-
1
-
-
84928333221
-
Measuring Electric Fields and Noncovalent Interactions Using the Vibrational Stark Effect
-
Fried, S. D.; Boxer, S. G. Measuring Electric Fields and Noncovalent Interactions Using the Vibrational Stark Effect Acc. Chem. Res. 2015, 48, 998-1006 10.1021/ar500464j
-
(2015)
Acc. Chem. Res.
, vol.48
, pp. 998-1006
-
-
Fried, S.D.1
Boxer, S.G.2
-
2
-
-
84985574355
-
Supramolecular Chemistry - Scope and Perspectives Molecules, Supermolecules, and Molecular Devices
-
Lehn, J. M. Supramolecular Chemistry-Scope and Perspectives Molecules, Supermolecules, and Molecular Devices Angew. Chem., Int. Ed. Engl. 1988, 27, 89-112 10.1002/anie.198800891
-
(1988)
Angew. Chem., Int. Ed. Engl.
, vol.27
, pp. 89-112
-
-
Lehn, J.M.1
-
3
-
-
33748633480
-
Electrostatic Basis for Enzyme Catalysis
-
Warshel, A.; Sharma, P. K.; Kato, M.; Xiang, Y.; Liu, H.; Olsson, M. H. M. Electrostatic Basis for Enzyme Catalysis Chem. Rev. 2006, 106, 3210-3235 10.1021/cr0503106
-
(2006)
Chem. Rev.
, vol.106
, pp. 3210-3235
-
-
Warshel, A.1
Sharma, P.K.2
Kato, M.3
Xiang, Y.4
Liu, H.5
Olsson, M.H.M.6
-
4
-
-
0025891413
-
Electrostatic Energy and Macromolecular Function
-
Warshel, A.; Aqvist, J. Electrostatic Energy and Macromolecular Function Annu. Rev. Biophys. Biophys. Chem. 1991, 20, 267-298 10.1146/annurev.bb.20.060191.001411
-
(1991)
Annu. Rev. Biophys. Biophys. Chem.
, vol.20
, pp. 267-298
-
-
Warshel, A.1
Aqvist, J.2
-
5
-
-
77749239790
-
Ketosteroid Isomerase Provides Further Support for the Idea That Enzymes Work by Electrostatic Preorganization
-
Kamerlin, S. C. L.; Sharma, P. K.; Chu, Z. T.; Warshel, A. Ketosteroid Isomerase Provides Further Support for the Idea That Enzymes Work by Electrostatic Preorganization Proc. Natl. Acad. Sci. U. S. A. 2010, 107, 4075-4080 10.1073/pnas.0914579107
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 4075-4080
-
-
Kamerlin, S.C.L.1
Sharma, P.K.2
Chu, Z.T.3
Warshel, A.4
-
6
-
-
80052149070
-
Catalysis by Dihydrofolate Reductase and Other Enzymes Arises from Electrostatic Preorganization, Not Conformational Motions
-
Adamczyk, A. J.; Cao, J.; Kamerlin, S. C. L.; Warshel, A. Catalysis by Dihydrofolate Reductase and Other Enzymes Arises from Electrostatic Preorganization, Not Conformational Motions Proc. Natl. Acad. Sci. U. S. A. 2011, 108, 14115-14120 10.1073/pnas.1111252108
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 14115-14120
-
-
Adamczyk, A.J.1
Cao, J.2
Kamerlin, S.C.L.3
Warshel, A.4
-
7
-
-
80053641898
-
Direct Measurement of the Protein Response to an Electrostatic Perturbation That Mimics the Catalytic Cycle in Ketosteroid Isomerase
-
Jha, S. K.; Ji, M.; Gaffney, K. J.; Boxer, S. G. Direct Measurement of the Protein Response to an Electrostatic Perturbation That Mimics the Catalytic Cycle in Ketosteroid Isomerase Proc. Natl. Acad. Sci. U. S. A. 2011, 108, 16612-16617 10.1073/pnas.1113874108
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 16612-16617
-
-
Jha, S.K.1
Ji, M.2
Gaffney, K.J.3
Boxer, S.G.4
-
8
-
-
0041429611
-
Apparent Nac Effect in Chorismate Mutase Reflects Electrostatic Transition State Stabilization
-
Strajbl, M.; Shurki, A.; Kato, M.; Warshel, A. Apparent Nac Effect in Chorismate Mutase Reflects Electrostatic Transition State Stabilization J. Am. Chem. Soc. 2003, 125, 10228-10237 10.1021/ja0356481
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 10228-10237
-
-
Strajbl, M.1
Shurki, A.2
Kato, M.3
Warshel, A.4
-
9
-
-
0034102419
-
Electrostatic Stress in Catalysis: Structure and Mechanism of the Enzyme Orotidine Monophosphate Decarboxylase
-
Wu, N.; Mo, Y. R.; Gao, J. L.; Pai, E. F. Electrostatic Stress in Catalysis: Structure and Mechanism of the Enzyme Orotidine Monophosphate Decarboxylase Proc. Natl. Acad. Sci. U. S. A. 2000, 97, 2017-2022 10.1073/pnas.050417797
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 2017-2022
-
-
Wu, N.1
Mo, Y.R.2
Gao, J.L.3
Pai, E.F.4
-
10
-
-
0029016182
-
Classical Electrostatics in Biology and Chemistry
-
Honig, B.; Nicholls, A. Classical Electrostatics in Biology and Chemistry Science 1995, 268, 1144-1149 10.1126/science.7761829
-
(1995)
Science
, vol.268
, pp. 1144-1149
-
-
Honig, B.1
Nicholls, A.2
-
11
-
-
84919430407
-
Extreme Electric Fields Power Catalysis in the Active Site of Ketosteroid Isomerase
-
Fried, S. D.; Bagchi, S.; Boxer, S. G. Extreme Electric Fields Power Catalysis in the Active Site of Ketosteroid Isomerase Science 2014, 346, 1510-1514 10.1126/science.1259802
-
(2014)
Science
, vol.346
, pp. 1510-1514
-
-
Fried, S.D.1
Bagchi, S.2
Boxer, S.G.3
-
12
-
-
84904329758
-
Cyclophilin a Catalyzes Proline Isomerization by an Electrostatic Handle Mechanism
-
Camilloni, C.; Sahakyan, A. B.; Holliday, M. J.; Isern, N. G.; Zhang, F.; Eisenmesser, E. Z.; Vendruscolo, M. Cyclophilin a Catalyzes Proline Isomerization by an Electrostatic Handle Mechanism Proc. Natl. Acad. Sci. U. S. A. 2014, 111, 10203-10208 10.1073/pnas.1404220111
-
(2014)
Proc. Natl. Acad. Sci. U. S. A.
, vol.111
, pp. 10203-10208
-
-
Camilloni, C.1
Sahakyan, A.B.2
Holliday, M.J.3
Isern, N.G.4
Zhang, F.5
Eisenmesser, E.Z.6
Vendruscolo, M.7
-
13
-
-
84904878087
-
Probing the Electrostatics of Active Site Microenvironments Along the Catalytic Cycle for Escherichia coli Dihydrofolate Reductase
-
Liu, C. T.; Layfield, J. P.; Stewart, R. J., III; French, J. B.; Hanoian, P.; Asbury, J. B.; Hammes-Schiffer, S.; Benkovic, S. J. Probing the Electrostatics of Active Site Microenvironments Along the Catalytic Cycle for Escherichia Coli Dihydrofolate Reductase J. Am. Chem. Soc. 2014, 136, 10349-10360 10.1021/ja5038947
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 10349-10360
-
-
Liu, C.T.1
Layfield, J.P.2
Stewart, R.J.3
French, J.B.4
Hanoian, P.5
Asbury, J.B.6
Hammes-Schiffer, S.7
Benkovic, S.J.8
-
14
-
-
77951226274
-
At the Dawn of the 21st Century: Is Dynamics the Missing Link for Understanding Enzyme Catalysis?
-
Kamerlin, S. C. L.; Warshel, A. At the Dawn of the 21st Century: Is Dynamics the Missing Link for Understanding Enzyme Catalysis? Proteins: Struct., Funct., Genet. 2010, 78, 1339-1375 10.1002/prot.22654
-
(2010)
Proteins: Struct., Funct., Genet.
, vol.78
, pp. 1339-1375
-
-
Kamerlin, S.C.L.1
Warshel, A.2
-
15
-
-
0001257322
-
Vibrational Stark Spectroscopy in Proteins: A Probe and Calibration for Electrostatic Fields
-
Park, E. S.; Andrews, S. S.; Hu, R. B.; Boxer, S. G. Vibrational Stark Spectroscopy in Proteins: A Probe and Calibration for Electrostatic Fields J. Phys. Chem. B 1999, 103, 9813-9817 10.1021/jp992329g
-
(1999)
J. Phys. Chem. B
, vol.103
, pp. 9813-9817
-
-
Park, E.S.1
Andrews, S.S.2
Hu, R.B.3
Boxer, S.G.4
-
16
-
-
33746017658
-
Electric Fields at the Active Site of an Enzyme: Direct Comparison of Experiment with Theory
-
Suydam, I. T.; Snow, C. D.; Pande, V. S.; Boxer, S. G. Electric Fields at the Active Site of an Enzyme: Direct Comparison of Experiment with Theory Science 2006, 313, 200-204 10.1126/science.1127159
-
(2006)
Science
, vol.313
, pp. 200-204
-
-
Suydam, I.T.1
Snow, C.D.2
Pande, V.S.3
Boxer, S.G.4
-
17
-
-
43949094162
-
Carbon-Deuterium Bonds as Probes of Dihydrofolate Reductase
-
Thielges, M. C.; Case, D. A.; Romesberg, F. E. Carbon-Deuterium Bonds as Probes of Dihydrofolate Reductase J. Am. Chem. Soc. 2008, 130, 6597-6603 10.1021/ja0779607
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 6597-6603
-
-
Thielges, M.C.1
Case, D.A.2
Romesberg, F.E.3
-
18
-
-
67349121748
-
Ftir Analysis of Gpcr Activation Using Azido Probes
-
Ye, S.; Huber, T.; Vogel, R.; Sakmar, T. P. Ftir Analysis of Gpcr Activation Using Azido Probes Nat. Chem. Biol. 2009, 5, 397-399 10.1038/nchembio.167
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 397-399
-
-
Ye, S.1
Huber, T.2
Vogel, R.3
Sakmar, T.P.4
-
19
-
-
0028328331
-
Structural Determinants of the Stretching Frequency of CO Bound to Myoglobin
-
Li, T. S.; Quillin, M. L.; Phillips, G. N.; Olson, J. S. Structural Determinants of the Stretching Frequency of CO Bound to Myoglobin Biochemistry 1994, 33, 1433-1446 10.1021/bi00172a021
-
(1994)
Biochemistry
, vol.33
, pp. 1433-1446
-
-
Li, T.S.1
Quillin, M.L.2
Phillips, G.N.3
Olson, J.S.4
-
20
-
-
77957576143
-
Azidohomoalanine: A Conformationally Sensitive IR Probe of Protein Folding, Protein Structure, and Electrostatics
-
Taskent-Sezgin, H.; Chung, J.; Banerjee, P. S.; Nagarajan, S.; Dyer, R. B.; Carrico, I.; Raleigh, D. P. Azidohomoalanine: A Conformationally Sensitive IR Probe of Protein Folding, Protein Structure, and Electrostatics Angew. Chem., Int. Ed. 2010, 49, 7473-7475 10.1002/anie.201003325
-
(2010)
Angew. Chem., Int. Ed.
, vol.49
, pp. 7473-7475
-
-
Taskent-Sezgin, H.1
Chung, J.2
Banerjee, P.S.3
Nagarajan, S.4
Dyer, R.B.5
Carrico, I.6
Raleigh, D.P.7
-
21
-
-
79961229861
-
Direct Measurement of the Membrane Dipole Field in Bicelles Using Vibrational Stark Effect Spectroscopy
-
Hu, W.; Webb, L. J. Direct Measurement of the Membrane Dipole Field in Bicelles Using Vibrational Stark Effect Spectroscopy J. Phys. Chem. Lett. 2011, 2, 1925-1930 10.1021/jz200729a
-
(2011)
J. Phys. Chem. Lett.
, vol.2
, pp. 1925-1930
-
-
Hu, W.1
Webb, L.J.2
-
22
-
-
84923334918
-
Measurement of the Membrane Dipole Electric Field in DMPC Vesicles Using Vibrational Shifts of P-Cyanophenylalanine and Molecular Dynamics Simulations
-
Shrestha, R.; Cardenas, A. E.; Elber, R.; Webb, L. J. Measurement of the Membrane Dipole Electric Field in DMPC Vesicles Using Vibrational Shifts of P-Cyanophenylalanine and Molecular Dynamics Simulations J. Phys. Chem. B 2015, 119, 2869-2876 10.1021/jp511677j
-
(2015)
J. Phys. Chem. B
, vol.119
, pp. 2869-2876
-
-
Shrestha, R.1
Cardenas, A.E.2
Elber, R.3
Webb, L.J.4
-
23
-
-
62249162246
-
Vibrational Solvatochromism and Electrochromism: Coarse-Grained Models and Their Relationships
-
Cho, M. Vibrational Solvatochromism and Electrochromism: Coarse-Grained Models and Their Relationships J. Chem. Phys. 2009, 130, 094505 10.1063/1.3079609
-
(2009)
J. Chem. Phys.
, vol.130
, pp. 094505
-
-
Cho, M.1
-
24
-
-
0030624708
-
Stark Spectroscopy: Applications in Chemistry, Biology, and Materials Science
-
Bublitz, G. U.; Boxer, S. G. Stark Spectroscopy: Applications in Chemistry, Biology, and Materials Science Annu. Rev. Phys. Chem. 1997, 48, 213-242 10.1146/annurev.physchem.48.1.213
-
(1997)
Annu. Rev. Phys. Chem.
, vol.48
, pp. 213-242
-
-
Bublitz, G.U.1
Boxer, S.G.2
-
25
-
-
65249172623
-
Stark Realities
-
Boxer, S. G. Stark Realities J. Phys. Chem. B 2009, 113, 2972-2983 10.1021/jp8067393
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 2972-2983
-
-
Boxer, S.G.1
-
26
-
-
84926459121
-
Site-Specific Infrared Probes of Proteins
-
Ma, J.; Pazos, I. M.; Zhang, W.; Culik, R. M.; Gai, F. Site-Specific Infrared Probes of Proteins Annu. Rev. Phys. Chem. 2015, 66, 357-377 10.1146/annurev-physchem-040214-121802
-
(2015)
Annu. Rev. Phys. Chem.
, vol.66
, pp. 357-377
-
-
Ma, J.1
Pazos, I.M.2
Zhang, W.3
Culik, R.M.4
Gai, F.5
-
27
-
-
84906534310
-
Vibrational Dynamics and Solvatochromism of the Label SCN in Various Solvents and Hemoglobin by Time Dependent IR and 2D-IR Spectroscopy
-
van Wilderen, L. J. G. W.; Kern-Michler, D.; Mueller-Werkmeister, H. M.; Bredenbeck, J. Vibrational Dynamics and Solvatochromism of the Label SCN in Various Solvents and Hemoglobin by Time Dependent IR and 2D-IR Spectroscopy Phys. Chem. Chem. Phys. 2014, 16, 19643-19653 10.1039/C4CP01498G
-
(2014)
Phys. Chem. Chem. Phys.
, vol.16
, pp. 19643-19653
-
-
Van Wilderen, L.J.G.W.1
Kern-Michler, D.2
Mueller-Werkmeister, H.M.3
Bredenbeck, J.4
-
28
-
-
0034645571
-
Vibrational Stark Spectroscopy of No Bound to Heme: Effects of Protein Electrostatic Fields on the No Stretch Frequency
-
Park, E. S.; Thomas, M. R.; Boxer, S. G. Vibrational Stark Spectroscopy of No Bound to Heme: Effects of Protein Electrostatic Fields on the No Stretch Frequency J. Am. Chem. Soc. 2000, 122, 12297-12303 10.1021/ja0014741
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 12297-12303
-
-
Park, E.S.1
Thomas, M.R.2
Boxer, S.G.3
-
29
-
-
0034499168
-
Vibrational Stark Effects of Nitriles I. Methods and Experimental Results
-
Andrews, S. S.; Boxer, S. G. Vibrational Stark Effects of Nitriles I. Methods and Experimental Results J. Phys. Chem. A 2000, 104, 11853-11863 10.1021/jp002242r
-
(2000)
J. Phys. Chem. A
, vol.104
, pp. 11853-11863
-
-
Andrews, S.S.1
Boxer, S.G.2
-
30
-
-
84863492163
-
A Solvatochromic Model Calibrates Nitriles' Vibrational Frequencies to Electrostatic Fields
-
Bagchi, S.; Fried, S. D.; Boxer, S. G. A Solvatochromic Model Calibrates Nitriles' Vibrational Frequencies to Electrostatic Fields J. Am. Chem. Soc. 2012, 134, 10373-10376 10.1021/ja303895k
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 10373-10376
-
-
Bagchi, S.1
Fried, S.D.2
Boxer, S.G.3
-
31
-
-
84881071656
-
Measuring Electrostatic Fields in Both Hydrogen-Bonding and Non-Hydrogen-Bonding Environments Using Carbonyl Vibrational Probes
-
Fried, S. D.; Bagchi, S.; Boxer, S. G. Measuring Electrostatic Fields in Both Hydrogen-Bonding and Non-Hydrogen-Bonding Environments Using Carbonyl Vibrational Probes J. Am. Chem. Soc. 2013, 135, 11181-11192 10.1021/ja403917z
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 11181-11192
-
-
Fried, S.D.1
Bagchi, S.2
Boxer, S.G.3
-
32
-
-
84902106697
-
Ester Carbonyl Vibration as a Sensitive Probe of Protein Local Electric Field
-
Pazos, I. M.; Ghosh, A.; Tucker, M. J.; Gai, F. Ester Carbonyl Vibration as a Sensitive Probe of Protein Local Electric Field Angew. Chem., Int. Ed. 2014, 53, 6080-6084 10.1002/anie.201402011
-
(2014)
Angew. Chem., Int. Ed.
, vol.53
, pp. 6080-6084
-
-
Pazos, I.M.1
Ghosh, A.2
Tucker, M.J.3
Gai, F.4
-
33
-
-
84990175580
-
Experimental Determination of the Electrostatic Nature of Carbonyl Hydrogen-Bonding Interactions Using IR-NMR Correlations
-
Kashid, S. M.; Bagchi, S. Experimental Determination of the Electrostatic Nature of Carbonyl Hydrogen-Bonding Interactions Using IR-NMR Correlations J. Phys. Chem. Lett. 2014, 5, 3211-3215 10.1021/jz501613p
-
(2014)
J. Phys. Chem. Lett.
, vol.5
, pp. 3211-3215
-
-
Kashid, S.M.1
Bagchi, S.2
-
34
-
-
38949205622
-
Electrostatic Fields near the Active Site of Human Aldose Reductase: 1. New Inhibitors and Vibrational Stark Effect Measurements
-
Webb, L. J.; Boxer, S. G. Electrostatic Fields near the Active Site of Human Aldose Reductase: 1. New Inhibitors and Vibrational Stark Effect Measurements; Biochemistry 2008, 47, 1588-1598 10.1021/bi701708u
-
(2008)
Biochemistry
, vol.47
, pp. 1588-1598
-
-
Webb, L.J.1
Boxer, S.G.2
-
35
-
-
77958474269
-
Nitrile Bonds as Infrared Probes of Electrostatics in Ribonuclease S
-
Fafarman, A. T.; Boxer, S. G. Nitrile Bonds as Infrared Probes of Electrostatics in Ribonuclease S J. Phys. Chem. B 2010, 114, 13536-13544 10.1021/jp106406p
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 13536-13544
-
-
Fafarman, A.T.1
Boxer, S.G.2
-
36
-
-
84857125236
-
Quantitative, Directional Measurement of Electric Field Heterogeneity in the Active Site of Ketosteroid Isomerase
-
Fafarman, A. T.; Sigala, P. A.; Schwans, J. P.; Fenn, T. D.; Herschlag, D.; Boxer, S. G. Quantitative, Directional Measurement of Electric Field Heterogeneity in the Active Site of Ketosteroid Isomerase Proc. Natl. Acad. Sci. U. S. A. 2012, 109, E299-E308 10.1073/pnas.1111566109
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. E299-E308
-
-
Fafarman, A.T.1
Sigala, P.A.2
Schwans, J.P.3
Fenn, T.D.4
Herschlag, D.5
Boxer, S.G.6
-
37
-
-
70349303948
-
Nitrile Groups as Vibrational Probes of Biomolecular Structure and Dynamics: An Overview
-
Lindquist, B. A.; Furse, K. E.; Corcelli, S. A. Nitrile Groups as Vibrational Probes of Biomolecular Structure and Dynamics: An Overview Phys. Chem. Chem. Phys. 2009, 11, 8119-8132 10.1039/b908588b
-
(2009)
Phys. Chem. Chem. Phys.
, vol.11
, pp. 8119-8132
-
-
Lindquist, B.A.1
Furse, K.E.2
Corcelli, S.A.3
-
38
-
-
2642588311
-
Vibrational Stark Effects on Carbonyl, Nitrile, and Nitrosyl Compounds Including Heme Ligands, CO, CN, and NO, Studied with Density Functional Theory
-
Dalosto, S. D.; Vanderkooi, J. M.; Sharp, K. A. Vibrational Stark Effects on Carbonyl, Nitrile, and Nitrosyl Compounds Including Heme Ligands, CO, CN, and NO, Studied with Density Functional Theory J. Phys. Chem. B 2004, 108, 6450-6457 10.1021/jp0310697
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 6450-6457
-
-
Dalosto, S.D.1
Vanderkooi, J.M.2
Sharp, K.A.3
-
39
-
-
0037438511
-
Using Nitrile-Derivatized Amino Acids as Infrared Probes of Local Environment
-
Getahun, Z.; Huang, C.-Y.; Wang, T.; De León, B.; DeGrado, W. F.; Gai, F. Using Nitrile-Derivatized Amino Acids as Infrared Probes of Local Environment J. Am. Chem. Soc. 2003, 125, 405-411 10.1021/ja0285262
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 405-411
-
-
Getahun, Z.1
Huang, C.-Y.2
Wang, T.3
De León, B.4
DeGrado, W.F.5
Gai, F.6
-
40
-
-
77956634583
-
Decomposition of Vibrational Shifts of Nitriles into Electrostatic and Hydrogen-Bonding Effects
-
Fafarman, A. T.; Sigala, P. A.; Herschlag, D.; Boxer, S. G. Decomposition of Vibrational Shifts of Nitriles into Electrostatic and Hydrogen-Bonding Effects J. Am. Chem. Soc. 2010, 132, 12811-12813 10.1021/ja104573b
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 12811-12813
-
-
Fafarman, A.T.1
Sigala, P.A.2
Herschlag, D.3
Boxer, S.G.4
-
41
-
-
78649496901
-
Nitrile-Containing Pharmaceuticals: Efficacious Roles of the Nitrile Pharmacophore
-
Fleming, F. F.; Yao, L.; Ravikumar, P. C.; Funk, L.; Shook, B. C. Nitrile-Containing Pharmaceuticals: Efficacious Roles of the Nitrile Pharmacophore J. Med. Chem. 2010, 53, 7902-7917 10.1021/jm100762r
-
(2010)
J. Med. Chem.
, vol.53
, pp. 7902-7917
-
-
Fleming, F.F.1
Yao, L.2
Ravikumar, P.C.3
Funk, L.4
Shook, B.C.5
-
42
-
-
84859578791
-
Dynamics Measured Using a Nitrile Label with 2D IR Vibrational Echo Spectroscopy
-
Bagchi, S.; Boxer, S. G.; Fayer, M. D.; Ribonuclease, S. Dynamics Measured Using a Nitrile Label with 2D IR Vibrational Echo Spectroscopy J. Phys. Chem. B 2012, 116, 4034-4042 10.1021/jp2122856
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 4034-4042
-
-
Bagchi, S.1
Boxer, S.G.2
Fayer, M.D.3
Ribonuclease, S.4
-
43
-
-
78649944852
-
The Two-Dimensional Vibrational Echo of a Nitrile Probe of the Villin HP35 Protein
-
Urbanek, D. C.; Vorobyev, D. Y.; Serrano, A. L.; Gai, F.; Hochstrasser, R. M. The Two-Dimensional Vibrational Echo of a Nitrile Probe of the Villin HP35 Protein J. Phys. Chem. Lett. 2010, 1, 3311-3315 10.1021/jz101367d
-
(2010)
J. Phys. Chem. Lett.
, vol.1
, pp. 3311-3315
-
-
Urbanek, D.C.1
Vorobyev, D.Y.2
Serrano, A.L.3
Gai, F.4
Hochstrasser, R.M.5
-
44
-
-
84897114242
-
A Conserved Water-Mediated Hydrogen Bond Network Defines Bosutinib's Kinase Selectivity
-
Levinson, N. M.; Boxer, S. G. A Conserved Water-Mediated Hydrogen Bond Network Defines Bosutinib's Kinase Selectivity Nat. Chem. Biol. 2013, 10, 127-132 10.1038/nchembio.1404
-
(2013)
Nat. Chem. Biol.
, vol.10
, pp. 127-132
-
-
Levinson, N.M.1
Boxer, S.G.2
-
45
-
-
70349273994
-
Probing Hydrogen Bonding Environments: Solvatochromic Effects on the CN Vibration of Benzonitrile
-
Aschaffenburg, D. J.; Moog, R. S. Probing Hydrogen Bonding Environments: Solvatochromic Effects on the CN Vibration of Benzonitrile J. Phys. Chem. B 2009, 113, 12736-12743 10.1021/jp905802a
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 12736-12743
-
-
Aschaffenburg, D.J.1
Moog, R.S.2
-
46
-
-
35548982741
-
The CN Stretching Band of Aliphatic Thiocyanate Is Sensitive to Solvent Dynamics and Specific Solvation
-
Maienschein-Cline, M. G.; Londergan, C. H. The CN Stretching Band of Aliphatic Thiocyanate Is Sensitive to Solvent Dynamics and Specific Solvation J. Phys. Chem. A 2007, 111, 10020-10025 10.1021/jp0761158
-
(2007)
J. Phys. Chem. A
, vol.111
, pp. 10020-10025
-
-
Maienschein-Cline, M.G.1
Londergan, C.H.2
-
47
-
-
84962374848
-
Nitrile and Thiocyanate IR Probes: Quantum Chemistry Calculation Studies and Multivariate Least-Square Fitting Analysis
-
Choi, J.-H.; Oh, K.-I.; Lee, H.; Lee, C.; Cho, M. Nitrile and Thiocyanate IR Probes: Quantum Chemistry Calculation Studies and Multivariate Least-Square Fitting Analysis J. Chem. Phys. 2008, 128, 154504 10.1063/1.2904558
-
(2008)
J. Chem. Phys.
, vol.128
, pp. 154504
-
-
Choi, J.-H.1
Oh, K.-I.2
Lee, H.3
Lee, C.4
Cho, M.5
-
48
-
-
79955398126
-
Vibrational Solvatochromism and Electrochromism of Infrared Probe Molecules Containing C Equivalent to O, C Equivalent to N, C=O, or C-F Vibrational Chromophore
-
Choi, J.-H.; Cho, M. Vibrational Solvatochromism and Electrochromism of Infrared Probe Molecules Containing C Equivalent to O, C Equivalent to N, C=O, or C-F Vibrational Chromophore J. Chem. Phys. 2011, 134, 154513 10.1063/1.3580776
-
(2011)
J. Chem. Phys.
, vol.134
, pp. 154513
-
-
Choi, J.-H.1
Cho, M.2
-
49
-
-
48549089425
-
Nitrile Groups as Vibrational Probes: Calculations of the C≡N Infrared Absorption Line Shape of Acetonitrile in Water and Tetrahydrofuran
-
Lindquist, B. A.; Corcelli, S. A. Nitrile Groups as Vibrational Probes: Calculations of the C≡N Infrared Absorption Line Shape of Acetonitrile in Water and Tetrahydrofuran J. Phys. Chem. B 2008, 112, 6301-6303 10.1021/jp802039e
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 6301-6303
-
-
Lindquist, B.A.1
Corcelli, S.A.2
-
51
-
-
33947332292
-
Studies of the Bonding in Acetonitrile Adducts1
-
Purcell, K. F.; Drago, R. S. Studies of the Bonding in Acetonitrile Adducts1 J. Am. Chem. Soc. 1966, 88, 919-924 10.1021/ja00957a010
-
(1966)
J. Am. Chem. Soc.
, vol.88
, pp. 919-924
-
-
Purcell, K.F.1
Drago, R.S.2
-
52
-
-
77956578649
-
Probing Structural Transitions in the Intrinsically Disordered C-Terminal Domain of the Measles Virus Nucleoprotein by Vibrational Spectroscopy of Cyanylated Cysteines
-
Bischak, C. G.; Longhi, S.; Snead, D. M.; Costanzo, S.; Terrer, E.; Londergan, C. H. Probing Structural Transitions in the Intrinsically Disordered C-Terminal Domain of the Measles Virus Nucleoprotein by Vibrational Spectroscopy of Cyanylated Cysteines Biophys. J. 2010, 99, 1676-1683 10.1016/j.bpj.2010.06.060
-
(2010)
Biophys. J.
, vol.99
, pp. 1676-1683
-
-
Bischak, C.G.1
Longhi, S.2
Snead, D.M.3
Costanzo, S.4
Terrer, E.5
Londergan, C.H.6
-
53
-
-
1942425119
-
A New Method for Determining the Local Environment and Orientation of Individual Side Chains of Membrane-Binding Peptides
-
Tucker, M. J.; Getahun, Z.; Nanda, V.; DeGrado, W. F.; Gai, F. A New Method for Determining the Local Environment and Orientation of Individual Side Chains of Membrane-Binding Peptides J. Am. Chem. Soc. 2004, 126, 5078-5079 10.1021/ja032015d
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 5078-5079
-
-
Tucker, M.J.1
Getahun, Z.2
Nanda, V.3
DeGrado, W.F.4
Gai, F.5
-
54
-
-
84055193135
-
Using Infrared Spectroscopy of Cyanylated Cysteine to Map the Membrane Binding Structure and Orientation of the Hybrid Antimicrobial Peptide Cm15
-
Alfieri, K. N.; Vienneau, A. R.; Londergan, C. H. Using Infrared Spectroscopy of Cyanylated Cysteine to Map the Membrane Binding Structure and Orientation of the Hybrid Antimicrobial Peptide Cm15 Biochemistry 2011, 50, 11097-11108 10.1021/bi200903p
-
(2011)
Biochemistry
, vol.50
, pp. 11097-11108
-
-
Alfieri, K.N.1
Vienneau, A.R.2
Londergan, C.H.3
-
55
-
-
46249092554
-
Gromacs 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
-
Hess, B.; Kutzner, C.; van der Spoel, D.; Lindahl, E. Gromacs 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation J. Chem. Theory Comput. 2008, 4, 435-447 10.1021/ct700301q
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
56
-
-
2942532422
-
Development and Testing of a General Amber Force Field
-
Wang, J. M.; Wolf, R. M.; Caldwell, J. W.; Kollman, P. A.; Case, D. A. Development and Testing of a General Amber Force Field J. Comput. Chem. 2004, 25, 1157-1174 10.1002/jcc.20035
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1157-1174
-
-
Wang, J.M.1
Wolf, R.M.2
Caldwell, J.W.3
Kollman, P.A.4
Case, D.A.5
-
57
-
-
84857872128
-
Gromacs Molecule & Liquid Database
-
van der Spoel, D.; van Maaren, P. J.; Caleman, C. Gromacs Molecule & Liquid Database Bioinformatics 2012, 28, 752-753 10.1093/bioinformatics/bts020
-
(2012)
Bioinformatics
, vol.28
, pp. 752-753
-
-
Van Der Spoel, D.1
Van Maaren, P.J.2
Caleman, C.3
-
58
-
-
84855671158
-
Force Field Benchmark of Organic Liquids: Density, Enthalpy of Vaporization, Heat Capacities, Surface Tension, Isothermal Compressibility, Volumetric Expansion Coefficient, and Dielectric Constant
-
Caleman, C.; van Maaren, P. J.; Hong, M.; Hub, J. S.; Costa, L. T.; van der Spoel, D. Force Field Benchmark of Organic Liquids: Density, Enthalpy of Vaporization, Heat Capacities, Surface Tension, Isothermal Compressibility, Volumetric Expansion Coefficient, and Dielectric Constant J. Chem. Theory Comput. 2012, 8, 61-74 10.1021/ct200731v
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 61-74
-
-
Caleman, C.1
Van Maaren, P.J.2
Hong, M.3
Hub, J.S.4
Costa, L.T.5
Van Der Spoel, D.6
-
59
-
-
36148946078
-
Additive and Classical Drude Polarizable Force Fields for Linear and Cyclic Ethers
-
Vorobyov, I.; Anisimov, V. M.; Greene, S.; Venable, R. M.; Moser, A.; Pastor, R. W.; MacKerell, A. D., Jr. Additive and Classical Drude Polarizable Force Fields for Linear and Cyclic Ethers J. Chem. Theory Comput. 2007, 3, 1120-1133 10.1021/ct600350s
-
(2007)
J. Chem. Theory Comput.
, vol.3
, pp. 1120-1133
-
-
Vorobyov, I.1
Anisimov, V.M.2
Greene, S.3
Venable, R.M.4
Moser, A.5
Pastor, R.W.6
MacKerell, Jr.A.D.7
-
60
-
-
84957546582
-
Molecular Driving Forces behind the Tetrahydrofuran-Water Miscibility Gap
-
Smith, M. D.; Mostofian, B.; Petridis, L.; Cheng, X.; Smith, J. C. Molecular Driving Forces Behind the Tetrahydrofuran-Water Miscibility Gap J. Phys. Chem. B 2016, 120, 740-747 10.1021/acs.jpcb.5b09770
-
(2016)
J. Phys. Chem. B
, vol.120
, pp. 740-747
-
-
Smith, M.D.1
Mostofian, B.2
Petridis, L.3
Cheng, X.4
Smith, J.C.5
-
61
-
-
77953513118
-
Improved Side-Chain Torsion Potentials for the Amber ff99sb Protein Force Field
-
Lindorff-Larsen, K.; Piana, S.; Palmo, K.; Maragakis, P.; Klepeis, J. L.; Dror, R. O.; shaw, D. E. Improved Side-Chain Torsion Potentials for the Amber ff99sb Protein Force Field Proteins: Struct., Funct., Genet. 2010, 78, 1950-1958 10.1002/prot.22711
-
(2010)
Proteins: Struct., Funct., Genet.
, vol.78
, pp. 1950-1958
-
-
Lindorff-Larsen, K.1
Piana, S.2
Palmo, K.3
Maragakis, P.4
Klepeis, J.L.5
Dror, R.O.6
Shaw, D.E.7
-
62
-
-
0004016501
-
Comparison of Simple Potential Functions for Simulating Liquid Water
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. Comparison of Simple Potential Functions for Simulating Liquid Water J. Chem. Phys. 1983, 79, 926-935 10.1063/1.445869
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
63
-
-
33846086933
-
Canonical Sampling through Velocity Rescaling
-
Bussi, G.; Donadio, D.; Parrinello, M. Canonical Sampling through Velocity Rescaling. J. Chem. Phys. 2007, 126, 014101 10.1063/1.2408420
-
(2007)
J. Chem. Phys.
, vol.126
, pp. 014101
-
-
Bussi, G.1
Donadio, D.2
Parrinello, M.3
-
64
-
-
0019707626
-
Polymorphic Transitions in Single Crystals: A New Molecular Dynamics Method
-
Parrinello, M.; Rahman, A. Polymorphic Transitions in Single Crystals: A New Molecular Dynamics Method J. Appl. Phys. 1981, 52, 7182-7190 10.1063/1.328693
-
(1981)
J. Appl. Phys.
, vol.52
, pp. 7182-7190
-
-
Parrinello, M.1
Rahman, A.2
-
65
-
-
0000124308
-
Spectroscopic and Molecular-Dynamics Studies of Solvation of Cyanomethane and Cyanide Ions
-
Eaton, G.; Penanunez, A. S.; Symons, M. C. R.; Ferrario, M.; McDonald, I. R. Spectroscopic and Molecular-Dynamics Studies of Solvation of Cyanomethane and Cyanide Ions Faraday Discuss. Chem. Soc. 1988, 85, 237-253 10.1039/DC9888500237
-
(1988)
Faraday Discuss. Chem. Soc.
, vol.85
, pp. 237-253
-
-
Eaton, G.1
Penanunez, A.S.2
Symons, M.C.R.3
Ferrario, M.4
McDonald, I.R.5
-
66
-
-
33751386270
-
Solvent-Induced Frequency-Shifts in the Infrared-Spectrum of Acetonitrile in Organic-Solvents
-
Fawcett, W. R.; Liu, G. J.; Kessler, T. E. Solvent-Induced Frequency-Shifts in the Infrared-Spectrum of Acetonitrile in Organic-Solvents J. Phys. Chem. 1993, 97, 9293-9298 10.1021/j100139a007
-
(1993)
J. Phys. Chem.
, vol.97
, pp. 9293-9298
-
-
Fawcett, W.R.1
Liu, G.J.2
Kessler, T.E.3
-
68
-
-
0033594524
-
The Solvation of Acetonitrile
-
Reimers, J. R.; Hall, L. E. The Solvation of Acetonitrile J. Am. Chem. Soc. 1999, 121, 3730-3744 10.1021/ja983878n
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 3730-3744
-
-
Reimers, J.R.1
Hall, L.E.2
-
69
-
-
0000206030
-
Vibrational Stark Spectroscopy 0.2. Application to the CN Stretch in HCN and Acetonitrile
-
Reimers, J. R.; Zeng, J.; Hush, N. S. Vibrational Stark Spectroscopy 0.2. Application to the CN Stretch in HCN and Acetonitrile J. Phys. Chem. 1996, 100, 1498-1504 10.1021/jp9523985
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 1498-1504
-
-
Reimers, J.R.1
Zeng, J.2
Hush, N.S.3
-
70
-
-
84890957973
-
Calculations of the Electric Fields in Liquid Solutions
-
Fried, S. D.; Wang, L.-P.; Boxer, S. G.; Ren, P.; Pande, V. S. Calculations of the Electric Fields in Liquid Solutions J. Phys. Chem. B 2013, 117, 16236-16248 10.1021/jp410720y
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 16236-16248
-
-
Fried, S.D.1
Wang, L.-P.2
Boxer, S.G.3
Ren, P.4
Pande, V.S.5
-
71
-
-
84863462270
-
Solvent-Induced Infrared Frequency Shifts in Aromatic Nitriles Are Quantitatively Described by the Vibrational Stark Effect
-
Levinson, N. M.; Fried, S. D.; Boxer, S. G. Solvent-Induced Infrared Frequency Shifts in Aromatic Nitriles Are Quantitatively Described by the Vibrational Stark Effect J. Phys. Chem. B 2012, 116, 10470-10476 10.1021/jp301054e
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 10470-10476
-
-
Levinson, N.M.1
Fried, S.D.2
Boxer, S.G.3
-
72
-
-
84949604225
-
Cosolvent Effects on Solute-Solvent Hydrogen-Bond Dynamics: Ultrafast 2D-IR Investigations
-
Kashid, S. M.; Jin, G. Y.; Bagchi, S.; Kim, Y. S. Cosolvent Effects on Solute-Solvent Hydrogen-Bond Dynamics: Ultrafast 2D-IR Investigations J. Phys. Chem. B 2015, 119, 15334-15343 10.1021/acs.jpcb.5b08643
-
(2015)
J. Phys. Chem. B
, vol.119
, pp. 15334-15343
-
-
Kashid, S.M.1
Jin, G.Y.2
Bagchi, S.3
Kim, Y.S.4
-
73
-
-
84867650799
-
Solute's Perspective on How Trimethylamine Oxide, Urea, and Guanidine Hydrochloride Affect Water's Hydrogen Bonding Ability
-
Pazos, I. M.; Gai, F. Solute's Perspective on How Trimethylamine Oxide, Urea, and Guanidine Hydrochloride Affect Water's Hydrogen Bonding Ability J. Phys. Chem. B 2012, 116, 12473-12478 10.1021/jp307414s
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 12473-12478
-
-
Pazos, I.M.1
Gai, F.2
-
74
-
-
78650156868
-
Selective Incorporation of Nitrile-Based Infrared Probes into Proteins Via Cysteine Alkylation
-
Jo, H.; Culik, R. M.; Korendovych, I. V.; DeGrado, W. F.; Gai, F. Selective Incorporation of Nitrile-Based Infrared Probes into Proteins Via Cysteine Alkylation Biochemistry 2010, 49, 10354-10356 10.1021/bi101711a
-
(2010)
Biochemistry
, vol.49
, pp. 10354-10356
-
-
Jo, H.1
Culik, R.M.2
Korendovych, I.V.3
DeGrado, W.F.4
Gai, F.5
|