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Volumn 9, Issue 9, 2015, Pages 1979-1990

A phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, geography and ethnicities

Author keywords

[No Author keywords available]

Indexed keywords

CANONICAL ANALYSIS; ETHNICITY; FATTY ACID; FECES; HEALTH MONITORING; HEALTH RISK; LIFESTYLE; PHYLOGENETICS; YOUNG POPULATION;

EID: 84939571535     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2015.11     Document Type: Article
Times cited : (385)

References (62)
  • 1
    • 0042815050 scopus 로고    scopus 로고
    • Canonical analysis of principal coordinates: A useful method of constrained ordination for ecology
    • Anderson MJ, Willis TJ. (2003). Canonical analysis of principal coordinates: a useful method of constrained ordination for ecology. Ecology 84: 511-525.
    • (2003) Ecology , vol.84 , pp. 511-525
    • Anderson, M.J.1    Willis, T.J.2
  • 4
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini Y, Yekutieli D. (2001). The control of the false discovery rate in multiple testing under dependency. Ann Stat 29: 1165-1188.
    • (2001) Ann Stat , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 7
    • 84858376593 scopus 로고    scopus 로고
    • The impact of the gut microbiota on human health: An integrative view
    • Clemente JC, Ursell LK, Parfrey LW, Knight R. (2012). The impact of the gut microbiota on human health: an integrative view. Cell 148: 1258-1270.
    • (2012) Cell , vol.148 , pp. 1258-1270
    • Clemente, J.C.1    Ursell, L.K.2    Parfrey, L.W.3    Knight, R.4
  • 8
    • 84861992014 scopus 로고    scopus 로고
    • The application of ecological theory toward an understanding of the human microbiome
    • Costello EK, Stagaman K, Dethlefsen L, Bohannan BJM, Relman DA. (2012). The application of ecological theory toward an understanding of the human microbiome. Science 336: 1255-1262.
    • (2012) Science , vol.336 , pp. 1255-1262
    • Costello, E.K.1    Stagaman, K.2    Dethlefsen, L.3    Bohannan, B.J.M.4    Relman, D.A.5
  • 10
    • 77957075815 scopus 로고    scopus 로고
    • Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
    • De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, Massart S et al. (2010). Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci USA 107: 14691-14696.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 14691-14696
    • De Filippo, C.1    Cavalieri, D.2    Di Paola, M.3    Ramazzotti, M.4    Poullet, J.B.5    Massart, S.6
  • 11
    • 79952756960 scopus 로고    scopus 로고
    • Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
    • Dethlefsen L, Relman DA. (2011). Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc Natl Acad Sci USA 108: 4554-4561.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 4554-4561
    • Dethlefsen, L.1    Relman, D.A.2
  • 12
    • 0027137131 scopus 로고
    • Phascolarctobacterium faecium gen nov, spec. Nov., a novel taxon of the Sporomusa group of Bacteria
    • Dot TD, Osawa R, Stackebrandt E. (1993). Phascolarctobacterium faecium gen. Nov, spec. Nov., a novel taxon of the Sporomusa group of Bacteria. Syst Appl Microbiol 16: 380-384.
    • (1993) Syst Appl Microbiol , vol.16 , pp. 380-384
    • Dot, T.D.1    Osawa, R.2    Stackebrandt, E.3
  • 13
    • 70349408423 scopus 로고    scopus 로고
    • High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol
    • Dridi B, Henry M, El Khechine A, Raoult D, Drancourt M. (2009). High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol. PLoS One 4: e7063.
    • (2009) PLoS One , vol.4 , pp. E7063
    • Dridi, B.1    Henry, M.2    El Khechine, A.3    Raoult, D.4    Drancourt, M.5
  • 14
    • 0036739483 scopus 로고    scopus 로고
    • Roseburia intestinalis sp nov., a novel saccharolytic, butyrate-producing bacterium from human faeces
    • Duncan SH, Hold GL, Barcenilla A, Stewart CS, Flint HJ. (2002). Roseburia intestinalis sp. Nov., a novel saccharolytic, butyrate-producing bacterium from human faeces. Int J Syst Evol Microbiol 52: 1615-1620.
    • (2002) J Syst Evol Microbiol , vol.52 , pp. 1615-1620
    • Duncan, S.H.1    Hold, G.L.2    Barcenilla, A.3    Stewart, C.S.4    Flint, H.J.5
  • 15
    • 0036866628 scopus 로고    scopus 로고
    • Growth requirements and fermentation products of Fusobacterium prausnitzii, and a proposal to reclassify it as Faecalibacterium prausnitzii gen nov., comb. Nov
    • Duncan SH, Hold GL, Harmsen HJM, Stewart CS, Flint HJ. (2002). Growth requirements and fermentation products of Fusobacterium prausnitzii, and a proposal to reclassify it as Faecalibacterium prausnitzii gen. Nov., comb. Nov. Int J Syst Evol Microbiol 52: 2141-2146.
    • (2002) J Syst Evol Microbiol , vol.52 , pp. 2141-2146
    • Duncan, S.H.1    Hold, G.L.2    Harmsen, H.J.M.3    Stewart, C.S.4    Flint, H.J.5
  • 18
    • 84875369840 scopus 로고    scopus 로고
    • An opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice
    • Fei N, Zhao LP. (2013). An opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice. ISME J 7: 880-884.
    • (2013) ISME J , vol.7 , pp. 880-884
    • Fei, N.1    Zhao, L.P.2
  • 20
    • 79251584066 scopus 로고    scopus 로고
    • Bifidobacteria can protect from enteropathogenic infection through production of acetate
    • Fukuda S, Toh H, Hase K, Oshima K, Nakanishi Y, Yoshimura K et al. (2011). Bifidobacteria can protect from enteropathogenic infection through production of acetate. Nature 469: 543-547.
    • (2011) Nature , vol.469 , pp. 543-547
    • Fukuda, S.1    Toh, H.2    Hase, K.3    Oshima, K.4    Nakanishi, Y.5    Yoshimura, K.6
  • 22
    • 67650021209 scopus 로고    scopus 로고
    • Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
    • Hamady M, Knight R. (2009). Microbial community profiling for human microbiome projects: tools, techniques, and challenges. Genome Res 19: 1141-1152.
    • (2009) Genome Res , vol.19 , pp. 1141-1152
    • Hamady, M.1    Knight, R.2
  • 23
    • 84879148662 scopus 로고    scopus 로고
    • Archaea and fungi of the human gut microbiome: Correlations with diet and bacterial residents
    • Hoffmann C, Dollive S, Grunberg S, Chen J, Li HZ, Wu GD et al. (2013). Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents. PLoS One 8: e66019.
    • (2013) PLoS One , vol.8 , pp. E66019
    • Hoffmann, C.1    Dollive, S.2    Grunberg, S.3    Chen, J.4    Li, H.Z.5    Wu, G.D.6
  • 25
    • 84862173705 scopus 로고    scopus 로고
    • A core human microbiome as viewed through 16S rRNA sequence clusters
    • Huse SM, Ye YZ, Zhou YJ, Fodor AA. (2012). A core human microbiome as viewed through 16S rRNA sequence clusters. PLoS One 7: e34242.
    • (2012) PLoS One , vol.7 , pp. E34242
    • Huse, S.M.1    Ye, Y.Z.2    Zhou, Y.J.3    Fodor, A.A.4
  • 27
    • 84878579044 scopus 로고    scopus 로고
    • The gut microbiota suppresses insulin-mediated fat accumulation via the short-chain fatty acid receptor GPR43
    • Kimura I, Ozawa K, Inoue D, Imamura T, Kimura K, Maeda T et al. (2013). The gut microbiota suppresses insulin-mediated fat accumulation via the short-chain fatty acid receptor GPR43. Nat Commun 4: 1829.
    • (2013) Nat Commun , vol.4 , pp. 1829
    • Kimura, I.1    Ozawa, K.2    Inoue, D.3    Imamura, T.4    Kimura, K.5    Maeda, T.6
  • 28
  • 29
    • 79953028506 scopus 로고    scopus 로고
    • Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea
    • Lee OO, Wang Y, Yang JK, Lafi FF, Al-Suwailem A, Qian PY. (2011). Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea. ISME J 5: 650-664.
    • (2011) ISME J , vol.5 , pp. 650-664
    • Lee, O.O.1    Wang, Y.2    Yang, J.K.3    Lafi, F.F.4    Al-Suwailem, A.5    Qian, P.Y.6
  • 30
    • 32944466887 scopus 로고    scopus 로고
    • Ecological and evolutionary forces shaping microbial diversity in the human intestine
    • Ley RE, Peterson DA, Gordon JI. (2006). Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124: 837-848.
    • (2006) Cell , vol.124 , pp. 837-848
    • Ley, R.E.1    Peterson, D.A.2    Gordon, J.I.3
  • 32
    • 84861001724 scopus 로고    scopus 로고
    • Inflammatory bowel diseases phenotype, C.difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition
    • Li E, HammCM, Gulati AS, Sartor RB, Chen HY,Wu X et al. (2012). Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition. PLoS One 7: e26284.
    • (2012) PLoS One , vol.7 , pp. E26284
    • Li, E.1    Hamm, C.M.2    Gulati, A.S.3    Sartor, R.B.4    Chen, H.Y.5    Wu, X.6
  • 33
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R. (2005). UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 34
    • 84867161176 scopus 로고    scopus 로고
    • Identifying genomic and metabolic features that can underline early successional and opportunistic lifestyles of human gut symbionts
    • Lozupone C, Faust K, Raes J, Faith JJ, Frank DN, Zaneveld J et al. (2012). Identifying genomic and metabolic features that can underline early successional and opportunistic lifestyles of human gut symbionts. Genome Res 22: 1974-1984.
    • (2012) Genome Res , vol.22 , pp. 1974-1984
    • Lozupone, C.1    Faust, K.2    Raes, J.3    Faith, J.J.4    Frank, D.N.5    Zaneveld, J.6
  • 35
    • 33947269742 scopus 로고    scopus 로고
    • Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities
    • Lozupone CA, Hamady M, Kelley ST, Knight R. (2007). Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Appl Environ Microbiol 73: 1576-1585.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 1576-1585
    • Lozupone, C.A.1    Hamady, M.2    Kelley, S.T.3    Knight, R.4
  • 37
    • 70350666634 scopus 로고    scopus 로고
    • Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43
    • Maslowski KM, Vieira AT, Ng A, Kranich J, Sierro F, Yu D et al. (2009). Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43. Nature 461: 1282-1286.
    • (2009) Nature , vol.461 , pp. 1282-1286
    • Maslowski, K.M.1    Vieira, A.T.2    Ng, A.3    Kranich, J.4    Sierro, F.5    Yu, D.6
  • 38
    • 0035133496 scopus 로고    scopus 로고
    • Fitting multivariate models to community data: A comment on distancebased redundancy analysis
    • McArdle BH, Anderson MJ. (2001). Fitting multivariate models to community data: a comment on distancebased redundancy analysis. Ecology 82: 290-297.
    • (2001) Ecology , vol.82 , pp. 290-297
    • McArdle, B.H.1    Anderson, M.J.2
  • 39
    • 0027463032 scopus 로고
    • Butyrate production from dietary fibre and protection against large bowel cancer in a rat model
    • McIntyre A, Gibson PR, Young GP. (1993). Butyrate production from dietary fibre and protection against large bowel cancer in a rat model. Gut 34: 386-391.
    • (1993) Gut , vol.34 , pp. 386-391
    • McIntyre, A.1    Gibson, P.R.2    Young, G.P.3
  • 40
    • 79960904343 scopus 로고    scopus 로고
    • Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing
    • Nam YD, Jung MJ, Roh SW, Kim MS, Bae JW. (2011). Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing. PLoS One 6: e22109.
    • (2011) PLoS One , vol.6 , pp. E22109
    • Nam, Y.D.1    Jung, M.J.2    Roh, S.W.3    Kim, M.S.4    Bae, J.W.5
  • 42
    • 84859711470 scopus 로고    scopus 로고
    • Blautia stercoris sp nov., isolated from human faeces
    • Park SK, Kim MS, Roh SW, Bae JW. (2012). Blautia stercoris sp. Nov., isolated from human faeces. Int J Syst Evol Microbiol 62: 776-779.
    • (2012) J Syst Evol Microbiol , vol.62 , pp. 776-779
    • Park, S.K.1    Kim, M.S.2    Roh, S.W.3    Bae, J.W.4
  • 43
    • 69549114504 scopus 로고    scopus 로고
    • Butyrate enhances the intestinal barrier by facilitating tight junction assembly via activation of AMPactivated protein kinase in Caco-2 cell monolayers
    • Peng LY, Li ZR, Green RS, Holzman IR, Lin J. (2009). Butyrate enhances the intestinal barrier by facilitating tight junction assembly via activation of AMPactivated protein kinase in Caco-2 cell monolayers. J Nutr 139: 1619-1625.
    • (2009) J Nutr , vol.139 , pp. 1619-1625
    • Peng, L.Y.1    Li, Z.R.2    Green, R.S.3    Holzman, I.R.4    Lin, J.5
  • 44
    • 84939563133 scopus 로고    scopus 로고
    • Ethnicity and ethnic conflict
    • In: Mitchell E (ed). 9th edn. Wadsworth, Cengage Learning: Belmont, California, USA, p 389
    • Peoples J, Bailey G. (2011). Ethnicity and ethnic conflict. In: Mitchell E (ed). Humanity: An Introduction to Cultural Anthropology, 9th edn. Wadsworth, Cengage Learning: Belmont, California, USA, p 389.
    • (2011) Humanity: An Introduction to Cultural Anthropology
    • Peoples, J.1    Bailey, G.2
  • 45
    • 0021801223 scopus 로고
    • Carbohydrate fermentation in the human colon and its relation to acetate concentrations in venous blood
    • Pomare EW, Branch WJ, Cummings JH. (1985). Carbohydrate fermentation in the human colon and its relation to acetate concentrations in venous blood. J Clin Invest 75: 1448-1454.
    • (1985) J Clin Invest , vol.75 , pp. 1448-1454
    • Pomare, E.W.1    Branch, W.J.2    Cummings, J.H.3
  • 46
    • 84867074831 scopus 로고    scopus 로고
    • A metagenome-wide association study of gut microbiota in type 2 diabetes
    • Qin J, Li Y, Cai Z, Li S, Zhu J, Zhang F et al. (2012). A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490: 55-60.
    • (2012) Nature , vol.490 , pp. 55-60
    • Qin, J.1    Li, Y.2    Cai, Z.3    Li, S.4    Zhu, J.5    Zhang, F.6
  • 47
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Qin JJ, Li RQ, Raes J, Arumugam M, Burgdorf KS, Manichanh C et al. (2010). A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464: 59-65.
    • (2010) Nature , vol.464 , pp. 59-65
    • Qin, J.J.1    Li, R.Q.2    Raes, J.3    Arumugam, M.4    Burgdorf, K.S.5    Manichanh, C.6
  • 48
    • 49749126765 scopus 로고    scopus 로고
    • Dietary fibre and the gut microbiota
    • Scott KP, Duncan SH, Flint HJ. (2008). Dietary fibre and the gut microbiota. Nutr Bull 33: 201-211.
    • (2008) Nutr Bull , vol.33 , pp. 201-211
    • Scott, K.P.1    Duncan, S.H.2    Flint, H.J.3
  • 49
    • 0033863238 scopus 로고    scopus 로고
    • Butyrate inhibits inflammatory responses through NFkB inhibition: Implications for Crohn's disease
    • Segain JP, de la Bletiere DR, Bourreille A, Leray V, Gervois N, Rosales C et al. (2000). Butyrate inhibits inflammatory responses through NFkB inhibition: implications for Crohn's disease. Gut 47: 397-403.
    • (2000) Gut , vol.47 , pp. 397-403
    • Segain, J.P.1    De La Bletiere, D.R.2    Bourreille, A.3    Leray, V.4    Gervois, N.5    Rosales, C.6
  • 50
    • 0024529810 scopus 로고
    • Proposal to restrict the genus Bacteroides (Castellani and Chalmers) to Bacteroides fragilis and closely related species
    • Shah HN, Collins MD. (1989). Proposal to restrict the genus Bacteroides (Castellani and Chalmers) to Bacteroides fragilis and closely related species. Int J Syst Bacteriol 39: 85-87.
    • (1989) J Syst Bacteriol , vol.39 , pp. 85-87
    • Shah, H.N.1    Collins, M.D.2
  • 51
    • 0025344613 scopus 로고
    • Prevotella, a new genus to include Bacteroides melaninogenicus and related species formerly classified in the genus Bacteroides
    • Shah HN, Collins DM. (1990). Prevotella, a new genus to include Bacteroides melaninogenicus and related species formerly classified in the genus Bacteroides. Int J Syst Bacteriol 40: 205-208.
    • (1990) J Syst Bacteriol , vol.40 , pp. 205-208
    • Shah, H.N.1    Collins, D.M.2
  • 52
    • 55949124035 scopus 로고    scopus 로고
    • Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
    • Sokol H, Pigneur B, Watterlot L, Lakhdari O, Bermudez-Humaran LG, Gratadoux JJ et al. (2008). Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc Natl Acad Sci USA 105: 16731-16736.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 16731-16736
    • Sokol, H.1    Pigneur, B.2    Watterlot, L.3    Lakhdari, O.4    Bermudez-Humaran, L.G.5    Gratadoux, J.J.6
  • 54
    • 0036199905 scopus 로고    scopus 로고
    • Reclassification of Eubacterium formicigenerans Holdeman and Moore 1974 as Dorea formicigenerans gen nov., comb. Nov., and description of Dorea longicatena sp. Nov., isolated from human faeces
    • Taras D, Simmering R, Collins MD, Lawson PA, Blaut M. (2002). Reclassification of Eubacterium formicigenerans Holdeman and Moore 1974 as Dorea formicigenerans gen. Nov., comb. Nov., and description of Dorea longicatena sp. Nov., isolated from human faeces. Int J Syst Evol Microbiol 52: 423-428.
    • (2002) J Syst Evol Microbiol , vol.52 , pp. 423-428
    • Taras, D.1    Simmering, R.2    Collins, M.D.3    Lawson, P.A.4    Blaut, M.5
  • 57
    • 84855923925 scopus 로고    scopus 로고
    • Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers
    • Wang TT, Cai GX, Qiu YP, Fei N, Zhang MH, Pang XYet al. (2012). Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers. ISME J 6: 320-329.
    • (2012) ISME J , vol.6 , pp. 320-329
    • Wang, T.T.1    Cai, G.X.2    Qiu, Y.P.3    Fei, N.4    Zhang, M.H.5    Pang, X.Y.6
  • 59
    • 67650491767 scopus 로고    scopus 로고
    • Isolation and preliminary probiotic selection of lactobacilli from koumiss in Inner Mongolia
    • Wu R, Wang LP, Wang JC, Li HP, Menghe B, Wu JR et al. (2009). Isolation and preliminary probiotic selection of lactobacilli from koumiss in Inner Mongolia. J Basic Microbiol 49: 318-326.
    • (2009) J Basic Microbiol , vol.49 , pp. 318-326
    • Wu, R.1    Wang, L.P.2    Wang, J.C.3    Li, H.P.4    Menghe, B.5    Wu, J.R.6
  • 62
    • 84865055757 scopus 로고    scopus 로고
    • Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome
    • Zupancic ML, Cantarel BL, Liu Z, Drabek EF, Ryan KA, Cirimotich S et al. (2012). Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome. PLoS One 7: e43052.
    • (2012) PLoS One , vol.7 , pp. E43052
    • Zupancic, M.L.1    Cantarel, B.L.2    Liu, Z.3    Drabek, E.F.4    Ryan, K.A.5    Cirimotich, S.6


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