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Volumn 30, Issue 15, 2014, Pages 2233-2234

RTANDEM, an R/Bioconductor package for MS/MS protein identification

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; COMPUTER GRAPHICS; COMPUTER INTERFACE; COMPUTER PROGRAM; INTERNET; METHODOLOGY; PROTEIN DATABASE; PROTEOMICS; TANDEM MASS SPECTROMETRY;

EID: 84905001675     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu178     Document Type: Article
Times cited : (9)

References (12)
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    • Craig R and Beavis C R (2004) TANDEM: Matching proteins with tandem mass spectra Bioinformatics 20(9), 1466-67.
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    • Craig, R.1    Beavis, C.R.2
  • 5
    • 68449101067 scopus 로고    scopus 로고
    • Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
    • Durinck S, Spellman PT, Birney E, Huber W (2009) Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt, Nat Protoc. 4(8), 1184-91.
    • (2009) Nat Protoc. , vol.4 , Issue.8 , pp. 1184-1191
    • Durinck, S.1    Spellman, P.T.2    Birney, E.3    Huber, W.4
  • 7
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • Gentleman RC, Carey VJ, Bates DM et al. (2004) Bioconductor: Open software development for computational biology and bioinformatics, Genome Biol. 5(10), R80.
    • (2004) Genome Biol. , vol.5 , Issue.10
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3
  • 8
    • 33746930864 scopus 로고    scopus 로고
    • A uniform proteomics MS/MS analysis platform utilizing open XML file formats
    • 2005 0017
    • Keller A, Eng JK, Zhang N, Li XJ, Aebersold R (2005) A uniform proteomics MS/MS analysis platform utilizing open XML file formats. Mol. Syst. Biol. 1:2005.0017.
    • (2005) Mol. Syst. Biol. , vol.1
    • Keller, A.1    Eng, J.K.2    Zhang, N.3    Li, X.J.4    Aebersold, R.5
  • 9
    • 84892685740 scopus 로고    scopus 로고
    • PTMTreeSearch: A novel two-stage tree-search algorithm with pruning rules for the identification of post-Translational modifications of proteins in MS/MS spectra
    • Kertesz-Farkas A, Reiz B, Vera R, Myers MP, Pongor S (2014) PTMTreeSearch: A novel two-stage tree-search algorithm with pruning rules for the identification of post-Translational modifications of proteins in MS/MS spectra. Bioinformatics 30(2):234-41.
    • (2014) Bioinformatics , vol.30 , Issue.2 , pp. 234-241
    • Kertesz-Farkas, A.1    Reiz, B.2    Vera, R.3    Myers, M.P.4    Pongor, S.5
  • 10
    • 84885234215 scopus 로고    scopus 로고
    • Quantitative proteomic analysis of micordissected breast cancer tissues : Comparison of label-free and SILAC-based quantification with shotgun, directed and targeted MS approaches
    • Liu NQ, Dekker LJ, Stingl C, Güzel C, De Marchi T, Martens JW, Foekens JA, Luider TM, Umar A (2013) Quantitative proteomic analysis of micordissected breast cancer tissues : Comparison of label-free and SILAC-based quantification with shotgun, directed and targeted MS approaches. J Proteome Res. 12(10):4627-41.
    • (2013) J Proteome Res. , vol.12 , Issue.10 , pp. 4627-4641
    • Liu, N.Q.1    Dekker, L.J.2    Stingl, C.3    Güzel, C.4    De Marchi, T.5    Martens, J.W.6    Foekens, J.A.7    Luider, T.M.8    Umar, A.9
  • 11
    • 33750979860 scopus 로고    scopus 로고
    • General framework for developing and evaluating database scoring algorithms using the TANDEM search engine
    • MacClean B, Eng JK, McIntosh M (2006) General framework for developing and evaluating database scoring algorithms using the TANDEM search engine. Bioinformatics. 22(22), 2830-2.
    • (2006) Bioinformatics. , vol.22 , Issue.22 , pp. 2830-2832
    • MacClean, B.1    Eng, J.K.2    McIntosh, M.3
  • 12
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    • RamiGO: An R/Bioconductor package providing an AmiGO visualize interface
    • Schröder MS (2013) RamiGO: An R/Bioconductor package providing an AmiGO visualize interface, Bioinformatics 29(5), 666-8.
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.