Metabolic reconstruction for metagenomic data and its application to the human microbiome

PLoS Computational Biology

Volumn 8, Issue 6, 2012, Pages

  Abubucker, Sahar ^a   Segata, Nicola ^b   Goll, Johannes ^c   Schubert, Alyxandria M ^d   Izard, Jacques ^e,f   Cantarel, Brandi L ^g   Rodriguez Mueller, Beltran ^f   Zucker, Jeremy ^h   Thiagarajan, Mathangi ^c   Henrissat, Bernard ⁱ   White, Owen ^g   Kelley, Scott T ^j   Methé, Barbara ^c   Schloss, Patrick D ^d   Gevers, Dirk ^h   Mitreva, Makedonka ^a   Huttenhower, Curtis ^b,h  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

^c J CRAIG VENTER INSTITUTE   (United States)

^d UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^e FORSYTH INSTITUTE   (United States)

^f HARVARD SCHOOL OF DENTAL MEDICINE   (United States)

^g UNIVERSITY OF MARYLAND SCHOOL OF MEDICINE   (United States)

^h BROAD INSTITUTE OF MIT AND HARVARD   (United States)

ⁱ Centre National de la Recherche Scientifique   (France)

^j SAN DIEGO STATE UNIVERSITY   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ECOLOGY; GENES; MICROORGANISMS;

BIOCHEMICAL ACTIVITY; DATA APPLICATION; FUNCTIONAL MODULES; HUMAN MICROBIOME; ITS APPLICATIONS; METABOLIC PATHWAYS; METABOLIC RECONSTRUCTION; METAGENOMES; METAGENOMICS; MICROBIAL COMMUNITIES;

METABOLISM;

AMINO ACID TRANSPORT; ARTICLE; COPY NUMBER VARIATION; ECOLOGICAL NICHE; GENE SEQUENCE; GENETIC DATABASE; GLYCOSAMINOGLYCAN METABOLISM; HIGH THROUGHPUT SEQUENCING; INTESTINE FLORA; INTESTINE MUCOSA; METAGENOMICS; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; MICROBIAL GENETICS; MICROBIAL METABOLISM; MICROBIOME; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; PH MEASUREMENT; PHENOTYPIC VARIATION; PHOSPHATE TRANSPORT; POPULATION ABUNDANCE; SEQUENCE ALIGNMENT; VALIDATION PROCESS; BIOLOGY; DIGESTIVE SYSTEM; FEMALE; GENETICS; HUMAN; METABOLISM; METABOLOME; METAGENOME; MICROBIOLOGY; PH; VAGINA;

GLYCOSAMINOGLYCAN;

COMPUTATIONAL BIOLOGY; DIGESTIVE SYSTEM; FEMALE; GENETICS, MICROBIAL; GLYCOSAMINOGLYCANS; HUMANS; HYDROGEN-ION CONCENTRATION; METABOLIC NETWORKS AND PATHWAYS; METABOLOME; METAGENOME; MULTIGENE FAMILY; VAGINA;

EID: 84864037467     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1002358     Document Type: Article

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