis root. Science 2003, 302:1956-1960. 10.1126/science.1090022, 14671301.
-
(2003)
Science
, vol.302
, pp. 1956-1960
-
-
Birnbaum, K.1
Shasha, D.E.2
Wang, J.Y.3
Jung, J.W.4
Lambert, G.M.5
Galbraith, D.W.6
Benfey, P.N.7
-
55
-
-
84874639770
-
Natural variation of Arabidopsis root architecture reveals complementing adaptive strategies to potassium starvation.
-
10.1104/pp.112.211144, 3585606, 23329148
-
Kellermeier F, Chardon F, Amtmann A. Natural variation of Arabidopsis root architecture reveals complementing adaptive strategies to potassium starvation. Plant Physiol 2013, 161:1421-1432. 10.1104/pp.112.211144, 3585606, 23329148.
-
(2013)
Plant Physiol
, vol.161
, pp. 1421-1432
-
-
Kellermeier, F.1
Chardon, F.2
Amtmann, A.3
-
56
-
-
48249155078
-
The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions.
-
10.1105/tpc.107.056614, 2329920, 18375658
-
Saleh A, Alvarez-Venegas R, Yilmaz M, Le O, Hou GC, Sadder M, Al-Abdallat A, Xia YN, Lu GQ, Ladunga I, Avramova Z. The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions. Plant Cell 2008, 20:568-579. 10.1105/tpc.107.056614, 2329920, 18375658.
-
(2008)
Plant Cell
, vol.20
, pp. 568-579
-
-
Saleh, A.1
Alvarez-Venegas, R.2
Yilmaz, M.3
Le, O.4
Hou, G.C.5
Sadder, M.6
Al-Abdallat, A.7
Xia, Y.N.8
Lu, G.Q.9
Ladunga, I.10
Avramova, Z.11
-
57
-
-
77954460369
-
Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression.
-
10.1007/s11103-009-9594-7, 20054610
-
Zhou JL, Wang XF, He K, Charron JBF, Elling AA, Deng XW. Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression. Plant Mol Biol 2010, 72:585-595. 10.1007/s11103-009-9594-7, 20054610.
-
(2010)
Plant Mol Biol
, vol.72
, pp. 585-595
-
-
Zhou, J.L.1
Wang, X.F.2
He, K.3
Charron, J.B.F.4
Elling, A.A.5
Deng, X.W.6
-
58
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.
-
RESEARCH0034, 126239, 12184808
-
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 2002, 3:RESEARCH0034. 126239, 12184808.
-
(2002)
Genome Biol
, vol.3
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, F.3
Poppe, B.4
Van Roy, N.5
De Paepe, A.6
Speleman, F.7
-
59
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
-
10.1186/gb-2009-10-3-r25, 2690996, 19261174
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10:R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
60
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq.
-
10.1093/bioinformatics/btp120, 2672628, 19289445
-
Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25:1105-1111. 10.1093/bioinformatics/btp120, 2672628, 19289445.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
61
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.
-
10.1038/nbt.1621, 3146043, 20436464
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 2010, 28:511-515. 10.1038/nbt.1621, 3146043, 20436464.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
|