메뉴 건너뛰기




Volumn 3, Issue , 2013, Pages

Microbiomic signatures of psoriasis: Feasibility and methodology comparison

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

EID: 84896097133     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep02620     Document Type: Article
Times cited : (65)

References (49)
  • 2
    • 50549099726 scopus 로고    scopus 로고
    • Substantial alterations of the cutaneous bacterial biota in psoriatic lesions
    • Gao, Z., Tseng, C. H., Strober, B. E., Pei, Z.& Blaser, M. J. Substantial alterations of the cutaneous bacterial biota in psoriatic lesions. PLoS ONE 3, e2719 (2008).
    • (2008) PLoS ONE , vol.3
    • Gao, Z.1    Tseng, C.H.2    Strober, B.E.3    Pei, Z.4    Blaser, M.J.5
  • 3
    • 33747175722 scopus 로고    scopus 로고
    • Molecular analysis of fungal microbiota in samples from healthy human skin and psoriatic lesions
    • Paulino, L. C., Tseng, C. H., Strober, B. E. & Blaser, M. J. Molecular analysis of fungal microbiota in samples from healthy human skin and psoriatic lesions. Journal of clinical microbiology 44, 2933-2941 (2006).
    • (2006) Journal of Clinical Microbiology , vol.44 , pp. 2933-2941
    • Paulino, L.C.1    Tseng, C.H.2    Strober, B.E.3    Blaser, M.J.4
  • 4
    • 33845783691 scopus 로고    scopus 로고
    • Increased expression of Wnt5a in psoriatic plaques
    • Reischl, J. et al. Increased expression of Wnt5a in psoriatic plaques. The Journal of investigative dermatology 127, 163-169 (2007).
    • (2007) The Journal of Investigative Dermatology , vol.127 , pp. 163-169
    • Reischl, J.1
  • 5
    • 50549092820 scopus 로고    scopus 로고
    • Type i interferon: Potential therapeutic target for psoriasis?
    • Yao, Y. et al. Type I interferon: potential therapeutic target for psoriasis? PLoS ONE 3, e2737 (2008).
    • (2008) PLoS ONE , vol.3
    • Yao, Y.1
  • 6
    • 59149106117 scopus 로고    scopus 로고
    • Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways
    • Nair, R. P. et al. Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways. Nat Genet 41, 199-204 (2009).
    • (2009) Nat Genet , vol.41 , pp. 199-204
    • Nair, R.P.1
  • 7
    • 79251625980 scopus 로고    scopus 로고
    • Supervised classification of human microbiota
    • Knights, D., Costello, E. K. & Knight, R. Supervised classification of human microbiota. FEMS Microbiol.Rev. 35, 343-359 (2011).
    • (2011) FEMS Microbiol.Rev. , vol.35 , pp. 343-359
    • Knights, D.1    Costello, E.K.2    Knight, R.3
  • 8
    • 85027927719 scopus 로고    scopus 로고
    • Enterotypes of the human gut microbiome
    • Arumugam, M. et al. Enterotypes of the human gut microbiome. Nature 473, 174-180 (2011).
    • (2011) Nature , vol.473 , pp. 174-180
    • Arumugam, M.1
  • 9
    • 84862141704 scopus 로고    scopus 로고
    • Human gut microbiome viewed across age and geography
    • Yatsunenko, T. et al. Human gut microbiome viewed across age and geography. Nature 486, 222-227 (2012).
    • (2012) Nature , vol.486 , pp. 222-227
    • Yatsunenko, T.1
  • 12
    • 79952750288 scopus 로고    scopus 로고
    • The skin microbiome. Nature reviews
    • Grice, E. A. & Segre, J. A. The skin microbiome. Nature reviews. Microbiology 9, 244-253 (2011).
    • (2011) Microbiology , vol.9 , pp. 244-253
    • Grice, E.A.1    Segre, J.A.2
  • 13
    • 72949091232 scopus 로고    scopus 로고
    • Bacterial community variation in human body habitats across space and time
    • Costello, E. K. et al. Bacterial community variation in human body habitats across space and time. Science 326, 1694-1697 (2009).
    • (2009) Science , vol.326 , pp. 1694-1697
    • Costello, E.K.1
  • 14
    • 84862286169 scopus 로고    scopus 로고
    • A framework for human microbiome research
    • Human Microbiome Project, C. A framework for human microbiome research. Nature 486, 215-221 (2012).
    • (2012) Nature , vol.486 , pp. 215-221
    • Human Microbiome Project, C.,1
  • 15
    • 76749137632 scopus 로고    scopus 로고
    • Local causal and markov blanket induction for causal discovery and feature selection for classification. Part I: Algorithms and empirical evaluation
    • Aliferis, C. F., Statnikov, A., Tsamardinos, I., Mani, S. & Koutsoukos, X. D. Local Causal and Markov Blanket Induction for Causal Discovery and Feature Selection for Classification. Part I: Algorithms and Empirical Evaluation. Journal of Machine Learning Research 11, 171-234 (2010).
    • (2010) Journal of Machine Learning Research , vol.11 , pp. 171-234
    • Aliferis, C.F.1    Statnikov, A.2    Tsamardinos, I.3    Mani, S.4    Koutsoukos, X.D.5
  • 17
    • 78650773077 scopus 로고    scopus 로고
    • A comprehensive assessment of methods for de-novo reverse-engineering of genome-scale regulatory networks
    • Narendra, V., Lytkin, N. I., Aliferis, C. F. & Statnikov, A. A comprehensive assessment of methods for de-novo reverse-engineering of genome-scale regulatory networks. Genomics 97, 7-18 (2011).
    • (2011) Genomics , vol.97 , pp. 7-18
    • Narendra, V.1    Lytkin, N.I.2    Aliferis, C.F.3    Statnikov, A.4
  • 18
    • 79955971821 scopus 로고    scopus 로고
    • Causal graph-based analysis of genome-wide association data in rheumatoid arthritis
    • Alekseyenko, A. V. et al. Causal graph-based analysis of genome-wide association data in rheumatoid arthritis. Biology Direct 6, 25 (2011).
    • (2011) Biology Direct , vol.6 , pp. 25
    • Alekseyenko, A.V.1
  • 19
    • 76749122843 scopus 로고    scopus 로고
    • Local causal and markov blanket induction for causal discovery and feature selection for classification. Part II: Analysis and extensions
    • Aliferis, C. F., Statnikov, A., Tsamardinos, I., Mani, S. & Koutsoukos, X. D. Local Causal and Markov Blanket Induction for Causal Discovery and Feature Selection for Classification. Part II: Analysis and Extensions. Journal of Machine Learning Research 11, 235-284 (2010).
    • (2010) Journal of Machine Learning Research , vol.11 , pp. 235-284
    • Aliferis, C.F.1    Statnikov, A.2    Tsamardinos, I.3    Mani, S.4    Koutsoukos, X.D.5
  • 21
    • 84865477413 scopus 로고    scopus 로고
    • Antibiotics in early life alter the murine colonic microbiome and adiposity
    • Cho, I. et al. Antibiotics in early life alter the murine colonic microbiome and adiposity. Nature 488, 621-626 (2012).
    • (2012) Nature , vol.488 , pp. 621-626
    • Cho, I.1
  • 22
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang, Q., Garrity, G. M., Tiedje, J. M. & Cole, J. R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and environmental microbiology 73, 5261-5267 (2007).
    • (2007) Applied and Environmental Microbiology , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 24
    • 0036161259 scopus 로고    scopus 로고
    • Gene selection for cancer classification using support vector machines
    • Guyon, I., Weston, J., Barnhill, S. & Vapnik, V. Gene selection for cancer classification using support vector machines. Machine Learning 46, 389-422 (2002).
    • (2002) Machine Learning , vol.46 , pp. 389-422
    • Guyon, I.1    Weston, J.2    Barnhill, S.3    Vapnik, V.4
  • 26
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
    • Golub, T. R. et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286, 531-537 (1999).
    • (1999) Science , vol.286 , pp. 531-537
    • Golub, T.R.1
  • 27
    • 15844413351 scopus 로고    scopus 로고
    • A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis
    • Statnikov, A., Aliferis, C. F., Tsamardinos, I., Hardin, D. & Levy, S. A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis. Bioinformatics 21, 631-643 (2005).
    • (2005) Bioinformatics , vol.21 , pp. 631-643
    • Statnikov, A.1    Aliferis, C.F.2    Tsamardinos, I.3    Hardin, D.4    Levy, S.5
  • 28
    • 17644384367 scopus 로고    scopus 로고
    • Minimum redundancy feature selection from microarray gene expression data
    • Ding, C. & Peng, H. Minimum redundancy feature selection from microarray gene expression data. J Bioinform.Comput.Biol. 3, 185-205 (2005).
    • (2005) J Bioinform.Comput.Biol. , vol.3 , pp. 185-205
    • Ding, C.1    Peng, H.2
  • 29
    • 24344458137 scopus 로고    scopus 로고
    • Feature selection based on mutual information: Criteria of max-dependency, max-relevance, and min-redundancy
    • Peng, H., Long, F. & Ding, C. Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy. IEEE transactions on pattern analysis and machine intelligence 27, 1226-1238 (2005).
    • (2005) IEEE Transactions on Pattern Analysis and Machine Intelligence , vol.27 , pp. 1226-1238
    • Peng, H.1    Long, F.2    Ding, C.3
  • 30
    • 30644464444 scopus 로고    scopus 로고
    • Gene selection and classification of microarray data using random forest
    • Diaz-Uriarte, R. & Alvarez de Andres, S. Gene selection and classification of microarray data using random forest. BMC Bioinformatics 7, 3 (2006).
    • (2006) BMC Bioinformatics , vol.7 , pp. 3
    • Diaz-Uriarte, R.1    Alvarez De Andres, S.2
  • 32
    • 0037460957 scopus 로고    scopus 로고
    • PCA disjoint models for multiclass cancer analysis using gene expression data
    • Bicciato, S., Luchini, A. & Di, B. C. PCA disjoint models for multiclass cancer analysis using gene expression data. Bioinformatics 19, 571-578 (2003).
    • (2003) Bioinformatics , vol.19 , pp. 571-578
    • Bicciato, S.1    Luchini, A.2    Di, B.C.3
  • 34
    • 33847292771 scopus 로고    scopus 로고
    • Clustering threshold gradient descent regularization: With applications to microarray studies
    • Ma, S. & Huang, J. Clustering threshold gradient descent regularization: with applications to microarray studies. Bioinformatics 23, 466-472 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 466-472
    • Ma, S.1    Huang, J.2
  • 36
    • 84923857557 scopus 로고    scopus 로고
    • A comprehensive evaluation of multicategory classification methods for microbiomic data
    • Statnikov, A. et al. A comprehensive evaluation of multicategory classification methods for microbiomic data. Microbiome 1, 11 (2013).
    • (2013) Microbiome , vol.1 , pp. 11
    • Statnikov, A.1
  • 37
    • 27144489164 scopus 로고    scopus 로고
    • A tutorial on support vector machines for pattern recognition
    • Burges, C. J. C. A tutorial on support vector machines for pattern recognition. Data Mining and Knowledge Discovery 2, 121-167 (1998).
    • (1998) Data Mining and Knowledge Discovery , vol.2 , pp. 121-167
    • Burges, C.J.C.1
  • 39
    • 29144499905 scopus 로고    scopus 로고
    • Working set selection using second order information for training support vector machines
    • Fan, R. E., Chen, P. H. & Lin, C. J. Working set selection using second order information for training support vector machines. Journal of Machine Learning Research 6, 1918 (2005).
    • (2005) Journal of Machine Learning Research , vol.6 , pp. 1918
    • Fan, R.E.1    Chen, P.H.2    Lin, C.J.3
  • 40
    • 1342330535 scopus 로고    scopus 로고
    • Is cross-validation valid for small-sample microarray classification?
    • Braga-Neto, U. M. & Dougherty, E. R. Is cross-validation valid for small-sample microarray classification? Bioinformatics 20, 374-380 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 374-380
    • Braga-Neto, U.M.1    Dougherty, E.R.2
  • 41
    • 22544475586 scopus 로고    scopus 로고
    • GEMS: A system for automated cancer diagnosis and biomarker discovery from microarray gene expression data
    • Statnikov, A., Tsamardinos, I., Dosbayev, Y. & Aliferis, C. F. GEMS: a system for automated cancer diagnosis and biomarker discovery from microarray gene expression data. Int.J.Med.Inform. 74, 491-503 (2005).
    • (2005) Int.J.Med.Inform. , vol.74 , pp. 491-503
    • Statnikov, A.1    Tsamardinos, I.2    Dosbayev, Y.3    Aliferis, C.F.4
  • 43
    • 0030069896 scopus 로고    scopus 로고
    • Multivariable prognostic models: Issues in developing models, evaluating assumptions and adequacy, and measuring and reducing errors
    • Harrell, F. E., Jr., Lee, K. L. &Mark, D. B.Multivariable prognostic models: issues in developing models, evaluating assumptions and adequacy, and measuring and reducing errors. Stat.Med 15, 361-387 (1996).
    • (1996) Stat.Med , vol.15 , pp. 361-387
    • Harrell, F.E.1    Lee, K.L.2    Mark, D.B.3
  • 46
    • 62849087796 scopus 로고    scopus 로고
    • Factors influencing the statistical power of complex data analysis protocols for molecular signature development from microarray data
    • Aliferis, C. F. et al. Factors Influencing the Statistical Power of Complex Data Analysis Protocols for Molecular Signature Development from Microarray Data. PLoS ONE 4, e4922 (2009).
    • (2009) PLoS ONE , vol.4
    • Aliferis, C.F.1
  • 47
  • 49
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini, Y. & Yekutieli, D. The control of the false discovery rate in multiple testing under dependency. Ann.Statist 29, 1165-1188 (2001).
    • (2001) Ann.Statist , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.