메뉴 건너뛰기




Volumn 12, Issue 6, 2016, Pages

Small RNA-Based Antiviral Defense in the Phytopathogenic Fungus Colletotrichum higginsianum

Author keywords

[No Author keywords available]

Indexed keywords

ARGONAUTE PROTEIN; DICER;

EID: 84978790885     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1005640     Document Type: Article
Times cited : (79)

References (114)
  • 1
    • 84899741616 scopus 로고    scopus 로고
    • The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs in Arabidopsis
    • 24579988, ().:–
    • Bologna NG, Voinnet O, (2014) The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs in Arabidopsis. Annu Rev Plant Biol65: 473–503. doi: 10.1146/annurev-arplant-050213-03572824579988
    • (2014) Annu Rev Plant Biol , vol.65 , pp. 473-503
    • Bologna, N.G.1    Voinnet, O.2
  • 2
    • 84925282872 scopus 로고    scopus 로고
    • From guide to target: molecular insights into eukaryotic RNA-interference machinery
    • 25565029, ().:–
    • Ipsaro JJ, Joshua-Tor L, (2015) From guide to target: molecular insights into eukaryotic RNA-interference machinery. Nat Struct Mol Biol22: 20–28. doi: 10.1038/nsmb.293125565029
    • (2015) Nat Struct Mol Biol , vol.22 , pp. 20-28
    • Ipsaro, J.J.1    Joshua-Tor, L.2
  • 3
    • 58849112575 scopus 로고    scopus 로고
    • Biogenesis of small RNAs in animals
    • 19165215, ().:–
    • Kim VN, Han J, Siomi MC, (2009) Biogenesis of small RNAs in animals. Nat Rev Mol Cell Biol10: 126–139. doi: 10.1038/nrm263219165215
    • (2009) Nat Rev Mol Cell Biol , vol.10 , pp. 126-139
    • Kim, V.N.1    Han, J.2    Siomi, M.C.3
  • 4
    • 78650306521 scopus 로고    scopus 로고
    • Small RNA sorting: matchmaking for Argonautes
    • 21116305, ().:–
    • Czech B, Hannon GJ, (2011) Small RNA sorting: matchmaking for Argonautes. Nat Rev Genet12: 19–31. doi: 10.1038/nrg291621116305
    • (2011) Nat Rev Genet , vol.12 , pp. 19-31
    • Czech, B.1    Hannon, G.J.2
  • 5
    • 78751477191 scopus 로고    scopus 로고
    • Gene silencing by microRNAs: contributions of translational repression and mRNA decay
    • 21245828, ().:–
    • Huntzinger E, Izaurralde E, (2011) Gene silencing by microRNAs: contributions of translational repression and mRNA decay. Nat Rev Genet12: 99–110. doi: 10.1038/nrg293621245828
    • (2011) Nat Rev Genet , vol.12 , pp. 99-110
    • Huntzinger, E.1    Izaurralde, E.2
  • 6
    • 60149088848 scopus 로고    scopus 로고
    • Origins and Mechanisms of miRNAs and siRNAs
    • 19239886, ().:–
    • Carthew RW, Sontheimer EJ, (2009) Origins and Mechanisms of miRNAs and siRNAs. Cell136: 642–655. doi: 10.1016/j.cell.2009.01.03519239886
    • (2009) Cell , vol.136 , pp. 642-655
    • Carthew, R.W.1    Sontheimer, E.J.2
  • 7
    • 80052358517 scopus 로고    scopus 로고
    • RNA Interference in Fungi: Pathways, Functions, and Applications
    • 21724934, ().:–
    • Dang Y, Yang Q, Xue Z, Liu Y, (2011) RNA Interference in Fungi: Pathways, Functions, and Applications. Eukaryot Cell10: 1148–1155. doi: 10.1128/EC.05109-1121724934
    • (2011) Eukaryot Cell , vol.10 , pp. 1148-1155
    • Dang, Y.1    Yang, Q.2    Xue, Z.3    Liu, Y.4
  • 8
    • 78149470354 scopus 로고    scopus 로고
    • RNA interference pathways in filamentous fungi
    • 20680389, ().:–
    • Li L, Chang S-s, Liu Y, (2010) RNA interference pathways in filamentous fungi. Cell Mol Life Sci67: 3849–3863. doi: 10.1007/s00018-010-0471-y20680389
    • (2010) Cell Mol Life Sci , vol.67 , pp. 3849-3863
    • Li, L.1    Chang, S.-2    Liu, Y.3
  • 9
    • 0026441194 scopus 로고
    • Quelling: transient inactivation of gene expression in Neurospora crassa by transformation with homologous sequences
    • 1484489, ().:–
    • Romano N, Macino G, (1992) Quelling: transient inactivation of gene expression in Neurospora crassa by transformation with homologous sequences. Mol Microbiol6: 3343–3353. 1484489
    • (1992) Mol Microbiol , vol.6 , pp. 3343-3353
    • Romano, N.1    Macino, G.2
  • 10
    • 34247116457 scopus 로고    scopus 로고
    • Quelling: post-transcriptional gene silencing guided by small RNAs in Neurospora crassa
    • 17395524, ().:–
    • Fulci V, Macino G, (2007) Quelling: post-transcriptional gene silencing guided by small RNAs in Neurospora crassa. Curr Opin Microbiol10: 199–203. 17395524
    • (2007) Curr Opin Microbiol , vol.10 , pp. 199-203
    • Fulci, V.1    Macino, G.2
  • 11
  • 12
    • 84885576702 scopus 로고    scopus 로고
    • Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways
    • 24092744, . ().:–
    • Weiberg A, Wang M, Lin F-M, Zhao H, Zhang Z, et al. (2013) Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways. Science342: 118–123. doi: 10.1126/science.123970524092744
    • (2013) Science , vol.342 , pp. 118-123
    • Weiberg, A.1    Wang, M.2    Lin, F.-M.3    Zhao, H.4    Zhang, Z.5
  • 14
    • 34547922042 scopus 로고    scopus 로고
    • Evidence that RNA silencing functions as an antiviral defense mechanism in fungi
    • 17646660, ().:–
    • Segers GC, Zhang X, Deng F, Sun Q, Nuss DL, (2007) Evidence that RNA silencing functions as an antiviral defense mechanism in fungi. Proc Natl Acad Sci USA104: 12902–12906. 17646660
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 12902-12906
    • Segers, G.C.1    Zhang, X.2    Deng, F.3    Sun, Q.4    Nuss, D.L.5
  • 15
    • 69249240353 scopus 로고    scopus 로고
    • Viruses of Plant Pathogenic Fungi
    • 19400634, ().:–
    • Ghabrial SA, Suzuki N, (2009) Viruses of Plant Pathogenic Fungi. Annu Rev Phytopathol47: 353–384. doi: 10.1146/annurev-phyto-080508-08193219400634
    • (2009) Annu Rev Phytopathol , vol.47 , pp. 353-384
    • Ghabrial, S.A.1    Suzuki, N.2
  • 16
    • 84906307746 scopus 로고    scopus 로고
    • Fungal negative-stranded RNA virus that is related to bornaviruses and nyaviruses
    • 25092337, . ().:–
    • Liu L, Xie J, Cheng J, Fu Y, Li G, et al. (2014) Fungal negative-stranded RNA virus that is related to bornaviruses and nyaviruses. Proc Natl Acad Sci USA111: 12205–12210. doi: 10.1073/pnas.140178611125092337
    • (2014) Proc Natl Acad Sci USA , vol.111 , pp. 12205-12210
    • Liu, L.1    Xie, J.2    Cheng, J.3    Fu, Y.4    Li, G.5
  • 17
    • 77952327335 scopus 로고    scopus 로고
    • A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus
    • 20404139, . ().:–
    • Yu X, Li B, Fu Y, Jiang D, Ghabrial SA, et al. (2010) A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus. Proc Natl Acad Sci USA107: 8387–8392. doi: 10.1073/pnas.091353510720404139
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 8387-8392
    • Yu, X.1    Li, B.2    Fu, Y.3    Jiang, D.4    Ghabrial, S.A.5
  • 18
    • 22944492730 scopus 로고    scopus 로고
    • Hypovirulence: Mycoviruses at the fungal-plant interface
    • ().:–
    • Nuss DL, (2005) Hypovirulence: Mycoviruses at the fungal-plant interface. Nat Rev Micro3: 632–642.
    • (2005) Nat Rev Micro , vol.3 , pp. 632-642
    • Nuss, D.L.1
  • 19
    • 84905502065 scopus 로고    scopus 로고
    • New Insights into Mycoviruses and Exploration for the Biological Control of Crop Fungal Diseases
    • 25001452, ().:–
    • Xie J, Jiang D, (2014) New Insights into Mycoviruses and Exploration for the Biological Control of Crop Fungal Diseases. Annu Rev Phytopathol52: 45–68. doi: 10.1146/annurev-phyto-102313-05022225001452
    • (2014) Annu Rev Phytopathol , vol.52 , pp. 45-68
    • Xie, J.1    Jiang, D.2
  • 20
    • 58149242702 scopus 로고    scopus 로고
    • Mycoviruses of filamentous fungi and their relevance to plant pathology
    • 19161358, ().:–
    • Pearson MN, Beever RE, Boine B, Arthur K, (2009) Mycoviruses of filamentous fungi and their relevance to plant pathology. Mol Plant Pathol10: 115–128. doi: 10.1111/j.1364-3703.2008.00503.x19161358
    • (2009) Mol Plant Pathol , vol.10 , pp. 115-128
    • Pearson, M.N.1    Beever, R.E.2    Boine, B.3    Arthur, K.4
  • 21
    • 78651512436 scopus 로고    scopus 로고
    • The good viruses: viral mutualistic symbioses
    • ().:–
    • Roossinck MJ, (2011) The good viruses: viral mutualistic symbioses. Nat Rev Micro9: 99–108.
    • (2011) Nat Rev Micro , vol.9 , pp. 99-108
    • Roossinck, M.J.1
  • 22
    • 33846597007 scopus 로고    scopus 로고
    • A Virus in a Fungus in a Plant: Three-Way Symbiosis Required for Thermal Tolerance
    • 17255511, ().:–
    • Márquez LM, Redman RS, Rodriguez RJ, Roossinck MJ, (2007) A Virus in a Fungus in a Plant: Three-Way Symbiosis Required for Thermal Tolerance. Science315: 513–515. 17255511
    • (2007) Science , vol.315 , pp. 513-515
    • Márquez, L.M.1    Redman, R.S.2    Rodriguez, R.J.3    Roossinck, M.J.4
  • 23
    • 79960202498 scopus 로고    scopus 로고
    • 21762820, (). In::. pp.–
    • Nuss DL, Karl Maramorosch AJS, Frederick AM, (2011) Mycoviruses, RNA Silencing, and Viral RNA Recombination. In: Adv Virus Res: Academic Press. pp. 25–48. doi: 10.1016/B978-0-12-385987-7.00002-621762820
    • (2011) Adv Virus Res , pp. 25-48
    • Nuss, D.L.1    Karl Maramorosch, A.J.S.2    Frederick, A.M.3
  • 24
    • 4744368511 scopus 로고    scopus 로고
    • 15530566, ().:. pp.–
    • Hillman BI, Suzuki N, (2004) Viruses of the Chestnut Blight Fungus, Cryphonectria parasitica. Adv Virus Res: Academic Press. pp. 423–472. 15530566
    • (2004) Adv Virus Res , pp. 423-472
    • Hillman, B.I.1    Suzuki, N.2
  • 25
    • 70449584558 scopus 로고    scopus 로고
    • A single Argonaute gene is required for induction of RNA silencing antiviral defense and promotes viral RNA recombination
    • 19822766, ().:–
    • Sun Q, Choi GH, Nuss DL, (2009) A single Argonaute gene is required for induction of RNA silencing antiviral defense and promotes viral RNA recombination. Proc Natl Acad Sci USA106: 17927–17932. doi: 10.1073/pnas.090755210619822766
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 17927-17932
    • Sun, Q.1    Choi, G.H.2    Nuss, D.L.3
  • 26
    • 84907495072 scopus 로고    scopus 로고
    • Characterizing the Roles of Cryphonectria parasitica RNA-Dependent RNA Polymerase-Like Genes in Antiviral Defense, Viral Recombination and Transposon Transcript Accumulation
    • 25268858
    • Zhang D-X, Spiering MJ, Nuss DL, (2014) Characterizing the Roles of Cryphonectria parasitica RNA-Dependent RNA Polymerase-Like Genes in Antiviral Defense, Viral Recombination and Transposon Transcript Accumulation. PLoS ONE9: e108653. doi: 10.1371/journal.pone.010865325268858
    • (2014) PLoS ONE , vol.9 , pp. e108653
    • Zhang, D.-X.1    Spiering, M.J.2    Nuss, D.L.3
  • 27
    • 84873870422 scopus 로고    scopus 로고
    • Effects of Defective Interfering RNA on Symptom Induction by, and Replication of, a Novel Partitivirus from a Phytopathogenic Fungus, Rosellinia necatrix
    • 23236074, ().:–
    • Chiba S, Lin Y-H, Kondo H, Kanematsu S, Suzuki N, (2013) Effects of Defective Interfering RNA on Symptom Induction by, and Replication of, a Novel Partitivirus from a Phytopathogenic Fungus, Rosellinia necatrix. J Virol87: 2330–2341. doi: 10.1128/JVI.02835-1223236074
    • (2013) J Virol , vol.87 , pp. 2330-2341
    • Chiba, S.1    Lin, Y.-H.2    Kondo, H.3    Kanematsu, S.4    Suzuki, N.5
  • 28
    • 84878603427 scopus 로고    scopus 로고
    • A Novel Victorivirus from a Phytopathogenic Fungus, Rosellinia necatrix, Is Infectious as Particles and Targeted by RNA Silencing
    • 23552428, ().:–
    • Chiba S, Lin Y-H, Kondo H, Kanematsu S, Suzuki N, (2013) A Novel Victorivirus from a Phytopathogenic Fungus, Rosellinia necatrix, Is Infectious as Particles and Targeted by RNA Silencing. J Virol87: 6727–6738. doi: 10.1128/JVI.00557-1323552428
    • (2013) J Virol , vol.87 , pp. 6727-6738
    • Chiba, S.1    Lin, Y.-H.2    Kondo, H.3    Kanematsu, S.4    Suzuki, N.5
  • 29
    • 84892448459 scopus 로고    scopus 로고
    • Biological properties and expression strategy of rosellinia necatrix megabirnavirus 1 analysed in an experimental host, Cryphonectria parasitica
    • 24259190, ().:–
    • Salaipeth L, Chiba S, Eusebio-Cope A, Kanematsu S, Suzuki N, (2014) Biological properties and expression strategy of rosellinia necatrix megabirnavirus 1 analysed in an experimental host, Cryphonectria parasitica. J Gen Virol95: 740–750. doi: 10.1099/vir.0.058164-024259190
    • (2014) J Gen Virol , vol.95 , pp. 740-750
    • Salaipeth, L.1    Chiba, S.2    Eusebio-Cope, A.3    Kanematsu, S.4    Suzuki, N.5
  • 30
    • 0036024579 scopus 로고    scopus 로고
    • The viral killer system in yeast: from molecular biology to application
    • 12165427, ().:–
    • Schmitt MJ, Breinig F, (2002) The viral killer system in yeast: from molecular biology to application. FEMS Microbiol Rev26: 257–276. 12165427
    • (2002) FEMS Microbiol Rev , vol.26 , pp. 257-276
    • Schmitt, M.J.1    Breinig, F.2
  • 31
    • 80052956817 scopus 로고    scopus 로고
    • Compatibility with Killer Explains the Rise of RNAi-Deficient Fungi
    • 21921191
    • Drinnenberg IA, Fink GR, Bartel DP, (2011) Compatibility with Killer Explains the Rise of RNAi-Deficient Fungi. Science333: 1592. doi: 10.1126/science.120957521921191
    • (2011) Science , vol.333 , pp. 1592
    • Drinnenberg, I.A.1    Fink, G.R.2    Bartel, D.P.3
  • 32
    • 84875082069 scopus 로고    scopus 로고
    • Loss and Retention of RNA Interference in Fungi and Parasites
    • 23358725
    • Nicolás FE, Torres-Martínez S, Ruiz-Vázquez RM, (2013) Loss and Retention of RNA Interference in Fungi and Parasites. PLoS Pathog9: e1003089. doi: 10.1371/journal.ppat.100308923358725
    • (2013) PLoS Pathog , vol.9 , pp. e1003089
    • Nicolás, F.E.1    Torres-Martínez, S.2    Ruiz-Vázquez, R.M.3
  • 33
    • 84871127313 scopus 로고    scopus 로고
    • Colletotrichum–current status and future directions
    • 23136460, ().:–
    • Cannon PF, Damm U, Johnston PR, Weir BS, (2012) Colletotrichum–current status and future directions. Studies in Mycology73: 181–213. doi: 10.3114/sim001423136460
    • (2012) Studies in Mycology , vol.73 , pp. 181-213
    • Cannon, P.F.1    Damm, U.2    Johnston, P.R.3    Weir, B.S.4
  • 34
    • 1642423842 scopus 로고    scopus 로고
    • A Novel Arabidopsis-Colletotrichum Pathosystem for the Molecular Dissection of Plant-Fungal Interactions
    • 15000394, . ().:–
    • O'Connell R, Herbert C, Sreenivasaprasad S, Khatib M, Esquerré-Tugayé M-T, et al. (2004) A Novel Arabidopsis-Colletotrichum Pathosystem for the Molecular Dissection of Plant-Fungal Interactions. Mol Plant-Microbe Interact17: 272–282. 15000394
    • (2004) Mol Plant-Microbe Interact , vol.17 , pp. 272-282
    • O'Connell, R.1    Herbert, C.2    Sreenivasaprasad, S.3    Khatib, M.4    Esquerré-Tugayé, M.-T.5
  • 35
    • 84865693932 scopus 로고    scopus 로고
    • Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses
    • 22885923, . ().:–
    • O'Connell RJ, Thon MR, Hacquard S, Amyotte SG, Kleemann J, et al. (2012) Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses. Nat Genet44: 1060–1065. doi: 10.1038/ng.237222885923
    • (2012) Nat Genet , vol.44 , pp. 1060-1065
    • O'Connell, R.J.1    Thon, M.R.2    Hacquard, S.3    Amyotte, S.G.4    Kleemann, J.5
  • 36
    • 2442679207 scopus 로고    scopus 로고
    • Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain
    • 15152257, ().:–
    • Ma J-B, Ye K, Patel DJ, (2004) Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain. Nature429: 318–322. 15152257
    • (2004) Nature , vol.429 , pp. 318-322
    • Ma, J.-B.1    Ye, K.2    Patel, D.J.3
  • 37
    • 30844438338 scopus 로고    scopus 로고
    • Structural Basis for Double-Stranded RNA Processing by Dicer
    • 16410517, . ().:–
    • MacRae IJ, Zhou K, Li F, Repic A, Brooks AN, et al. (2006) Structural Basis for Double-Stranded RNA Processing by Dicer. Science311: 195–198. 16410517
    • (2006) Science , vol.311 , pp. 195-198
    • MacRae, I.J.1    Zhou, K.2    Li, F.3    Repic, A.4    Brooks, A.N.5
  • 39
    • 77954063506 scopus 로고    scopus 로고
    • A Complex Small RNA Repertoire Is Generated by a Plant/Fungal-Like Machinery and Effected by a Metazoan-Like Argonaute in the Single-Cell Human Parasite Toxoplasma gondii
    • Braun L, Cannella D, Ortet P, Barakat M, Sautel CF, et al. (2010) A Complex Small RNA Repertoire Is Generated by a Plant/Fungal-Like Machinery and Effected by a Metazoan-Like Argonaute in the Single-Cell Human Parasite Toxoplasma gondii. PLoS Path6: e1000920.
    • (2010) PLoS Path , vol.6 , pp. e1000920
    • Braun, L.1    Cannella, D.2    Ortet, P.3    Barakat, M.4    Sautel, C.F.5
  • 40
    • 52049104255 scopus 로고    scopus 로고
    • Diversification of the Core RNA Interference Machinery in Chlamydomonas reinhardtii and the Role of DCL1 in Transposon Silencing
    • 18493041, . ().:–
    • Casas-Mollano JA, Rohr J, Kim E-J, Balassa E, van Dijk K, et al. (2008) Diversification of the Core RNA Interference Machinery in Chlamydomonas reinhardtii and the Role of DCL1 in Transposon Silencing. Genetics179: 69–81. doi: 10.1534/genetics.107.08654618493041
    • (2008) Genetics , vol.179 , pp. 69-81
    • Casas-Mollano, J.A.1    Rohr, J.2    Kim, E.-J.3    Balassa, E.4    van Dijk, K.5
  • 41
    • 33845774243 scopus 로고    scopus 로고
    • Slicer and the Argonautes
    • 17173028, ().:–
    • Tolia NH, Joshua-Tor L, (2007) Slicer and the Argonautes. Nat Chem Biol3: 36–43. 17173028
    • (2007) Nat Chem Biol , vol.3 , pp. 36-43
    • Tolia, N.H.1    Joshua-Tor, L.2
  • 42
    • 2442597534 scopus 로고    scopus 로고
    • TbAGO1, an Argonaute protein required for RNA interference, is involved in mitosis and chromosome segregation in Trypanosoma brucei
    • 14670085
    • Durand-Dubief M, Bastin P, (2003) TbAGO1, an Argonaute protein required for RNA interference, is involved in mitosis and chromosome segregation in Trypanosoma brucei. BMC Biol1: 2. 14670085
    • (2003) BMC Biol , vol.1 , pp. 2
    • Durand-Dubief, M.1    Bastin, P.2
  • 44
    • 3042569778 scopus 로고    scopus 로고
    • DNA Methylation Is Independent of RNA Interference in Neurospora
    • 15218142
    • Freitag M, Lee DW, Kothe GO, Pratt RJ, Aramayo R, et al. (2004) DNA Methylation Is Independent of RNA Interference in Neurospora. Science304: 1939. 15218142
    • (2004) Science , vol.304 , pp. 1939
    • Freitag, M.1    Lee, D.W.2    Kothe, G.O.3    Pratt, R.J.4    Aramayo, R.5
  • 45
    • 34347341721 scopus 로고    scopus 로고
    • A Double-Stranded-RNA Response Program Important for RNA Interference Efficiency
    • 17371837, . ().:–
    • Choudhary S, Lee H-C, Maiti M, He Q, Cheng P, et al. (2007) A Double-Stranded-RNA Response Program Important for RNA Interference Efficiency. Mol Cell Biol27: 3995–4005. 17371837
    • (2007) Mol Cell Biol , vol.27 , pp. 3995-4005
    • Choudhary, S.1    Lee, H.-C.2    Maiti, M.3    He, Q.4    Cheng, P.5
  • 46
    • 34247624273 scopus 로고    scopus 로고
    • Mutants defective in a Mucor circinelloides dicer-like gene are not compromised in siRNA silencing but display developmental defects
    • 17074518, ().:–
    • Nicolas FE, de Haro JP, Torres-Martinez S, Ruiz-Vazquez RM, (2007) Mutants defective in a Mucor circinelloides dicer-like gene are not compromised in siRNA silencing but display developmental defects. Fungal Genet Biol44: 504–516. 17074518
    • (2007) Fungal Genet Biol , vol.44 , pp. 504-516
    • Nicolas, F.E.1    de Haro, J.P.2    Torres-Martinez, S.3    Ruiz-Vazquez, R.M.4
  • 47
    • 7244226378 scopus 로고    scopus 로고
    • One of the Two Dicer-like Proteins in the Filamentous Fungi Magnaporthe oryzae Genome Is Responsible for Hairpin RNA-triggered RNA Silencing and Related Small Interfering RNA Accumulation
    • 15304480, ().:–
    • Kadotani N, Nakayashiki H, Tosa Y, Mayama S, (2004) One of the Two Dicer-like Proteins in the Filamentous Fungi Magnaporthe oryzae Genome Is Responsible for Hairpin RNA-triggered RNA Silencing and Related Small Interfering RNA Accumulation. J Biol Chem279: 44467–44474. 15304480
    • (2004) J Biol Chem , vol.279 , pp. 44467-44474
    • Kadotani, N.1    Nakayashiki, H.2    Tosa, Y.3    Mayama, S.4
  • 48
    • 84856005348 scopus 로고    scopus 로고
    • Candida albicans Dicer (CaDcr1) is required for efficient ribosomal and spliceosomal RNA maturation
    • 22173636, . ().:–
    • Bernstein DA, Vyas VK, Weinberg DE, Drinnenberg IA, Bartel DP, et al. (2012) Candida albicans Dicer (CaDcr1) is required for efficient ribosomal and spliceosomal RNA maturation. Proc Natl Acad Sci USA109: 523–528. doi: 10.1073/pnas.111885910922173636
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 523-528
    • Bernstein, D.A.1    Vyas, V.K.2    Weinberg, D.E.3    Drinnenberg, I.A.4    Bartel, D.P.5
  • 49
    • 78349309117 scopus 로고    scopus 로고
    • Characterizing the role of RNA silencing components in Cryptococcus neoformans
    • 21067947, . ().:–
    • Janbon G, Maeng S, Yang D-H, Ko Y-J, Jung K-W, et al. (2010) Characterizing the role of RNA silencing components in Cryptococcus neoformans. Fungal Genet Biol47: 1070–1080. doi: 10.1016/j.fgb.2010.10.00521067947
    • (2010) Fungal Genet Biol , vol.47 , pp. 1070-1080
    • Janbon, G.1    Maeng, S.2    Yang, D.-H.3    Ko, Y.-J.4    Jung, K.-W.5
  • 50
    • 70349696860 scopus 로고    scopus 로고
    • A Single dicer Gene Is Required for Efficient Gene Silencing Associated with Two Classes of Small Antisense RNAs in Mucor circinelloides
    • 19666782, . ().:–
    • de Haro JP, Calo S, Cervantes M, Nicolás FE, Torres-Martínez S, et al. (2009) A Single dicer Gene Is Required for Efficient Gene Silencing Associated with Two Classes of Small Antisense RNAs in Mucor circinelloides. Eukaryot Cell8: 1486–1497. doi: 10.1128/EC.00191-0919666782
    • (2009) Eukaryot Cell , vol.8 , pp. 1486-1497
    • de Haro, J.P.1    Calo, S.2    Cervantes, M.3    Nicolás, F.E.4    Torres-Martínez, S.5
  • 51
    • 84880711484 scopus 로고    scopus 로고
    • A Single Argonaute Gene Participates in Exogenous and Endogenous RNAi and Controls Cellular Functions in the Basal Fungus Mucor circinelloides
    • 23935973
    • Cervantes M, Vila A, Nicolás FE, Moxon S, de Haro JP, et al. (2013) A Single Argonaute Gene Participates in Exogenous and Endogenous RNAi and Controls Cellular Functions in the Basal Fungus Mucor circinelloides. PLoS ONE8: e69283. doi: 10.1371/journal.pone.006928323935973
    • (2013) PLoS ONE , vol.8 , pp. e69283
    • Cervantes, M.1    Vila, A.2    Nicolás, F.E.3    Moxon, S.4    de Haro, J.P.5
  • 52
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • 22388286, ().:–
    • Langmead B, Salzberg S, (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods9: 357–359. doi: 10.1038/nmeth.192322388286
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.2
  • 53
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • 19261174
    • Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol10: R25. doi: 10.1186/gb-2009-10-3-r2519261174
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 55
    • 39749113080 scopus 로고    scopus 로고
    • Clonal Integration of a Polyomavirus in Human Merkel Cell Carcinoma
    • 18202256, ().:–
    • Feng H, Shuda M, Chang Y, Moore PS, (2008) Clonal Integration of a Polyomavirus in Human Merkel Cell Carcinoma. Science319: 1096–1100. doi: 10.1126/science.115258618202256
    • (2008) Science , vol.319 , pp. 1096-1100
    • Feng, H.1    Shuda, M.2    Chang, Y.3    Moore, P.S.4
  • 56
    • 84918812787 scopus 로고    scopus 로고
    • Large scale comparison of non-human sequences in human sequencing data
    • 25173571
    • Tae H, Karunasena E, Bavarva JH, McIver LJ, Garner HR, (2014) Large scale comparison of non-human sequences in human sequencing data. Genomics104: 453. doi: 10.1016/j.ygeno.2014.08.00925173571
    • (2014) Genomics , vol.104 , pp. 453
    • Tae, H.1    Karunasena, E.2    Bavarva, J.H.3    McIver, L.J.4    Garner, H.R.5
  • 57
    • 84882860961 scopus 로고    scopus 로고
    • Viral pathogen discovery
    • 23725672, ().:–
    • Chiu CY, (2013) Viral pathogen discovery. Curr Opin Microbiol16: 468–478. doi: 10.1016/j.mib.2013.05.00123725672
    • (2013) Curr Opin Microbiol , vol.16 , pp. 468-478
    • Chiu, C.Y.1
  • 58
    • 84880266648 scopus 로고    scopus 로고
    • De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
    • 23845962, . ().:–
    • Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, et al. (2013) De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protocols8: 1494–1512. doi: 10.1038/nprot.2013.08423845962
    • (2013) Nat Protocols , vol.8 , pp. 1494-1512
    • Haas, B.J.1    Papanicolaou, A.2    Yassour, M.3    Grabherr, M.4    Blood, P.D.5
  • 59
    • 7444262028 scopus 로고    scopus 로고
    • Complete genome sequence of Mycoreovirus-1/Cp9B21, a member of a novel genus within the family Reoviridae, isolated from the chestnut blight fungus Cryphonectria parasitica
    • 15483262, ().:–
    • Suzuki N, Supyani S, Maruyama K, Hillman BI, (2004) Complete genome sequence of Mycoreovirus-1/Cp9B21, a member of a novel genus within the family Reoviridae, isolated from the chestnut blight fungus Cryphonectria parasitica. J Gen Virol85: 3437–3448. 15483262
    • (2004) J Gen Virol , vol.85 , pp. 3437-3448
    • Suzuki, N.1    Supyani, S.2    Maruyama, K.3    Hillman, B.I.4
  • 60
    • 84906088916 scopus 로고    scopus 로고
    • Detection and characterization of a novel Gammapartitivirus in the phytopathogenic fungus Colletotrichum acutatum strain HNZJ001
    • 25008759, . ().:–
    • Zhong J, Chen D, Lei XH, Zhu HJ, Zhu JZ, et al. (2014) Detection and characterization of a novel Gammapartitivirus in the phytopathogenic fungus Colletotrichum acutatum strain HNZJ001. Virus Res190: 104–109. doi: 10.1016/j.virusres.2014.05.02825008759
    • (2014) Virus Res , vol.190 , pp. 104-109
    • Zhong, J.1    Chen, D.2    Lei, X.H.3    Zhu, H.J.4    Zhu, J.Z.5
  • 61
    • 84862825919 scopus 로고    scopus 로고
    • Characterization of three Colletotrichum acutatum isolates from Capsicum spp
    • . ().:–
    • Liao C-Y, Chen M-Y, Chen Y-K, Wang T-C, Sheu Z-M, et al. (2012) Characterization of three Colletotrichum acutatum isolates from Capsicum spp. Eur J Plant Pathol133: 599–608.
    • (2012) Eur J Plant Pathol , vol.133 , pp. 599-608
    • Liao, C.-Y.1    Chen, M.-Y.2    Chen, Y.-K.3    Wang, T.-C.4    Sheu, Z.-M.5
  • 62
    • 84861755924 scopus 로고    scopus 로고
    • Detection of isometric, dsRNA-containing viral particles in Colletotrichum gloeosporioides isolated from cashew tree
    • . ().:–
    • Figueirêdo LCd, Figueirêdo GSd, Giancoli ÁCH, Tanaka FAO, Silva LAOd, et al. (2012) Detection of isometric, dsRNA-containing viral particles in Colletotrichum gloeosporioides isolated from cashew tree. Trop Plant Pathol37: 142–145.
    • (2012) Trop Plant Pathol , vol.37 , pp. 142-145
    • Figueirêdo, L.C.1    Figueirêdo, G.S.2    Giancoli, ÁC.H.3    Tanaka, F.A.O.4    Silva, L.A.O.5
  • 63
    • 1542328804 scopus 로고    scopus 로고
    • The dsRNA viruses
    • 15010213, ().:–
    • Mertens P, (2004) The dsRNA viruses. Virus Res101: 3–13. 15010213
    • (2004) Virus Res , vol.101 , pp. 3-13
    • Mertens, P.1
  • 64
    • 0036785914 scopus 로고    scopus 로고
    • L-A virus at 3.4 A resolution reveals particle architecture and mRNA decapping mechanism
    • ().:–
    • Naitow H, Tang J, Canady M, Wickner RB, Johnson JE, (2002) L-A virus at 3.4 A resolution reveals particle architecture and mRNA decapping mechanism. Nat Struct Mol Biol9: 725–728.
    • (2002) Nat Struct Mol Biol , vol.9 , pp. 725-728
    • Naitow, H.1    Tang, J.2    Canady, M.3    Wickner, R.B.4    Johnson, J.E.5
  • 65
    • 77954065271 scopus 로고    scopus 로고
    • I-TASSER: a unified platform for automated protein structure and function prediction
    • 20360767, ().:–
    • Roy A, Kucukural A, Zhang Y, (2010) I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protocols5: 725–738. doi: 10.1038/nprot.2010.520360767
    • (2010) Nat Protocols , vol.5 , pp. 725-738
    • Roy, A.1    Kucukural, A.2    Zhang, Y.3
  • 66
    • 39449115394 scopus 로고    scopus 로고
    • I-TASSER server for protein 3D structure prediction
    • 18215316
    • Zhang Y, (2008) I-TASSER server for protein 3D structure prediction. BMC Bioinformatics9: 40. doi: 10.1186/1471-2105-9-4018215316
    • (2008) BMC Bioinformatics , vol.9 , pp. 40
    • Zhang, Y.1
  • 67
    • 77951961719 scopus 로고    scopus 로고
    • How significant is a protein structure similarity with TM-score = 0.5?
    • 20164152, ():–
    • Xu J, Zhang Y, (2010) How significant is a protein structure similarity with TM-score = 0.5?Bioinformatics26: 889–895. doi: 10.1093/bioinformatics/btq06620164152
    • (2010) Bioinformatics , vol.26 , pp. 889-895
    • Xu, J.1    Zhang, Y.2
  • 68
    • 10344232638 scopus 로고    scopus 로고
    • Scoring function for automated assessment of protein structure template quality
    • ().:–
    • Zhang Y, Skolnick J, (2004) Scoring function for automated assessment of protein structure template quality. Proteins: Struct Funct Bioinf57: 702–710.
    • (2004) Proteins: Struct Funct Bioinf , vol.57 , pp. 702-710
    • Zhang, Y.1    Skolnick, J.2
  • 69
    • 84876012885 scopus 로고    scopus 로고
    • Three-dimensional Structure of Victorivirus HvV190S Suggests Coat Proteins in Most Totiviruses Share a Conserved Core
    • 23516364
    • Dunn SE, Li H, Cardone G, Nibert ML, Ghabrial SA, et al. (2013) Three-dimensional Structure of Victorivirus HvV190S Suggests Coat Proteins in Most Totiviruses Share a Conserved Core. PLoS Pathog9: e1003225. doi: 10.1371/journal.ppat.100322523516364
    • (2013) PLoS Pathog , vol.9 , pp. e1003225
    • Dunn, S.E.1    Li, H.2    Cardone, G.3    Nibert, M.L.4    Ghabrial, S.A.5
  • 70
    • 3242731195 scopus 로고    scopus 로고
    • A Model for Random Sampling and Estimation of Relative Protein Abundance in Shotgun Proteomics
    • 15253663, ().:–
    • Liu H, Sadygov RG, Yates JR, (2004) A Model for Random Sampling and Estimation of Relative Protein Abundance in Shotgun Proteomics. Anal Chem76: 4193–4201. 15253663
    • (2004) Anal Chem , vol.76 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates, J.R.3
  • 71
    • 0027973510 scopus 로고
    • Fungal Virus Capsids, Cytoplasmic Compartments for the Replication of Double-stranded RNA, Formed as Icosahedral Shells of Asymmetric Gag Dimers
    • 7966336, . ().:–
    • Cheng RH, Caston JR, Wang G-j, Gu F, Smith TJ, et al. (1994) Fungal Virus Capsids, Cytoplasmic Compartments for the Replication of Double-stranded RNA, Formed as Icosahedral Shells of Asymmetric Gag Dimers. J Mol Biol244: 255–258. 7966336
    • (1994) J Mol Biol , vol.244 , pp. 255-258
    • Cheng, R.H.1    Caston, J.R.2    Wang, G.-3    Gu, F.4    Smith, T.J.5
  • 72
    • 77955222849 scopus 로고    scopus 로고
    • Backbone Trace of Partitivirus Capsid Protein from Electron Cryomicroscopy and Homology Modeling
    • 20643089, . ().:–
    • Tang J, Pan J, Havens WM, Ochoa WF, Guu TSY, et al. (2010) Backbone Trace of Partitivirus Capsid Protein from Electron Cryomicroscopy and Homology Modeling. Biophys J99: 685–694. doi: 10.1016/j.bpj.2010.04.05820643089
    • (2010) Biophys J , vol.99 , pp. 685-694
    • Tang, J.1    Pan, J.2    Havens, W.M.3    Ochoa, W.F.4    Guu, T.S.Y.5
  • 73
    • 63449086336 scopus 로고    scopus 로고
    • Atomic structure reveals the unique capsid organization of a dsRNA virus
    • 19246376, . ().:–
    • Pan J, Dong L, Lin L, Ochoa WF, Sinkovits RS, et al. (2009) Atomic structure reveals the unique capsid organization of a dsRNA virus. Proc Natl Acad Sci USA106: 4225–4230. doi: 10.1073/pnas.081207110619246376
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 4225-4230
    • Pan, J.1    Dong, L.2    Lin, L.3    Ochoa, W.F.4    Sinkovits, R.S.5
  • 74
    • 60749128006 scopus 로고    scopus 로고
    • Southern tomato virus: The link between the families Totiviridae and Partitiviridae
    • 19118586, ().:–
    • Sabanadzovic S, Valverde RA, Brown JK, Martin RR, Tzanetakis IE, (2009) Southern tomato virus: The link between the families Totiviridae and Partitiviridae. Virus Res140: 130–137. doi: 10.1016/j.virusres.2008.11.01819118586
    • (2009) Virus Res , vol.140 , pp. 130-137
    • Sabanadzovic, S.1    Valverde, R.A.2    Brown, J.K.3    Martin, R.R.4    Tzanetakis, I.E.5
  • 75
    • 78650530718 scopus 로고    scopus 로고
    • Blueberry latent virus: An amalgam of the Partitiviridae and Totiviridae
    • 20888379, ().:–
    • Martin RR, Zhou J, Tzanetakis IE, (2011) Blueberry latent virus: An amalgam of the Partitiviridae and Totiviridae. Virus Res155: 175–180. doi: 10.1016/j.virusres.2010.09.02020888379
    • (2011) Virus Res , vol.155 , pp. 175-180
    • Martin, R.R.1    Zhou, J.2    Tzanetakis, I.E.3
  • 76
    • 78149394015 scopus 로고    scopus 로고
    • A novel monopartite dsRNA virus from rhododendron
    • 20721591, ().:–
    • Sabanadzovic S, Abou Ghanem-Sabanadzovic N, Valverde RA, (2010) A novel monopartite dsRNA virus from rhododendron. Arch Virol155: 1859–1863. doi: 10.1007/s00705-010-0770-520721591
    • (2010) Arch Virol , vol.155 , pp. 1859-1863
    • Sabanadzovic, S.1    Abou Ghanem-Sabanadzovic, N.2    Valverde, R.A.3
  • 77
    • 84874972038 scopus 로고    scopus 로고
    • 23498905, (). In::. pp.–
    • Dawe AL, Nuss DL, Said AG, (2013) Hypovirus Molecular Biology: From Koch's Postulates to Host Self-Recognition Genes that Restrict Virus Transmission. In: Adv Virus Res: Academic Press. pp. 109–147. doi: 10.1016/B978-0-12-394315-6.00005-223498905
    • (2013) Adv Virus Res , pp. 109-147
    • Dawe, A.L.1    Nuss, D.L.2    Said, A.G.3
  • 78
    • 0027770855 scopus 로고
    • A closely related group of RNA-dependent RNA polymerases from double-stranded RNA viruses
    • 8284213, ().:–
    • Bruenn JA, (1993) A closely related group of RNA-dependent RNA polymerases from double-stranded RNA viruses. Nucleic Acids Res21: 5667–5669. 8284213
    • (1993) Nucleic Acids Res , vol.21 , pp. 5667-5669
    • Bruenn, J.A.1
  • 79
    • 84925533191 scopus 로고    scopus 로고
    • The complete genome sequence of a novel mycovirus from Alternaria longipes strain HN28
    • ().:–
    • Lin Y, Zhang H, Zhao C, Liu S, Guo L, (2014) The complete genome sequence of a novel mycovirus from Alternaria longipes strain HN28. Arch Virol: 1–4.
    • (2014) Arch Virol , pp. 1-4
    • Lin, Y.1    Zhang, H.2    Zhao, C.3    Liu, S.4    Guo, L.5
  • 80
    • 84923300554 scopus 로고    scopus 로고
    • Identification and sequence determination of a novel double-stranded RNA mycovirus from the entomopathogenic fungus Beauveria bassiana
    • 25577168, ().:–
    • Kotta-Loizou I, Sipkova J, Coutts RA, (2015) Identification and sequence determination of a novel double-stranded RNA mycovirus from the entomopathogenic fungus Beauveria bassiana. Arch Virol160: 873–875. doi: 10.1007/s00705-014-2332-825577168
    • (2015) Arch Virol , vol.160 , pp. 873-875
    • Kotta-Loizou, I.1    Sipkova, J.2    Coutts, R.A.3
  • 81
    • 84937541230 scopus 로고    scopus 로고
    • Molecular characterization of a novel amalgavirus from the entomopathogenic fungus Beauveria bassiana
    • 25854690, ().:–
    • Koloniuk I, Hrabáková L, Petrzik K, (2015) Molecular characterization of a novel amalgavirus from the entomopathogenic fungus Beauveria bassiana. Arch Virol160: 1585–1588. doi: 10.1007/s00705-015-2416-025854690
    • (2015) Arch Virol , vol.160 , pp. 1585-1588
    • Koloniuk, I.1    Hrabáková, L.2    Petrzik, K.3
  • 82
    • 84938417702 scopus 로고    scopus 로고
    • A novel mycovirus identified from the rice false smut fungus Ustilaginoidea virens
    • 26041139, ().:–
    • Zhu H, Chen D, Zhong J, Zhang S, Gao B, (2015) A novel mycovirus identified from the rice false smut fungus Ustilaginoidea virens. Virus Genes51: 159–162. doi: 10.1007/s11262-015-1212-y26041139
    • (2015) Virus Genes , vol.51 , pp. 159-162
    • Zhu, H.1    Chen, D.2    Zhong, J.3    Zhang, S.4    Gao, B.5
  • 83
    • 84949058006 scopus 로고    scopus 로고
    • Multiple approaches for the detection and characterization of viral and plasmid symbionts from a collection of marine fungi
    • Nerva L, Ciuffo M, Vallino M, Margaria P, Varese GC, et al. Multiple approaches for the detection and characterization of viral and plasmid symbionts from a collection of marine fungi. Virus Resdoi: 10.1016/j.virusres.2015.10.028
    • Virus Res
    • Nerva, L.1    Ciuffo, M.2    Vallino, M.3    Margaria, P.4    Varese, G.C.5
  • 84
    • 84862306931 scopus 로고    scopus 로고
    • Evolutionary genomics of mycovirus-related dsRNA viruses reveals cross-family horizontal gene transfer and evolution of diverse viral lineages
    • 22716092
    • Liu H, Fu Y, Xie J, Cheng J, Ghabrial S, et al. (2012) Evolutionary genomics of mycovirus-related dsRNA viruses reveals cross-family horizontal gene transfer and evolution of diverse viral lineages. BMC Evol Biol12: 91. doi: 10.1186/1471-2148-12-9122716092
    • (2012) BMC Evol Biol , vol.12 , pp. 91
    • Liu, H.1    Fu, Y.2    Xie, J.3    Cheng, J.4    Ghabrial, S.5
  • 85
    • 77949570473 scopus 로고    scopus 로고
    • Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard
    • 20172578, . ().:–
    • Coetzee B, Freeborough M-J, Maree HJ, Celton J-M, Rees DJG, et al. (2010) Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard. Virology400: 157–163. doi: 10.1016/j.virol.2010.01.02320172578
    • (2010) Virology , vol.400 , pp. 157-163
    • Coetzee, B.1    Freeborough, M.-J.2    Maree, H.J.3    Celton, J.-M.4    Rees, D.J.G.5
  • 86
    • 69849103740 scopus 로고    scopus 로고
    • Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes
    • 19665162, . ().:–
    • Donaire L, Wang Y, Gonzalez-Ibeas D, Mayer KF, Aranda MA, et al. (2009) Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes. Virology392: 203–214. doi: 10.1016/j.virol.2009.07.00519665162
    • (2009) Virology , vol.392 , pp. 203-214
    • Donaire, L.1    Wang, Y.2    Gonzalez-Ibeas, D.3    Mayer, K.F.4    Aranda, M.A.5
  • 87
    • 77950367420 scopus 로고    scopus 로고
    • Arabidopsis RNA-Dependent RNA Polymerases and Dicer-Like Proteins in Antiviral Defense and Small Interfering RNA Biogenesis during Turnip Mosaic Virus Infection
    • 20190077, . ().:–
    • Garcia-Ruiz H, Takeda A, Chapman EJ, Sullivan CM, Fahlgren N, et al. (2010) Arabidopsis RNA-Dependent RNA Polymerases and Dicer-Like Proteins in Antiviral Defense and Small Interfering RNA Biogenesis during Turnip Mosaic Virus Infection. Plant Cell22: 481–496. doi: 10.1105/tpc.109.07305620190077
    • (2010) Plant Cell , vol.22 , pp. 481-496
    • Garcia-Ruiz, H.1    Takeda, A.2    Chapman, E.J.3    Sullivan, C.M.4    Fahlgren, N.5
  • 88
    • 34547587566 scopus 로고    scopus 로고
    • Antiviral Immunity Directed by Small RNAs
    • 17693253, ().:–
    • Ding S-W, Voinnet O, (2007) Antiviral Immunity Directed by Small RNAs. Cell130: 413–426. 17693253
    • (2007) Cell , vol.130 , pp. 413-426
    • Ding, S.-W.1    Voinnet, O.2
  • 89
    • 79957761869 scopus 로고    scopus 로고
    • The 21-Nucleotide, but Not 22-Nucleotide, Viral Secondary Small Interfering RNAs Direct Potent Antiviral Defense by Two Cooperative Argonautes in Arabidopsis thaliana
    • 21467580, . ().:–
    • Wang X-B, Jovel J, Udomporn P, Wang Y, Wu Q, et al. (2011) The 21-Nucleotide, but Not 22-Nucleotide, Viral Secondary Small Interfering RNAs Direct Potent Antiviral Defense by Two Cooperative Argonautes in Arabidopsis thaliana. Plant Cell23: 1625–1638. doi: 10.1105/tpc.110.08230521467580
    • (2011) Plant Cell , vol.23 , pp. 1625-1638
    • Wang, X.-B.1    Jovel, J.2    Udomporn, P.3    Wang, Y.4    Wu, Q.5
  • 90
    • 40149086828 scopus 로고    scopus 로고
    • Characterization of Hypovirus-Derived Small RNAs Generated in the Chestnut Blight Fungus by an Inducible DCL-2-Dependent Pathway
    • 18199652, ().:–
    • Zhang X, Segers GC, Sun Q, Deng F, Nuss DL, (2008) Characterization of Hypovirus-Derived Small RNAs Generated in the Chestnut Blight Fungus by an Inducible DCL-2-Dependent Pathway. J Virol82: 2613–2619. doi: 10.1128/JVI.02324-0718199652
    • (2008) J Virol , vol.82 , pp. 2613-2619
    • Zhang, X.1    Segers, G.C.2    Sun, Q.3    Deng, F.4    Nuss, D.L.5
  • 91
    • 41449095035 scopus 로고    scopus 로고
    • Aspergillus Mycoviruses Are Targets and Suppressors of RNA Silencing
    • 18065651, ().:–
    • Hammond TM, Andrewski MD, Roossinck MJ, Keller NP, (2008) Aspergillus Mycoviruses Are Targets and Suppressors of RNA Silencing. Eukaryot Cell7: 350–357. 18065651
    • (2008) Eukaryot Cell , vol.7 , pp. 350-357
    • Hammond, T.M.1    Andrewski, M.D.2    Roossinck, M.J.3    Keller, N.P.4
  • 92
    • 70649094266 scopus 로고    scopus 로고
    • Significantly low level of small RNA accumulation derived from an encapsidated mycovirus with dsRNA genome
    • 19878965, . ().:–
    • Himeno M, Maejima K, Komatsu K, Ozeki J, Hashimoto M, et al. (2010) Significantly low level of small RNA accumulation derived from an encapsidated mycovirus with dsRNA genome. Virology396: 69–75. doi: 10.1016/j.virol.2009.10.00819878965
    • (2010) Virology , vol.396 , pp. 69-75
    • Himeno, M.1    Maejima, K.2    Komatsu, K.3    Ozeki, J.4    Hashimoto, M.5
  • 93
    • 15544367902 scopus 로고    scopus 로고
    • RNA silencing in Aspergillus nidulans is independent of RNA-dependent RNA polymerases
    • 15545645, ().:–
    • Hammond TM, Keller NP, (2005) RNA silencing in Aspergillus nidulans is independent of RNA-dependent RNA polymerases. Genetics169: 607–617. 15545645
    • (2005) Genetics , vol.169 , pp. 607-617
    • Hammond, T.M.1    Keller, N.P.2
  • 94
    • 0000107950 scopus 로고
    • Sporulation of Colletotrichum lindemuthianum in culture
    • ().:–
    • Mathur R, Barnett H, Lilly V, (1950) Sporulation of Colletotrichum lindemuthianum in culture. Phytopathology40: 104–114.
    • (1950) Phytopathology , vol.40 , pp. 104-114
    • Mathur, R.1    Barnett, H.2    Lilly, V.3
  • 95
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
    • 23329690, ().:–
    • Katoh K, Standley DM, (2013) MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability. Mol Biol Evol30: 772–780. doi: 10.1093/molbev/mst01023329690
    • (2013) Mol Biol Evol , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 96
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
    • 24132122, ().:–
    • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S, (2013) MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Mol Biol Evol30: 2725–2729. doi: 10.1093/molbev/mst19724132122
    • (2013) Mol Biol Evol , vol.30 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5
  • 97
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: selection of best-fit models of protein evolution
    • 15647292, ().:–
    • Abascal F, Zardoya R, Posada D, (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics21: 2104–2105. 15647292
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 98
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • 16928733, ().:–
    • Stamatakis A, (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics22: 2688–2690. 16928733
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 99
    • 84868007353 scopus 로고    scopus 로고
    • Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks
    • 22780991, ().:–
    • Huson DH, Scornavacca C, (2012) Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks. Syst Biol61: 1061–1067. doi: 10.1093/sysbio/sys06222780991
    • (2012) Syst Biol , vol.61 , pp. 1061-1067
    • Huson, D.H.1    Scornavacca, C.2
  • 100
    • 66149160358 scopus 로고    scopus 로고
    • Comprehensive analysis of the Brassica juncea root proteome in response to cadmium exposure by complementary proteomic approaches
    • 19343712, . ().:–
    • Alvarez S, Berla BM, Sheffield J, Cahoon RE, Jez JM, et al. (2009) Comprehensive analysis of the Brassica juncea root proteome in response to cadmium exposure by complementary proteomic approaches. Proteomics9: 2419–2431. doi: 10.1002/pmic.20080047819343712
    • (2009) Proteomics , vol.9 , pp. 2419-2431
    • Alvarez, S.1    Berla, B.M.2    Sheffield, J.3    Cahoon, R.E.4    Jez, J.M.5
  • 101
    • 0037108887 scopus 로고    scopus 로고
    • Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search
    • 12403597, ().:–
    • Keller A, Nesvizhskii AI, Kolker E, Aebersold R, (2002) Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search. Anal Chem74: 5383–5392. 12403597
    • (2002) Anal Chem , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 102
    • 0042338362 scopus 로고    scopus 로고
    • A Statistical Model for Identifying Proteins by Tandem Mass Spectrometry
    • 14632076, ().:–
    • Nesvizhskii AI, Keller A, Kolker E, Aebersold R, (2003) A Statistical Model for Identifying Proteins by Tandem Mass Spectrometry. Anal Chem75: 4646–4658. 14632076
    • (2003) Anal Chem , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 103
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular weight plant DNA
    • 7433111, ().:–
    • Murray MG, Thompson WF, (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res8: 4321–4326. 7433111
    • (1980) Nucleic Acids Res , vol.8 , pp. 4321-4326
    • Murray, M.G.1    Thompson, W.F.2
  • 104
    • 84868089450 scopus 로고    scopus 로고
    • Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants
    • 23023169, . ().:–
    • Carbonell A, Fahlgren N, Garcia-Ruiz H, Gilbert KB, Montgomery TA, et al. (2012) Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants. Plant Cell24: 3613–3629. doi: 10.1105/tpc.112.09994523023169
    • (2012) Plant Cell , vol.24 , pp. 3613-3629
    • Carbonell, A.1    Fahlgren, N.2    Garcia-Ruiz, H.3    Gilbert, K.B.4    Montgomery, T.A.5
  • 105
    • 84899823774 scopus 로고    scopus 로고
    • New Generation of Artificial MicroRNA and Synthetic Trans-Acting Small Interfering RNA Vectors for Efficient Gene Silencing in Arabidopsis
    • 24647477, . ().:–
    • Carbonell A, Takeda A, Fahlgren N, Johnson SC, Cuperus JT, et al. (2014) New Generation of Artificial MicroRNA and Synthetic Trans-Acting Small Interfering RNA Vectors for Efficient Gene Silencing in Arabidopsis. Plant Physiol165: 15–29. doi: 10.1104/pp.113.23498924647477
    • (2014) Plant Physiol , vol.165 , pp. 15-29
    • Carbonell, A.1    Takeda, A.2    Fahlgren, N.3    Johnson, S.C.4    Cuperus, J.T.5
  • 108
    • 6344289639 scopus 로고    scopus 로고
    • Inverted Repeat Structure of the Human Genome: The X-Chromosome Contains a Preponderance of Large, Highly Homologous Inverted Repeats That Contain Testes Genes
    • 15466286, ().:–
    • Warburton PE, Giordano J, Cheung F, Gelfand Y, Benson G, (2004) Inverted Repeat Structure of the Human Genome: The X-Chromosome Contains a Preponderance of Large, Highly Homologous Inverted Repeats That Contain Testes Genes. Genome Res14: 1861–1869. 15466286
    • (2004) Genome Res , vol.14 , pp. 1861-1869
    • Warburton, P.E.1    Giordano, J.2    Cheung, F.3    Gelfand, Y.4    Benson, G.5
  • 109
    • 80054789260 scopus 로고    scopus 로고
    • A low-cost library construction protocol and data analysis pipeline for Illumina-based strand-specific multiplex RNA-seq
    • 22039485
    • Wang L, Si Y, Dedow LK, Shao Y, Liu P, et al. (2011) A low-cost library construction protocol and data analysis pipeline for Illumina-based strand-specific multiplex RNA-seq. PloS one6: e26426. doi: 10.1371/journal.pone.002642622039485
    • (2011) PloS one , vol.6 , pp. e26426
    • Wang, L.1    Si, Y.2    Dedow, L.K.3    Shao, Y.4    Liu, P.5
  • 110
    • 4444221565 scopus 로고    scopus 로고
    • UCSF Chimera—A visualization system for exploratory research and analysis
    • 15264254, . ().:–
    • Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, et al. (2004) UCSF Chimera—A visualization system for exploratory research and analysis. J Comput Chem25: 1605–1612. 15264254
    • (2004) J Comput Chem , vol.25 , pp. 1605-1612
    • Pettersen, E.F.1    Goddard, T.D.2    Huang, C.C.3    Couch, G.S.4    Greenblatt, D.M.5
  • 111
    • 84861451595 scopus 로고    scopus 로고
    • The Crystal Structure of Human Argonaute2
    • ().:–
    • Schirle NT, MacRae IJ, (2012) The Crystal Structure of Human Argonaute2. Science (New York, NY)336: 1037–1040.
    • (2012) Science (New York, NY) , vol.336 , pp. 1037-1040
    • Schirle, N.T.1    MacRae, I.J.2
  • 112
    • 84863624199 scopus 로고    scopus 로고
    • The Structure of Human Argonaute-2 in Complex with miR-20a
    • 22682761, . ().:–
    • Elkayam E, Kuhn C-D, Tocilj A, Haase AD, Greene EM, et al. (2012) The Structure of Human Argonaute-2 in Complex with miR-20a. Cell150: 100–110. doi: 10.1016/j.cell.2012.05.01722682761
    • (2012) Cell , vol.150 , pp. 100-110
    • Elkayam, E.1    Kuhn, C.-D.2    Tocilj, A.3    Haase, A.D.4    Greene, E.M.5
  • 113
    • 18744407284 scopus 로고    scopus 로고
    • Purified Argonaute2 and an siRNA form recombinant human RISC
    • 15800637, . ().:–
    • Rivas FV, Tolia NH, Song J-J, Aragon JP, Liu J, et al. (2005) Purified Argonaute2 and an siRNA form recombinant human RISC. Nat Struct Mol Biol12: 340–349. 15800637
    • (2005) Nat Struct Mol Biol , vol.12 , pp. 340-349
    • Rivas, F.V.1    Tolia, N.H.2    Song, J.-J.3    Aragon, J.P.4    Liu, J.5
  • 114
    • 4444368187 scopus 로고    scopus 로고
    • Argonaute2 Is the Catalytic Engine of Mammalian RNAi
    • 15284456, . ().:–
    • Liu J, Carmell MA, Rivas FV, Marsden CG, Thomson JM, et al. (2004) Argonaute2 Is the Catalytic Engine of Mammalian RNAi. Science305: 1437–1441. 15284456
    • (2004) Science , vol.305 , pp. 1437-1441
    • Liu, J.1    Carmell, M.A.2    Rivas, F.V.3    Marsden, C.G.4    Thomson, J.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.