메뉴 건너뛰기




Volumn 3, Issue , 2007, Pages

Novel peptide identification from tandem mass spectra using ESTs and sequence database compression

Author keywords

Alternative splicing; Expressed sequence tags; Proteomics; Sequence compression; Tandem mass spectra

Indexed keywords

ASPARTYLTHREONYLGLUTAMYLGLUTAMYLGLUTAMYLASPARTYLPHENYLALANYL HISTIDYLVALYLASPARTYLGLUTAMINYLALANYLTHREONYLTHREONYLVALYLLYSINE; ASPARTYLTHREONYLGLUTAMYLGLUTAMYLGLUTAMYLASPARTYLPHENYLALANYL HISTIDYLVALYLASPARTYLGLUTAMINYLVALYLTHREONYLTHREONYLVALYLLYSINE; HISTIDYLGLUTAMYLGLUTAMINYLALANYLSERYLASPARAGINYLVALYLLEUCYL SERYLASPARTYLISOLEUCYLSERYLGLUTAMYLPHENYLALANYLARGININE; ISOPROTEIN; LEUCYLGLUTAMINYLGLYCYLSERYLALANYLTHREONYLALANYLALANYLGLUTAMYLALANYL GLUTAMINYLVALYLGLYCYLHISTIDYLGLUTAMINYLTHREONYLALANYLARGININE; LEUCYLGLUTAMINYLHISTIDYLLEUCYLGLUTAMYLASPARAGINYLGLUTAMYLLEUCYL THREONYLHISTIDYLASPARTYLISOLEUCYLISOLEUCYLTHREONYLLYSINE; LEUCYLGLUTAMINYLHISTIDYLLEUCYLVALYLASPARAGINYLGLUTAMYLLEUCYL THREONYLHISTIDYLASPARTYLISOLEUCYLISOLEUCYLTHREONYLLYSINE; LEUCYLGLUTAMINYLTHREONYLALANYLSERYLASPARTYLGLUTAMYLSERYLTYROSYLLYSYL ASPARTYLPROLYLTHREONYLASPARAGINYLISOLEUCYLGLUTAMINYLLEUCYLSERYLLYSINE; LYSYLALANYLASPARTYLASPARTYLTHREONYLTRYPTOPHYLGLUTAMYLPROLYLPHENYL ALANYLALANYLSERYLGLYCYLLYSINE; PEPTIDE; THREONYLALANYLGLYCYLSERYLPROLYLLEUCYLCYSTEINYLLEUCYLPROLYLTHREONYL PROLYLGLYCYLALANYLALANYLPROLYLGLYCYLSERYLALANYLGLYCYLSERYLCYSTEINYLSERYL HISTIDYLARGININE; UNCLASSIFIED DRUG; MESSENGER RNA;

EID: 34247254351     PISSN: 17444292     EISSN: 17444292     Source Type: Journal    
DOI: 10.1038/msb4100142     Document Type: Article
Times cited : (63)

References (22)
  • 2
    • 0027249595 scopus 로고
    • dbEST - database for 'expressed sequence tags'
    • Boguski M, Lowe T, Tolstoshev C (1993) dbEST - database for 'expressed sequence tags'. Nat Genet 4: 332-333
    • (1993) Nat Genet , vol.4 , pp. 332-333
    • Boguski, M.1    Lowe, T.2    Tolstoshev, C.3
  • 3
    • 0004139889 scopus 로고
    • W.H. Freeman and Company, New York
    • Chvátal V (1983) Linear Programming. W.H. Freeman and Company, New York
    • (1983) Linear Programming
    • Chvátal, V.1
  • 4
    • 3142702204 scopus 로고    scopus 로고
    • TANDEM: Matching proteins with tandem mass spectra
    • Craig R, Beavis RC (2004) TANDEM: matching proteins with tandem mass spectra. Bioinformatics 20: 1466-1467
    • (2004) Bioinformatics , vol.20 , pp. 1466-1467
    • Craig, R.1    Beavis, R.C.2
  • 7
    • 0002293349 scopus 로고
    • Matching, Euler tours and the Chinese postman
    • Edmonds J, Johnson E (1973) Matching, Euler tours and the Chinese postman. Mathematical Programming 5: 88-124
    • (1973) Mathematical Programming , vol.5 , pp. 88-124
    • Edmonds, J.1    Johnson, E.2
  • 8
    • 35048904499 scopus 로고    scopus 로고
    • Sequence database compression for peptide identification from tandem mass spectra
    • Proceedings of the 4th International Workshop, WABI 2004, of
    • Edwards N, Lippert R (2004) Sequence database compression for peptide identification from tandem mass spectra. In Proceedings of the 4th International Workshop, WABI 2004, Volume 3240 of Lecture Notes in Computer Science, pages 230-241
    • (2004) Lecture Notes in Computer Science , vol.3240 , pp. 230-241
    • Edwards, N.1    Lippert, R.2
  • 9
    • 34247179526 scopus 로고    scopus 로고
    • Faster, more sensitive peptide identification from tandem mass spectra by sequence database compression. Poster
    • Edwards NJ (2005) Faster, more sensitive peptide identification from tandem mass spectra by sequence database compression. Poster. 1st Annual US HUPO Symposium.
    • (2005) 1st Annual US HUPO Symposium
    • Edwards, N.J.1
  • 10
    • 33745054329 scopus 로고    scopus 로고
    • Fermin D, Allen BB, Blackwell TW, Menon R, Adamski M, Xu Y, Ulintz P, Omenn GS, States DJ (2006) Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics. Genome Biol 7: R35
    • Fermin D, Allen BB, Blackwell TW, Menon R, Adamski M, Xu Y, Ulintz P, Omenn GS, States DJ (2006) Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics. Genome Biol 7: R35
  • 11
    • 0001852170 scopus 로고    scopus 로고
    • An efficient implementation of a scaling minimum-cost flow algorithm
    • Goldberg AV (1997) An efficient implementation of a scaling minimum-cost flow algorithm. J Algorithms 22: 1-29
    • (1997) J Algorithms , vol.22 , pp. 1-29
    • Goldberg, A.V.1
  • 14
    • 33645708138 scopus 로고    scopus 로고
    • Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: Toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides
    • Nesvizhskii AI, Roos FF, Grossmann J, Vogelzang M, Eddes JS, Gruissem W, Baginsky S, Aebersold R (2006) Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides. Mol Cell Proteomics 5: 652-670
    • (2006) Mol Cell Proteomics , vol.5 , pp. 652-670
    • Nesvizhskii, A.I.1    Roos, F.F.2    Grossmann, J.3    Vogelzang, M.4    Eddes, J.S.5    Gruissem, W.6    Baginsky, S.7    Aebersold, R.8
  • 16
    • 23944492134 scopus 로고    scopus 로고
    • Omenn GS, States DJ, Adamski M, Blackwell TW, Menon R, Hermjakob H, Apweiler R, Haab BB, Simpson RJ, Eddes JS, Kapp EA, Moritz RL, Chan DW, Rai AJ, Admon A, Aebersold R, Eng J, Hancock WS, Hefta SA, Meyer H, Paik YK, Yoo JS, Ping P, Pounds J, Adkins J, Qian X, Wang R, Wasinger V, Wu CY, Zhao X, Zeng R, Archakov A, Tsugita A, Beer I, Pandey A, Pisano M, Andrews P, Tammen H, Speicher DW, Hanash SM (2005) Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics 5: 3226-3245
    • Omenn GS, States DJ, Adamski M, Blackwell TW, Menon R, Hermjakob H, Apweiler R, Haab BB, Simpson RJ, Eddes JS, Kapp EA, Moritz RL, Chan DW, Rai AJ, Admon A, Aebersold R, Eng J, Hancock WS, Hefta SA, Meyer H, Paik YK, Yoo JS, Ping P, Pounds J, Adkins J, Qian X, Wang R, Wasinger V, Wu CY, Zhao X, Zeng R, Archakov A, Tsugita A, Beer I, Pandey A, Pisano M, Andrews P, Tammen H, Speicher DW, Hanash SM (2005) Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics 5: 3226-3245
  • 17
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins DN, Pappin DJ, Creasy DM, Cottrell JS (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20: 3551-3567
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 18
    • 0024474332 scopus 로고
    • l-tuple DNA sequencing: Computer analysis
    • Pevzner PA (1989) l-tuple DNA sequencing: Computer analysis. J Biomol Struct Dyn 7: 63-73
    • (1989) J Biomol Struct Dyn , vol.7 , pp. 63-73
    • Pevzner, P.A.1
  • 22
    • 0029645432 scopus 로고
    • Mining genomes: Correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases
    • Yates III JR, Eng JK, McCormack AL (1995) Mining genomes: correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases. Anal Chem 67: 3202-3210
    • (1995) Anal Chem , vol.67 , pp. 3202-3210
    • Yates III, J.R.1    Eng, J.K.2    McCormack, A.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.