A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies

Proteomics

Volumn 13, Issue 8, 2013, Pages 1352-1357

  Jagtap, Pratik ^a   Goslinga, Jill ^a   Kooren, Joel A ^a   Mcgowan, Thomas ^a   Wroblewski, Matthew S ^a   Seymour, Sean L ^b   Griffin, Timothy J ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

^b MDS SCIEX   (Canada)

Author keywords

Bioinformatics; Mass spectrometry; Metaproteomics; Proteogenomics; Sequence database search; Two step workflow

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; DATA BASE; FALSE POSITIVE RESULT; GENOMICS; HUMAN; MASS SPECTROMETRY; METHODOLOGY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; SENSITIVITY ANALYSIS;

ALGORITHMS; AMINO ACID SEQUENCE; DATABASES, PROTEIN; EXPRESSED SEQUENCE TAGS; GENOMICS; HUMANS; METAGENOME; MOUTH MUCOSA; PEPTIDES; PROTEOMICS; SALIVA; SEARCH ENGINE; SENSITIVITY AND SPECIFICITY; SOFTWARE; TANDEM MASS SPECTROMETRY;

EID: 84876329019     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201200352     Document Type: Article

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