PGA: An R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq

BMC Bioinformatics

Volumn 17, Issue 1, 2016, Pages

  Wen, Bo ^a   Xu, Shaohang ^a   Zhou, Ruo ^a   Zhang, Bing ^c   Wang, Xiaojing ^c   Liu, Xin ^a   Xu, Xun ^a   Liu, Siqi ^a,b  

^a BGI SHENZHEN   (China)

^b Chinese Academy of Sciences   (China)

^c VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

MS MS; Peptide identification; Proteogenomics; Proteomics; RNA Seq

Indexed keywords

DATABASE SYSTEMS; MASS SPECTROMETRY; MOLECULAR BIOLOGY; PIPELINES; RNA;

END-TO-END SOLUTIONS; MS/MS; PEPTIDE IDENTIFICATION; PLATFORM INDEPENDENT; PROTEOGENOMICS; PROTEOMICS; REFERENCE DATABASE; TANDEM MASS SPECTROMETRY;

PEPTIDES;

PEPTIDE;

HUMAN; ISOLATION AND PURIFICATION; PROCEDURES; PROTEIN DATABASE; PROTEOMICS; SEQUENCE ANALYSIS; SOFTWARE; TANDEM MASS SPECTROMETRY;

DATABASES, PROTEIN; HUMANS; PEPTIDES; PROTEOMICS; SEQUENCE ANALYSIS, RNA; SOFTWARE; TANDEM MASS SPECTROMETRY;

EID: 84975122069     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/s12859-016-1133-3     Document Type: Article

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