Large-scale mass spectrometric detection of variant peptides resulting from nonsynonymous nucleotide differences

Journal of Proteome Research

Volumn 13, Issue 1, 2014, Pages 228-240

  Sheynkman, Gloria M ^a   Shortreed, Michael R ^a   Frey, Brian L ^a   Scalf, Mark ^a   Smith, Lloyd M ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

allele specific expression; amino acid polymorphism; Bowtie; differential allelic expression; mass spectrometry; multiple proteases; PolyPhen 2; proteoforms; RNA Seq; SAMtools; SIFT; single nucleotide polymorphisms; single nucleotide variants; Tophat; variant peptides

Indexed keywords

NUCLEOTIDE; PEPTIDE; PROTEINASE;

ALLELE; AMINO ACID SEQUENCE; ARTICLE; DNA POLYMORPHISM; GENOME; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HUMAN; HUMAN CELL; HUMAN CELL CULTURE; INTRON; LEUKEMIA CELL LINE; MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEOMICS; RNA SEQUENCE; SEQUENCE DATABASE;

AMINO ACID SEQUENCE; BASE SEQUENCE; HUMANS; JURKAT CELLS; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; NUCLEOTIDES; PEPTIDES;

EID: 84891818263     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr4009207     Document Type: Article

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