-
2
-
-
70350223641
-
Classification and nomenclature of endogenous retroviral sequences (ERVs): problems and recommendations
-
Blomberg J., Benachenhou F., Blikstad V., Sperber G., Mayer J. Classification and nomenclature of endogenous retroviral sequences (ERVs): problems and recommendations. Gene 2009, 448:115-123.
-
(2009)
Gene
, vol.448
, pp. 115-123
-
-
Blomberg, J.1
Benachenhou, F.2
Blikstad, V.3
Sperber, G.4
Mayer, J.5
-
3
-
-
71149118599
-
Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees
-
Llorens C., Munoz-Pomer A., Bernad L., Botella H., Moya A. Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees. Biol Direct 2009, 4:41.
-
(2009)
Biol Direct
, vol.4
, pp. 41
-
-
Llorens, C.1
Munoz-Pomer, A.2
Bernad, L.3
Botella, H.4
Moya, A.5
-
4
-
-
0032976398
-
The age and evolution of non-LTR retrotransposable elements
-
Malik H.S., Burke W.D., Eickbush T.H. The age and evolution of non-LTR retrotransposable elements. Mol Biol Evol 1999, 16:793-805.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 793-805
-
-
Malik, H.S.1
Burke, W.D.2
Eickbush, T.H.3
-
5
-
-
43049094016
-
The diversity of retrotransposons and the properties of their reverse transcriptases
-
Eickbush T.H., Jamburuthugoda V.K. The diversity of retrotransposons and the properties of their reverse transcriptases. Virus Res 2008, 134:221-234.
-
(2008)
Virus Res
, vol.134
, pp. 221-234
-
-
Eickbush, T.H.1
Jamburuthugoda, V.K.2
-
6
-
-
75649096724
-
MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes
-
Rho M., Tang H. MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes. Nucleic Acids Res 2009, 37:e143.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. e143
-
-
Rho, M.1
Tang, H.2
-
7
-
-
0002725414
-
Reverse transcriptase and evolution
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, A.M. Skalka, S. Goff (Eds.)
-
Coffin J. Reverse transcriptase and evolution. Reverse Transcriptase 1993, 445-479. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York. A.M. Skalka, S. Goff (Eds.).
-
(1993)
Reverse Transcriptase
, pp. 445-479
-
-
Coffin, J.1
-
8
-
-
0034618653
-
Infection by porcine endogenous retrovirus after islet xenotransplantation in SCID mice
-
van der Laan L.J., Lockey C., Griffeth B.C., Frasier F.S., Wilson C.A., Onions D.E., Hering B.J., Long Z., Otto E., Torbett B.E., Salomon D.R. Infection by porcine endogenous retrovirus after islet xenotransplantation in SCID mice. Nature 2000, 407:90-94.
-
(2000)
Nature
, vol.407
, pp. 90-94
-
-
van der Laan, L.J.1
Lockey, C.2
Griffeth, B.C.3
Frasier, F.S.4
Wilson, C.A.5
Onions, D.E.6
Hering, B.J.7
Long, Z.8
Otto, E.9
Torbett, B.E.10
Salomon, D.R.11
-
9
-
-
79959856060
-
Recombinant origin of the retrovirus XMRV
-
Paprotka T., Delviks-Frankenberry K.A., Cingoz O., Martinez A., Kung H.J., Tepper C.G., Hu W.S., Fivash M.J., Coffin J.M., Pathak V.K. Recombinant origin of the retrovirus XMRV. Science 2011, 333:97-101.
-
(2011)
Science
, vol.333
, pp. 97-101
-
-
Paprotka, T.1
Delviks-Frankenberry, K.A.2
Cingoz, O.3
Martinez, A.4
Kung, H.J.5
Tepper, C.G.6
Hu, W.S.7
Fivash, M.J.8
Coffin, J.M.9
Pathak, V.K.10
-
10
-
-
84870294763
-
Resurrection of endogenous retroviruses in antibody-deficient mice
-
Young G.R., Eksmond U., Salcedo R., Alexopoulou L., Stoye J.P., Kassiotis G. Resurrection of endogenous retroviruses in antibody-deficient mice. Nature 2012, 491:774-778.
-
(2012)
Nature
, vol.491
, pp. 774-778
-
-
Young, G.R.1
Eksmond, U.2
Salcedo, R.3
Alexopoulou, L.4
Stoye, J.P.5
Kassiotis, G.6
-
11
-
-
84896829307
-
Contamination of live attenuated vaccines with an infectious feline endogenous retrovirus (RD-114 virus)
-
Yoshikawa R., Shimode S., Sakaguchi S., Miyazawa T. Contamination of live attenuated vaccines with an infectious feline endogenous retrovirus (RD-114 virus). Arch Virol 2014, 159:399-404.
-
(2014)
Arch Virol
, vol.159
, pp. 399-404
-
-
Yoshikawa, R.1
Shimode, S.2
Sakaguchi, S.3
Miyazawa, T.4
-
12
-
-
0027992609
-
An env-like protein encoded by a Drosophila retroelement: evidence that gypsy is an infectious retrovirus
-
Song S.U., Gerasimova T., Kurkulos M., Boeke J.D., Corces V.G. An env-like protein encoded by a Drosophila retroelement: evidence that gypsy is an infectious retrovirus. Genes Dev 1994, 8:2046-2057.
-
(1994)
Genes Dev
, vol.8
, pp. 2046-2057
-
-
Song, S.U.1
Gerasimova, T.2
Kurkulos, M.3
Boeke, J.D.4
Corces, V.G.5
-
13
-
-
62349104354
-
Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes
-
Bartolome C., Bello X., Maside X. Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes. Genome Biol 2009, 10:R22.
-
(2009)
Genome Biol
, vol.10
, pp. R22
-
-
Bartolome, C.1
Bello, X.2
Maside, X.3
-
14
-
-
84899853495
-
Widespread and frequent horizontal transfers of transposable elements in plants
-
El Baidouri M., Carpentier M.C., Cooke R., Gao D., Lasserre E., Llauro C., Mirouze M., Picault N., Jackson S.A., Panaud O. Widespread and frequent horizontal transfers of transposable elements in plants. Genome Res 2014, 24:831-838.
-
(2014)
Genome Res
, vol.24
, pp. 831-838
-
-
El Baidouri, M.1
Carpentier, M.C.2
Cooke, R.3
Gao, D.4
Lasserre, E.5
Llauro, C.6
Mirouze, M.7
Picault, N.8
Jackson, S.A.9
Panaud, O.10
-
15
-
-
77955658052
-
Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution
-
Schaack S., Gilbert C., Feschotte C. Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution. Trends Ecol Evol 2010, 25:537-546.
-
(2010)
Trends Ecol Evol
, vol.25
, pp. 537-546
-
-
Schaack, S.1
Gilbert, C.2
Feschotte, C.3
-
16
-
-
84872587448
-
Widespread horizontal transfer of retrotransposons
-
Walsh A.M., Kortschak R.D., Gardner M.G., Bertozzi T., Adelson D.L. Widespread horizontal transfer of retrotransposons. Proc Natl Acad Sci U S A 2013, 110:1012-1016.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 1012-1016
-
-
Walsh, A.M.1
Kortschak, R.D.2
Gardner, M.G.3
Bertozzi, T.4
Adelson, D.L.5
-
17
-
-
84890276747
-
Broad-scale phylogenomics provides insights into retrovirus-host evolution
-
Hayward A., Grabherr M., Jern P. Broad-scale phylogenomics provides insights into retrovirus-host evolution. Proc Natl Acad Sci U S A 2013, 110:20146-20151.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 20146-20151
-
-
Hayward, A.1
Grabherr, M.2
Jern, P.3
-
18
-
-
84920982305
-
Pan-vertebrate comparative genomics unmasks retrovirus macroevolution
-
Hayward A., Cornwallis C.K., Jern P. Pan-vertebrate comparative genomics unmasks retrovirus macroevolution. Proc Natl Acad Sci U S A 2015, 112:464-469.
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, pp. 464-469
-
-
Hayward, A.1
Cornwallis, C.K.2
Jern, P.3
-
19
-
-
84948954081
-
Cross-species transmission and differential fate of an endogenous retrovirus in three mammal lineages
-
Zhuo X., Feschotte C. Cross-species transmission and differential fate of an endogenous retrovirus in three mammal lineages. PLoS Pathog 2015, 11:e1005279.
-
(2015)
PLoS Pathog
, vol.11
, pp. e1005279
-
-
Zhuo, X.1
Feschotte, C.2
-
20
-
-
84922382727
-
Proliferation of endogenous retroviruses in the early stages of a host germ line invasion
-
Ishida Y., Zhao K., Greenwood A.D., Roca A.L. Proliferation of endogenous retroviruses in the early stages of a host germ line invasion. Mol Biol Evol 2015, 32:109-120.
-
(2015)
Mol Biol Evol
, vol.32
, pp. 109-120
-
-
Ishida, Y.1
Zhao, K.2
Greenwood, A.D.3
Roca, A.L.4
-
21
-
-
84924872295
-
"Menage a Trois": the evolutionary interplay between JSRV, enJSRVs and domestic sheep
-
Armezzani A., Varela M., Spencer T.E., Palmarini M., Arnaud F. "Menage a Trois": the evolutionary interplay between JSRV, enJSRVs and domestic sheep. Viruses 2014, 6:4926-4945.
-
(2014)
Viruses
, vol.6
, pp. 4926-4945
-
-
Armezzani, A.1
Varela, M.2
Spencer, T.E.3
Palmarini, M.4
Arnaud, F.5
-
22
-
-
84922309125
-
Retroviral envelope gene captures and syncytin exaptation for placentation in marsupials
-
Cornelis G., Vernochet C., Carradec Q., Souquere S., Mulot B., Catzeflis F., Nilsson M.A., Menzies B.R., Renfree M.B., Pierron G., Zeller U., Heidmann O., Dupressoir A., Heidmann T. Retroviral envelope gene captures and syncytin exaptation for placentation in marsupials. Proc Natl Acad Sci U S A 2015, 112:E487-E496.
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, pp. E487-E496
-
-
Cornelis, G.1
Vernochet, C.2
Carradec, Q.3
Souquere, S.4
Mulot, B.5
Catzeflis, F.6
Nilsson, M.A.7
Menzies, B.R.8
Renfree, M.B.9
Pierron, G.10
Zeller, U.11
Heidmann, O.12
Dupressoir, A.13
Heidmann, T.14
-
23
-
-
84948134143
-
An evolutionarily young polar bear (Ursus maritimus) endogenous retrovirus identified from next generation sequence data
-
Tsangaras K., Mayer J., Alquezar-Planas D.E., Greenwood A.D. An evolutionarily young polar bear (Ursus maritimus) endogenous retrovirus identified from next generation sequence data. Viruses 2015, 7:6089-6107.
-
(2015)
Viruses
, vol.7
, pp. 6089-6107
-
-
Tsangaras, K.1
Mayer, J.2
Alquezar-Planas, D.E.3
Greenwood, A.D.4
-
25
-
-
84855281420
-
Repetitive elements may comprise over two-thirds of the human genome
-
de Koning A.P., Gu W., Castoe T.A., Batzer M.A., Pollock D.D. Repetitive elements may comprise over two-thirds of the human genome. PLoS Genet 2011, 7:e1002384.
-
(2011)
PLoS Genet
, vol.7
, pp. e1002384
-
-
de Koning, A.P.1
Gu, W.2
Castoe, T.A.3
Batzer, M.A.4
Pollock, D.D.5
-
26
-
-
0018634057
-
Endogenous viral genes are non-essential in the chicken
-
Astrin S.M., Buss E.G., Haywards W.S. Endogenous viral genes are non-essential in the chicken. Nature 1979, 282:339-341.
-
(1979)
Nature
, vol.282
, pp. 339-341
-
-
Astrin, S.M.1
Buss, E.G.2
Haywards, W.S.3
-
27
-
-
0018402924
-
Endogenous mammary tumour virus DNA varies among wild mice and segregates during inbreeding
-
Cohen J.C., Varmus H.E. Endogenous mammary tumour virus DNA varies among wild mice and segregates during inbreeding. Nature 1979, 278:418-423.
-
(1979)
Nature
, vol.278
, pp. 418-423
-
-
Cohen, J.C.1
Varmus, H.E.2
-
28
-
-
0018584075
-
The distribution of endogenous chicken retrovirus sequences in the DNA of galliform birds does not coincide with avian phylogenetic relationships
-
Frisby D.P., Weiss R.A., Roussel M., Stehelin D. The distribution of endogenous chicken retrovirus sequences in the DNA of galliform birds does not coincide with avian phylogenetic relationships. Cell 1979, 17:623-634.
-
(1979)
Cell
, vol.17
, pp. 623-634
-
-
Frisby, D.P.1
Weiss, R.A.2
Roussel, M.3
Stehelin, D.4
-
29
-
-
33750214531
-
The discovery of endogenous retroviruses
-
Weiss R.A. The discovery of endogenous retroviruses. Retrovirology 2006, 3:67.
-
(2006)
Retrovirology
, vol.3
, pp. 67
-
-
Weiss, R.A.1
-
30
-
-
0021715393
-
The significance of responses of the genome to challenge
-
McClintock B. The significance of responses of the genome to challenge. Science 1984, 226:792-801.
-
(1984)
Science
, vol.226
, pp. 792-801
-
-
McClintock, B.1
-
31
-
-
84978726170
-
Transposable elements, polydactyl proteins, and the genesis of human-specific transcription networks
-
Trono D. Transposable elements, polydactyl proteins, and the genesis of human-specific transcription networks. Cold Spring Harb Symp Quant Biol 2016, 10.1101/sqb.2015.80.027573.
-
(2016)
Cold Spring Harb Symp Quant Biol
-
-
Trono, D.1
-
32
-
-
0342545919
-
Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis
-
Mi S., Lee X., Li X., Veldman G.M., Finnerty H., Racie L., LaVallie E., Tang X.Y., Edouard P., Howes S., Keith J.C., McCoy J.M. Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis. Nature 2000, 403:785-789.
-
(2000)
Nature
, vol.403
, pp. 785-789
-
-
Mi, S.1
Lee, X.2
Li, X.3
Veldman, G.M.4
Finnerty, H.5
Racie, L.6
LaVallie, E.7
Tang, X.Y.8
Edouard, P.9
Howes, S.10
Keith, J.C.11
McCoy, J.M.12
-
33
-
-
0242300065
-
Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution
-
Blaise S., de Parseval N., Benit L., Heidmann T. Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution. Proc Natl Acad Sci U S A 2003, 100:13013-13018.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 13013-13018
-
-
Blaise, S.1
de Parseval, N.2
Benit, L.3
Heidmann, T.4
-
34
-
-
47649126492
-
Early patterning of the chorion leads to the trilaminar trophoblast cell structure in the placental labyrinth
-
Simmons D.G., Natale D.R., Begay V., Hughes M., Leutz A., Cross J.C. Early patterning of the chorion leads to the trilaminar trophoblast cell structure in the placental labyrinth. Development 2008, 135:2083-2091.
-
(2008)
Development
, vol.135
, pp. 2083-2091
-
-
Simmons, D.G.1
Natale, D.R.2
Begay, V.3
Hughes, M.4
Leutz, A.5
Cross, J.C.6
-
35
-
-
67749122582
-
Syncytin-A knockout mice demonstrate the critical role in placentation of a fusogenic, endogenous retrovirus-derived, envelope gene
-
Dupressoir A., Vernochet C., Bawa O., Harper F., Pierron G., Opolon P., Heidmann T. Syncytin-A knockout mice demonstrate the critical role in placentation of a fusogenic, endogenous retrovirus-derived, envelope gene. Proc Natl Acad Sci U S A 2009, 106:12127-12132.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 12127-12132
-
-
Dupressoir, A.1
Vernochet, C.2
Bawa, O.3
Harper, F.4
Pierron, G.5
Opolon, P.6
Heidmann, T.7
-
36
-
-
81755187043
-
A pair of co-opted retroviral envelope syncytin genes is required for formation of the two-layered murine placental syncytiotrophoblast
-
Dupressoir A., Vernochet C., Harper F., Guegan J., Dessen P., Pierron G., Heidmann T. A pair of co-opted retroviral envelope syncytin genes is required for formation of the two-layered murine placental syncytiotrophoblast. Proc Natl Acad Sci U S A 2011, 108:E1164-E1173.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. E1164-E1173
-
-
Dupressoir, A.1
Vernochet, C.2
Harper, F.3
Guegan, J.4
Dessen, P.5
Pierron, G.6
Heidmann, T.7
-
37
-
-
84943356009
-
Baton pass hypothesis: successive incorporation of unconserved endogenous retroviral genes for placentation during mammalian evolution
-
Imakawa K., Nakagawa S., Miyazawa T. Baton pass hypothesis: successive incorporation of unconserved endogenous retroviral genes for placentation during mammalian evolution. Genes Cells 2015, 20:771-788.
-
(2015)
Genes Cells
, vol.20
, pp. 771-788
-
-
Imakawa, K.1
Nakagawa, S.2
Miyazawa, T.3
-
38
-
-
38049097957
-
Placental syncytins: genetic disjunction between the fusogenic and immunosuppressive activity of retroviral envelope proteins
-
Mangeney M., Renard M., Schlecht-Louf G., Bouallaga I., Heidmann O., Letzelter C., Richaud A., Ducos B., Heidmann T. Placental syncytins: genetic disjunction between the fusogenic and immunosuppressive activity of retroviral envelope proteins. Proc Natl Acad Sci U S A 2007, 104:20534-20539.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 20534-20539
-
-
Mangeney, M.1
Renard, M.2
Schlecht-Louf, G.3
Bouallaga, I.4
Heidmann, O.5
Letzelter, C.6
Richaud, A.7
Ducos, B.8
Heidmann, T.9
-
39
-
-
84944269311
-
Cell surface proteomic map of HIV infection reveals antagonism of amino acid metabolism by Vpu and Nef
-
Matheson N.J., Sumner J., Wals K., Rapiteanu R., Weekes M.P., Vigan R., Weinelt J., Schindler M., Antrobus R., Costa A.S., Frezza C., Clish C.B., Neil S.J., Lehner P.J. Cell surface proteomic map of HIV infection reveals antagonism of amino acid metabolism by Vpu and Nef. Cell Host Microbe 2015, 18:409-423.
-
(2015)
Cell Host Microbe
, vol.18
, pp. 409-423
-
-
Matheson, N.J.1
Sumner, J.2
Wals, K.3
Rapiteanu, R.4
Weekes, M.P.5
Vigan, R.6
Weinelt, J.7
Schindler, M.8
Antrobus, R.9
Costa, A.S.10
Frezza, C.11
Clish, C.B.12
Neil, S.J.13
Lehner, P.J.14
-
40
-
-
67649842408
-
MHC class I antigen presentation: learning from viral evasion strategies
-
Hansen T.H., Bouvier M. MHC class I antigen presentation: learning from viral evasion strategies. Nat Rev Immunol 2009, 9:503-513.
-
(2009)
Nat Rev Immunol
, vol.9
, pp. 503-513
-
-
Hansen, T.H.1
Bouvier, M.2
-
41
-
-
0037213592
-
Receptor usage and fetal expression of ovine endogenous betaretroviruses: implications for coevolution of endogenous and exogenous retroviruses
-
Spencer T.E., Mura M., Gray C.A., Griebel P.J., Palmarini M. Receptor usage and fetal expression of ovine endogenous betaretroviruses: implications for coevolution of endogenous and exogenous retroviruses. J Virol 2003, 77:749-753.
-
(2003)
J Virol
, vol.77
, pp. 749-753
-
-
Spencer, T.E.1
Mura, M.2
Gray, C.A.3
Griebel, P.J.4
Palmarini, M.5
-
42
-
-
0024459452
-
Fv-4 resistance gene: a truncated endogenous murine leukemia virus with ecotropic interference properties
-
Ikeda H., Sugimura H. Fv-4 resistance gene: a truncated endogenous murine leukemia virus with ecotropic interference properties. J Virol 1989, 63:5405-5412.
-
(1989)
J Virol
, vol.63
, pp. 5405-5412
-
-
Ikeda, H.1
Sugimura, H.2
-
43
-
-
0034755162
-
Fv-4: identification of the defect in Env and the mechanism of resistance to ecotropic murine leukemia virus
-
Taylor G.M., Gao Y., Sanders D.A. Fv-4: identification of the defect in Env and the mechanism of resistance to ecotropic murine leukemia virus. J Virol 2001, 75:11244-11248.
-
(2001)
J Virol
, vol.75
, pp. 11244-11248
-
-
Taylor, G.M.1
Gao, Y.2
Sanders, D.A.3
-
44
-
-
0028293280
-
Defective endogenous proviruses are expressed in feline lymphoid cells: evidence for a role in natural resistance to subgroup B feline leukemia viruses
-
McDougall A.S., Terry A., Tzavaras T., Cheney C., Rojko J., Neil J.C. Defective endogenous proviruses are expressed in feline lymphoid cells: evidence for a role in natural resistance to subgroup B feline leukemia viruses. J Virol 1994, 68:2151-2160.
-
(1994)
J Virol
, vol.68
, pp. 2151-2160
-
-
McDougall, A.S.1
Terry, A.2
Tzavaras, T.3
Cheney, C.4
Rojko, J.5
Neil, J.C.6
-
45
-
-
0025341792
-
A congenic line of the BALB/c mouse strain with the endogenous mouse mammary tumor virus proviral gene Mtv-3: tissue-specific expression and correlation with resistance to mouse mammary tumor virus infection and tumorigenesis
-
Hainaut P., Castellazzi M., Gonzales D., Clausse N., Hilgers J., Crepin M. A congenic line of the BALB/c mouse strain with the endogenous mouse mammary tumor virus proviral gene Mtv-3: tissue-specific expression and correlation with resistance to mouse mammary tumor virus infection and tumorigenesis. Cancer Res 1990, 50:3754-3760.
-
(1990)
Cancer Res
, vol.50
, pp. 3754-3760
-
-
Hainaut, P.1
Castellazzi, M.2
Gonzales, D.3
Clausse, N.4
Hilgers, J.5
Crepin, M.6
-
46
-
-
84888642291
-
Differential L1 regulation in pluripotent stem cells of humans and apes
-
Marchetto M.C., Narvaiza I., Denli A.M., Benner C., Lazzarini T.A., Nathanson J.L., Paquola A.C., Desai K.N., Herai R.H., Weitzman M.D., Yeo G.W., Muotri A.R., Gage F.H. Differential L1 regulation in pluripotent stem cells of humans and apes. Nature 2013, 503:525-529.
-
(2013)
Nature
, vol.503
, pp. 525-529
-
-
Marchetto, M.C.1
Narvaiza, I.2
Denli, A.M.3
Benner, C.4
Lazzarini, T.A.5
Nathanson, J.L.6
Paquola, A.C.7
Desai, K.N.8
Herai, R.H.9
Weitzman, M.D.10
Yeo, G.W.11
Muotri, A.R.12
Gage, F.H.13
-
47
-
-
3342920600
-
Late viral interference induced by transdominant Gag of an endogenous retrovirus
-
Mura M., Murcia P., Caporale M., Spencer T.E., Nagashima K., Rein A., Palmarini M. Late viral interference induced by transdominant Gag of an endogenous retrovirus. Proc Natl Acad Sci U S A 2004, 101:11117-11122.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 11117-11122
-
-
Mura, M.1
Murcia, P.2
Caporale, M.3
Spencer, T.E.4
Nagashima, K.5
Rein, A.6
Palmarini, M.7
-
48
-
-
0029763293
-
Positional cloning of the mouse retrovirus restriction gene Fv1
-
Best S., Le Tissier P., Towers G., Stoye J.P. Positional cloning of the mouse retrovirus restriction gene Fv1. Nature 1996, 382:826-829.
-
(1996)
Nature
, vol.382
, pp. 826-829
-
-
Best, S.1
Le Tissier, P.2
Towers, G.3
Stoye, J.P.4
-
49
-
-
84897457170
-
Evolution of the retroviral restriction gene Fv1: inhibition of non-MLV retroviruses
-
Yap M.W., Colbeck E., Ellis S.A., Stoye J.P. Evolution of the retroviral restriction gene Fv1: inhibition of non-MLV retroviruses. PLoS Pathog 2014, 10:e1003968.
-
(2014)
PLoS Pathog
, vol.10
, pp. e1003968
-
-
Yap, M.W.1
Colbeck, E.2
Ellis, S.A.3
Stoye, J.P.4
-
50
-
-
84871999134
-
P53 cooperates with DNA methylation and a suicidal interferon response to maintain epigenetic silencing of repeats and noncoding RNAs
-
Leonova K.I., Brodsky L., Lipchick B., Pal M., Novototskaya L., Chenchik A.A., Sen G.C., Komarova E.A., Gudkov A.V. p53 cooperates with DNA methylation and a suicidal interferon response to maintain epigenetic silencing of repeats and noncoding RNAs. Proc Natl Acad Sci U S A 2013, 110:E89-E98.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. E89-E98
-
-
Leonova, K.I.1
Brodsky, L.2
Lipchick, B.3
Pal, M.4
Novototskaya, L.5
Chenchik, A.A.6
Sen, G.C.7
Komarova, E.A.8
Gudkov, A.V.9
-
51
-
-
84953426050
-
P53 genes function to restrain mobile elements
-
Wylie A., Jones A.E., D'Brot A., Lu W.J., Kurtz P., Moran J.V., Rakheja D., Chen K.S., Hammer R.E., Comerford S.A., Amatruda J.F., Abrams J.M. p53 genes function to restrain mobile elements. Genes Dev 2016, 30:64-77.
-
(2016)
Genes Dev
, vol.30
, pp. 64-77
-
-
Wylie, A.1
Jones, A.E.2
D'Brot, A.3
Lu, W.J.4
Kurtz, P.5
Moran, J.V.6
Rakheja, D.7
Chen, K.S.8
Hammer, R.E.9
Comerford, S.A.10
Amatruda, J.F.11
Abrams, J.M.12
-
52
-
-
84940403834
-
DNA-demethylating agents target colorectal cancer cells by inducing viral mimicry by endogenous transcripts
-
Roulois D., Loo Yau H., Singhania R., Wang Y., Danesh A., Shen S.Y., Han H., Liang G., Jones P.A., Pugh T.J., O'Brien C., De Carvalho D.D. DNA-demethylating agents target colorectal cancer cells by inducing viral mimicry by endogenous transcripts. Cell 2015, 162:961-973.
-
(2015)
Cell
, vol.162
, pp. 961-973
-
-
Roulois, D.1
Loo Yau, H.2
Singhania, R.3
Wang, Y.4
Danesh, A.5
Shen, S.Y.6
Han, H.7
Liang, G.8
Jones, P.A.9
Pugh, T.J.10
O'Brien, C.11
De Carvalho, D.D.12
-
53
-
-
84940381273
-
Inhibiting DNA methylation causes an interferon response in cancer via dsRNA including endogenous retroviruses
-
Chiappinelli K.B., Strissel P.L., Desrichard A., Li H., Henke C., Akman B., Hein A., Rote N.S., Cope L.M., Snyder A., Makarov V., Buhu S., Slamon D.J., Wolchok J.D., Pardoll D.M., Beckmann M.W., Zahnow C.A., Mergoub T., Chan T.A., Baylin S.B., Strick R. Inhibiting DNA methylation causes an interferon response in cancer via dsRNA including endogenous retroviruses. Cell 2015, 162:974-986.
-
(2015)
Cell
, vol.162
, pp. 974-986
-
-
Chiappinelli, K.B.1
Strissel, P.L.2
Desrichard, A.3
Li, H.4
Henke, C.5
Akman, B.6
Hein, A.7
Rote, N.S.8
Cope, L.M.9
Snyder, A.10
Makarov, V.11
Buhu, S.12
Slamon, D.J.13
Wolchok, J.D.14
Pardoll, D.M.15
Beckmann, M.W.16
Zahnow, C.A.17
Mergoub, T.18
Chan, T.A.19
Baylin, S.B.20
Strick, R.21
more..
-
54
-
-
84899112356
-
The enemy within: endogenous retroelements and autoimmune disease
-
Volkman H.E., Stetson D.B. The enemy within: endogenous retroelements and autoimmune disease. Nat Immunol 2014, 15:415-422.
-
(2014)
Nat Immunol
, vol.15
, pp. 415-422
-
-
Volkman, H.E.1
Stetson, D.B.2
-
55
-
-
84937604420
-
Activation of the innate immune response by endogenous retroviruses
-
Hurst T.P., Magiorkinis G. Activation of the innate immune response by endogenous retroviruses. J Gen Virol 2015, 96:1207-1218.
-
(2015)
J Gen Virol
, vol.96
, pp. 1207-1218
-
-
Hurst, T.P.1
Magiorkinis, G.2
-
56
-
-
84927720839
-
Type I interferon controls propagation of long interspersed element-1
-
Yu Q., Carbone C.J., Katlinskaya Y.V., Zheng H., Zheng K., Luo M., Wang P.J., Greenberg R.A., Fuchs S.Y. Type I interferon controls propagation of long interspersed element-1. J Biol Chem 2015, 290:10191-10199.
-
(2015)
J Biol Chem
, vol.290
, pp. 10191-10199
-
-
Yu, Q.1
Carbone, C.J.2
Katlinskaya, Y.V.3
Zheng, H.4
Zheng, K.5
Luo, M.6
Wang, P.J.7
Greenberg, R.A.8
Fuchs, S.Y.9
-
57
-
-
84944810495
-
The Ro60 autoantigen binds endogenous retroelements and regulates inflammatory gene expression
-
Hung T., Pratt G.A., Sundararaman B., Townsend M.J., Chaivorapol C., Bhangale T., Graham R.R., Ortmann W., Criswell L.A., Yeo G.W., Behrens T.W. The Ro60 autoantigen binds endogenous retroelements and regulates inflammatory gene expression. Science 2015, 350:455-459.
-
(2015)
Science
, vol.350
, pp. 455-459
-
-
Hung, T.1
Pratt, G.A.2
Sundararaman, B.3
Townsend, M.J.4
Chaivorapol, C.5
Bhangale, T.6
Graham, R.R.7
Ortmann, W.8
Criswell, L.A.9
Yeo, G.W.10
Behrens, T.W.11
-
58
-
-
40849114740
-
Human RNA "rumor" viruses: the search for novel human retroviruses in chronic disease
-
table of contents
-
Voisset C., Weiss R.A., Griffiths D.J. Human RNA "rumor" viruses: the search for novel human retroviruses in chronic disease. Microbiol Mol Biol Rev 2008, 72:157-196. table of contents.
-
(2008)
Microbiol Mol Biol Rev
, vol.72
, pp. 157-196
-
-
Voisset, C.1
Weiss, R.A.2
Griffiths, D.J.3
-
59
-
-
80455174404
-
An autoimmune disease prevented by anti-retroviral drugs
-
Beck-Engeser G.B., Eilat D., Wabl M. An autoimmune disease prevented by anti-retroviral drugs. Retrovirology 2011, 8:91.
-
(2011)
Retrovirology
, vol.8
, pp. 91
-
-
Beck-Engeser, G.B.1
Eilat, D.2
Wabl, M.3
-
60
-
-
84940121945
-
Cutting edge: cGAS is required for lethal autoimmune disease in the Trex1-deficient mouse model of Aicardi-Goutieres syndrome
-
Gray E.E., Treuting P.M., Woodward J.J., Stetson D.B. Cutting edge: cGAS is required for lethal autoimmune disease in the Trex1-deficient mouse model of Aicardi-Goutieres syndrome. J Immunol 2015, 195:1939-1943.
-
(2015)
J Immunol
, vol.195
, pp. 1939-1943
-
-
Gray, E.E.1
Treuting, P.M.2
Woodward, J.J.3
Stetson, D.B.4
-
61
-
-
84919443956
-
MAVS, cGAS, and endogenous retroviruses in T-independent B cell responses
-
Zeng M., Hu Z., Shi X., Li X., Zhan X., Li X.D., Wang J., Choi J.H., Wang K.W., Purrington T., Tang M., Fina M., DeBerardinis R.J., Moresco E.M., Pedersen G., McInerney G.M., Karlsson Hedestam G.B., Chen Z.J., Beutler B. MAVS, cGAS, and endogenous retroviruses in T-independent B cell responses. Science 2014, 346:1486-1492.
-
(2014)
Science
, vol.346
, pp. 1486-1492
-
-
Zeng, M.1
Hu, Z.2
Shi, X.3
Li, X.4
Zhan, X.5
Li, X.D.6
Wang, J.7
Choi, J.H.8
Wang, K.W.9
Purrington, T.10
Tang, M.11
Fina, M.12
DeBerardinis, R.J.13
Moresco, E.M.14
Pedersen, G.15
McInerney, G.M.16
Karlsson Hedestam, G.B.17
Chen, Z.J.18
Beutler, B.19
-
62
-
-
0018622035
-
Evidence supporting a physiological role for endogenous C-type virus in the immune system
-
DeLamarter J.F., Stoye J., Schumann G., Moroni C. Evidence supporting a physiological role for endogenous C-type virus in the immune system. Haematol Blood Transfus 1979, 23:413-415.
-
(1979)
Haematol Blood Transfus
, vol.23
, pp. 413-415
-
-
DeLamarter, J.F.1
Stoye, J.2
Schumann, G.3
Moroni, C.4
-
63
-
-
0031437430
-
The evolution of MHC diversity by segmental duplication and transposition of retroelements
-
Kulski J.K., Gaudieri S., Bellgard M., Balmer L., Giles K., Inoko H., Dawkins R.L. The evolution of MHC diversity by segmental duplication and transposition of retroelements. J Mol Evol 1997, 45:599-609.
-
(1997)
J Mol Evol
, vol.45
, pp. 599-609
-
-
Kulski, J.K.1
Gaudieri, S.2
Bellgard, M.3
Balmer, L.4
Giles, K.5
Inoko, H.6
Dawkins, R.L.7
-
64
-
-
0033000996
-
Comparison between two human endogenous retrovirus (HERV)-rich regions within the major histocompatibility complex
-
Kulski J.K., Gaudieri S., Inoko H., Dawkins R.L. Comparison between two human endogenous retrovirus (HERV)-rich regions within the major histocompatibility complex. J Mol Evol 1999, 48:675-683.
-
(1999)
J Mol Evol
, vol.48
, pp. 675-683
-
-
Kulski, J.K.1
Gaudieri, S.2
Inoko, H.3
Dawkins, R.L.4
-
65
-
-
45749107847
-
Impact of endogenous intronic retroviruses on major histocompatibility complex class II diversity and stability
-
Doxiadis G.G., de Groot N., Bontrop R.E. Impact of endogenous intronic retroviruses on major histocompatibility complex class II diversity and stability. J Virol 2008, 82:6667-6677.
-
(2008)
J Virol
, vol.82
, pp. 6667-6677
-
-
Doxiadis, G.G.1
de Groot, N.2
Bontrop, R.E.3
-
66
-
-
0028925965
-
Hypothesis: a memory lymphocyte-specific soma-to-germline genetic feedback loop
-
Rothenfluh H.S. Hypothesis: a memory lymphocyte-specific soma-to-germline genetic feedback loop. Immunol Cell Biol 1995, 73:174-180.
-
(1995)
Immunol Cell Biol
, vol.73
, pp. 174-180
-
-
Rothenfluh, H.S.1
-
67
-
-
73849140080
-
Endogenous non-retroviral RNA virus elements in mammalian genomes
-
Horie M., Honda T., Suzuki Y., Kobayashi Y., Daito T., Oshida T., Ikuta K., Jern P., Gojobori T., Coffin J.M., Tomonaga K. Endogenous non-retroviral RNA virus elements in mammalian genomes. Nature 2010, 463:84-87.
-
(2010)
Nature
, vol.463
, pp. 84-87
-
-
Horie, M.1
Honda, T.2
Suzuki, Y.3
Kobayashi, Y.4
Daito, T.5
Oshida, T.6
Ikuta, K.7
Jern, P.8
Gojobori, T.9
Coffin, J.M.10
Tomonaga, K.11
-
68
-
-
78649718268
-
Endogenous viral elements in animal genomes
-
Katzourakis A., Gifford R.J. Endogenous viral elements in animal genomes. PLoS Genet 2010, 6:e1001191.
-
(2010)
PLoS Genet
, vol.6
, pp. e1001191
-
-
Katzourakis, A.1
Gifford, R.J.2
-
69
-
-
84906968902
-
Inhibition of Borna disease virus replication by an endogenous bornavirus-like element in the ground squirrel genome
-
Fujino K., Horie M., Honda T., Merriman D.K., Tomonaga K. Inhibition of Borna disease virus replication by an endogenous bornavirus-like element in the ground squirrel genome. Proc Natl Acad Sci U S A 2014, 111:13175-13180.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 13175-13180
-
-
Fujino, K.1
Horie, M.2
Honda, T.3
Merriman, D.K.4
Tomonaga, K.5
-
70
-
-
84942055263
-
PiRNAs derived from ancient viral processed pseudogenes as transgenerational sequence-specific immune memory in mammals
-
Parrish N.F., Fujino K., Shiromoto Y., Iwasaki Y.W., Ha H., Xing J., Makino A., Kuramochi-Miyagawa S., Nakano T., Siomi H., Honda T., Tomonaga K. piRNAs derived from ancient viral processed pseudogenes as transgenerational sequence-specific immune memory in mammals. RNA 2015, 21:1691-1703.
-
(2015)
RNA
, vol.21
, pp. 1691-1703
-
-
Parrish, N.F.1
Fujino, K.2
Shiromoto, Y.3
Iwasaki, Y.W.4
Ha, H.5
Xing, J.6
Makino, A.7
Kuramochi-Miyagawa, S.8
Nakano, T.9
Siomi, H.10
Honda, T.11
Tomonaga, K.12
-
71
-
-
10644240714
-
Comprehensive analysis of human endogenous retrovirus transcriptional activity in human tissues with a retrovirus-specific microarray
-
Seifarth W., Frank O., Zeilfelder U., Spiess B., Greenwood A.D., Hehlmann R., Leib-Mosch C. Comprehensive analysis of human endogenous retrovirus transcriptional activity in human tissues with a retrovirus-specific microarray. J Virol 2005, 79:341-352.
-
(2005)
J Virol
, vol.79
, pp. 341-352
-
-
Seifarth, W.1
Frank, O.2
Zeilfelder, U.3
Spiess, B.4
Greenwood, A.D.5
Hehlmann, R.6
Leib-Mosch, C.7
-
72
-
-
0016893358
-
Endogenous oncornaviral gene expression in adult and fetal mice: quantitative, histologic, and physiologic studies of the major viral glycorprotein, gp70
-
Lerner R.A., Wilson C.B., Villano B.C., McConahey P.J., Dixon F.J. Endogenous oncornaviral gene expression in adult and fetal mice: quantitative, histologic, and physiologic studies of the major viral glycorprotein, gp70. J Exp Med 1976, 143:151-166.
-
(1976)
J Exp Med
, vol.143
, pp. 151-166
-
-
Lerner, R.A.1
Wilson, C.B.2
Villano, B.C.3
McConahey, P.J.4
Dixon, F.J.5
-
73
-
-
0026320514
-
The evolution of placental mammals
-
Harris J.R. The evolution of placental mammals. FEBS Lett 1991, 295:3-4.
-
(1991)
FEBS Lett
, vol.295
, pp. 3-4
-
-
Harris, J.R.1
-
74
-
-
0032054301
-
Placental endogenous retrovirus (ERV): structural, functional, and evolutionary significance
-
Harris J.R. Placental endogenous retrovirus (ERV): structural, functional, and evolutionary significance. Bioessays 1998, 20:307-316.
-
(1998)
Bioessays
, vol.20
, pp. 307-316
-
-
Harris, J.R.1
-
75
-
-
0031751113
-
Beneficial role of human endogenous retroviruses: facts and hypotheses
-
Larsson E., Andersson G. Beneficial role of human endogenous retroviruses: facts and hypotheses. Scand J Immunol 1998, 48:329-338.
-
(1998)
Scand J Immunol
, vol.48
, pp. 329-338
-
-
Larsson, E.1
Andersson, G.2
-
76
-
-
74549125753
-
An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data
-
Ramskold D., Wang E.T., Burge C.B., Sandberg R. An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data. PLoS Comput Biol 2009, 5:e1000598.
-
(2009)
PLoS Comput Biol
, vol.5
, pp. e1000598
-
-
Ramskold, D.1
Wang, E.T.2
Burge, C.B.3
Sandberg, R.4
-
77
-
-
84863458292
-
Embryonic stem cell potency fluctuates with endogenous retrovirus activity
-
Macfarlan T.S., Gifford W.D., Driscoll S., Lettieri K., Rowe H.M., Bonanomi D., Firth A., Singer O., Trono D., Pfaff S.L. Embryonic stem cell potency fluctuates with endogenous retrovirus activity. Nature 2012, 487:57-63.
-
(2012)
Nature
, vol.487
, pp. 57-63
-
-
Macfarlan, T.S.1
Gifford, W.D.2
Driscoll, S.3
Lettieri, K.4
Rowe, H.M.5
Bonanomi, D.6
Firth, A.7
Singer, O.8
Trono, D.9
Pfaff, S.L.10
-
78
-
-
84871215627
-
HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency
-
Santoni F.A., Guerra J., Luban J. HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency. Retrovirology 2012, 9:111.
-
(2012)
Retrovirology
, vol.9
, pp. 111
-
-
Santoni, F.A.1
Guerra, J.2
Luban, J.3
-
79
-
-
84922115236
-
Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells
-
Wang J., Xie G., Singh M., Ghanbarian A.T., Rasko T., Szvetnik A., Cai H., Besser D., Prigione A., Fuchs N.V., Schumann G.G., Chen W., Lorincz M.C., Ivics Z., Hurst L.D., Izsvak Z. Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells. Nature 2014, 516:405-409.
-
(2014)
Nature
, vol.516
, pp. 405-409
-
-
Wang, J.1
Xie, G.2
Singh, M.3
Ghanbarian, A.T.4
Rasko, T.5
Szvetnik, A.6
Cai, H.7
Besser, D.8
Prigione, A.9
Fuchs, N.V.10
Schumann, G.G.11
Chen, W.12
Lorincz, M.C.13
Ivics, Z.14
Hurst, L.D.15
Izsvak, Z.16
-
80
-
-
84898010302
-
The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity
-
Lu X., Sachs F., Ramsay L., Jacques P.E., Goke J., Bourque G., Ng H.H. The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity. Nat Struct Mol Biol 2014, 21:423-425.
-
(2014)
Nat Struct Mol Biol
, vol.21
, pp. 423-425
-
-
Lu, X.1
Sachs, F.2
Ramsay, L.3
Jacques, P.E.4
Goke, J.5
Bourque, G.6
Ng, H.H.7
-
81
-
-
84906663724
-
Dynamic regulation of human endogenous retroviruses mediates factor-induced reprogramming and differentiation potential
-
Ohnuki M., Tanabe K., Sutou K., Teramoto I., Sawamura Y., Narita M., Nakamura M., Tokunaga Y., Nakamura M., Watanabe A., Yamanaka S., Takahashi K. Dynamic regulation of human endogenous retroviruses mediates factor-induced reprogramming and differentiation potential. Proc Natl Acad Sci U S A 2014, 111:12426-12431.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 12426-12431
-
-
Ohnuki, M.1
Tanabe, K.2
Sutou, K.3
Teramoto, I.4
Sawamura, Y.5
Narita, M.6
Nakamura, M.7
Tokunaga, Y.8
Nakamura, M.9
Watanabe, A.10
Yamanaka, S.11
Takahashi, K.12
-
82
-
-
84930227422
-
Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells
-
Grow E.J., Flynn R.A., Chavez S.L., Bayless N.L., Wossidlo M., Wesche D.J., Martin L., Ware C.B., Blish C.A., Chang H.Y., Pera R.A., Wysocka J. Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells. Nature 2015, 522:221-225.
-
(2015)
Nature
, vol.522
, pp. 221-225
-
-
Grow, E.J.1
Flynn, R.A.2
Chavez, S.L.3
Bayless, N.L.4
Wossidlo, M.5
Wesche, D.J.6
Martin, L.7
Ware, C.B.8
Blish, C.A.9
Chang, H.Y.10
Pera, R.A.11
Wysocka, J.12
-
83
-
-
84979851107
-
Transposable elements and DNA methylation create in embryonic stem cells human-specific regulatory sequences associated with distal enhancers and noncoding RNAs
-
Glinsky G.V. Transposable elements and DNA methylation create in embryonic stem cells human-specific regulatory sequences associated with distal enhancers and noncoding RNAs. Genome Biol Evol 2015, 7:1432-1454.
-
(2015)
Genome Biol Evol
, vol.7
, pp. 1432-1454
-
-
Glinsky, G.V.1
-
84
-
-
77954100084
-
Transposable elements have rewired the core regulatory network of human embryonic stem cells
-
Kunarso G., Chia N.Y., Jeyakani J., Hwang C., Lu X., Chan Y.S., Ng H.H., Bourque G. Transposable elements have rewired the core regulatory network of human embryonic stem cells. Nat Genet 2010, 42:631-634.
-
(2010)
Nat Genet
, vol.42
, pp. 631-634
-
-
Kunarso, G.1
Chia, N.Y.2
Jeyakani, J.3
Hwang, C.4
Lu, X.5
Chan, Y.S.6
Ng, H.H.7
Bourque, G.8
-
85
-
-
84902008373
-
A role for retrotransposon LINE-1 in fetal oocyte attrition in mice
-
Malki S., van der Heijden G.W., O'Donnell K.A., Martin S.L., Bortvin A. A role for retrotransposon LINE-1 in fetal oocyte attrition in mice. Dev Cell 2014, 29:521-533.
-
(2014)
Dev Cell
, vol.29
, pp. 521-533
-
-
Malki, S.1
van der Heijden, G.W.2
O'Donnell, K.A.3
Martin, S.L.4
Bortvin, A.5
-
86
-
-
84925351951
-
Piwi-pathway alteration induces LINE-1 transposon derepression and infertility development in cryptorchidism
-
Hadziselimovic F., Hadziselimovic N.O., Demougin P., Krey G., Oakeley E. Piwi-pathway alteration induces LINE-1 transposon derepression and infertility development in cryptorchidism. Sex Dev 2015, 9:98-104.
-
(2015)
Sex Dev
, vol.9
, pp. 98-104
-
-
Hadziselimovic, F.1
Hadziselimovic, N.O.2
Demougin, P.3
Krey, G.4
Oakeley, E.5
-
87
-
-
84861219911
-
C. elegans germ cells show temperature and age-dependent expression of Cer1, a Gypsy/Ty3-related retrotransposon
-
Dennis S., Sheth U., Feldman J.L., English K.A., Priess J.R. C. elegans germ cells show temperature and age-dependent expression of Cer1, a Gypsy/Ty3-related retrotransposon. PLoS Pathog 2012, 8:e1002591.
-
(2012)
PLoS Pathog
, vol.8
, pp. e1002591
-
-
Dennis, S.1
Sheth, U.2
Feldman, J.L.3
English, K.A.4
Priess, J.R.5
-
88
-
-
84899548825
-
Long interspersed element-1 protein expression is a hallmark of many human cancers
-
Rodic N., Sharma R., Sharma R., Zampella J., Dai L., Taylor M.S., Hruban R.H., Iacobuzio-Donahue C.A., Maitra A., Torbenson M.S., Goggins M., Shih Ie M., Duffield A.S., Montgomery E.A., Gabrielson E., Netto G.J., Lotan T.L., De Marzo A.M., Westra W., Binder Z.A., Orr B.A., Gallia G.L., Eberhart C.G., Boeke J.D., Harris C.R., Burns K.H. Long interspersed element-1 protein expression is a hallmark of many human cancers. Am J Pathol 2014, 184:1280-1286.
-
(2014)
Am J Pathol
, vol.184
, pp. 1280-1286
-
-
Rodic, N.1
Sharma, R.2
Sharma, R.3
Zampella, J.4
Dai, L.5
Taylor, M.S.6
Hruban, R.H.7
Iacobuzio-Donahue, C.A.8
Maitra, A.9
Torbenson, M.S.10
Goggins, M.11
Shih Ie, M.12
Duffield, A.S.13
Montgomery, E.A.14
Gabrielson, E.15
Netto, G.J.16
Lotan, T.L.17
De Marzo, A.M.18
Westra, W.19
Binder, Z.A.20
Orr, B.A.21
Gallia, G.L.22
Eberhart, C.G.23
Boeke, J.D.24
Harris, C.R.25
Burns, K.H.26
more..
-
89
-
-
84941024427
-
Retrotransposon insertions in the clonal evolution of pancreatic ductal adenocarcinoma
-
Rodic N., Steranka J.P., Makohon-Moore A., Moyer A., Shen P., Sharma R., Kohutek Z.A., Huang C.R., Ahn D., Mita P., Taylor M.S., Barker N.J., Hruban R.H., Iacobuzio-Donahue C.A., Boeke J.D., Burns K.H. Retrotransposon insertions in the clonal evolution of pancreatic ductal adenocarcinoma. Nat Med 2015, 21:1060-1064.
-
(2015)
Nat Med
, vol.21
, pp. 1060-1064
-
-
Rodic, N.1
Steranka, J.P.2
Makohon-Moore, A.3
Moyer, A.4
Shen, P.5
Sharma, R.6
Kohutek, Z.A.7
Huang, C.R.8
Ahn, D.9
Mita, P.10
Taylor, M.S.11
Barker, N.J.12
Hruban, R.H.13
Iacobuzio-Donahue, C.A.14
Boeke, J.D.15
Burns, K.H.16
-
90
-
-
84941923663
-
Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution
-
Ewing A.D., Gacita A., Wood L.D., Ma F., Xing D., Kim M.S., Manda S.S., Abril G., Pereira G., Makohon-Moore A., Looijenga L.H., Gillis A.J., Hruban R.H., Anders R.A., Romans K.E., Pandey A., Iacobuzio-Donahue C.A., Vogelstein B., Kinzler K.W., Kazazian H.H., Solyom S. Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution. Genome Res 2015, 25:1536-1545.
-
(2015)
Genome Res
, vol.25
, pp. 1536-1545
-
-
Ewing, A.D.1
Gacita, A.2
Wood, L.D.3
Ma, F.4
Xing, D.5
Kim, M.S.6
Manda, S.S.7
Abril, G.8
Pereira, G.9
Makohon-Moore, A.10
Looijenga, L.H.11
Gillis, A.J.12
Hruban, R.H.13
Anders, R.A.14
Romans, K.E.15
Pandey, A.16
Iacobuzio-Donahue, C.A.17
Vogelstein, B.18
Kinzler, K.W.19
Kazazian, H.H.20
Solyom, S.21
more..
-
91
-
-
84905900534
-
Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes
-
Tubio J.M., Li Y., Ju Y.S., Martincorena I., Cooke S.L., Tojo M., Gundem G., Pipinikas C.P., Zamora J., Raine K., Menzies A., Roman-Garcia P., Fullam A., Gerstung M., Shlien A., Tarpey P.S., Papaemmanuil E., Knappskog S., Van Loo P., Ramakrishna M., Davies H.R., Marshall J., Wedge D.C., Teague J.W., Butler A.P., Nik-Zainal S., Alexandrov L., Behjati S., Yates L.R., Bolli N., Mudie L., Hardy C., Martin S., McLaren S., O'Meara S., Anderson E., Maddison M., Gamble S., Group I.B.C., Group I.B.C., Group I.P.C., Foster C., Warren A.Y., Whitaker H., Brewer D., Eeles R., Cooper C., Neal D., Lynch A.G., Visakorpi T. Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes. Science 2014, 345:1251343.
-
(2014)
Science
, vol.345
, pp. 1251343
-
-
Tubio, J.M.1
Li, Y.2
Ju, Y.S.3
Martincorena, I.4
Cooke, S.L.5
Tojo, M.6
Gundem, G.7
Pipinikas, C.P.8
Zamora, J.9
Raine, K.10
Menzies, A.11
Roman-Garcia, P.12
Fullam, A.13
Gerstung, M.14
Shlien, A.15
Tarpey, P.S.16
Papaemmanuil, E.17
Knappskog, S.18
Van Loo, P.19
Ramakrishna, M.20
Davies, H.R.21
Marshall, J.22
Wedge, D.C.23
Teague, J.W.24
Butler, A.P.25
Nik-Zainal, S.26
Alexandrov, L.27
Behjati, S.28
Yates, L.R.29
Bolli, N.30
Mudie, L.31
Hardy, C.32
Martin, S.33
McLaren, S.34
O'Meara, S.35
Anderson, E.36
Maddison, M.37
Gamble, S.38
Group, I.B.C.39
Group, I.B.C.40
Group, I.P.C.41
Foster, C.42
Warren, A.Y.43
Whitaker, H.44
Brewer, D.45
Eeles, R.46
Cooper, C.47
Neal, D.48
Lynch, A.G.49
Visakorpi, T.ET-AL50
more..
-
92
-
-
55549145080
-
Endogenous retroviruses and cancer
-
Ruprecht K., Mayer J., Sauter M., Roemer K., Mueller-Lantzsch N. Endogenous retroviruses and cancer. Cell Mol Life Sci 2008, 65:3366-3382.
-
(2008)
Cell Mol Life Sci
, vol.65
, pp. 3366-3382
-
-
Ruprecht, K.1
Mayer, J.2
Sauter, M.3
Roemer, K.4
Mueller-Lantzsch, N.5
-
93
-
-
84875698271
-
Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma
-
Shukla R., Upton K.R., Munoz-Lopez M., Gerhardt D.J., Fisher M.E., Nguyen T., Brennan P.M., Baillie J.K., Collino A., Ghisletti S., Sinha S., Iannelli F., Radaelli E., Dos Santos A., Rapoud D., Guettier C., Samuel D., Natoli G., Carninci P., Ciccarelli F.D., Garcia-Perez J.L., Faivre J., Faulkner G.J. Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma. Cell 2013, 153:101-111.
-
(2013)
Cell
, vol.153
, pp. 101-111
-
-
Shukla, R.1
Upton, K.R.2
Munoz-Lopez, M.3
Gerhardt, D.J.4
Fisher, M.E.5
Nguyen, T.6
Brennan, P.M.7
Baillie, J.K.8
Collino, A.9
Ghisletti, S.10
Sinha, S.11
Iannelli, F.12
Radaelli, E.13
Dos Santos, A.14
Rapoud, D.15
Guettier, C.16
Samuel, D.17
Natoli, G.18
Carninci, P.19
Ciccarelli, F.D.20
Garcia-Perez, J.L.21
Faivre, J.22
Faulkner, G.J.23
more..
-
94
-
-
84896078786
-
Viral-human chimeric transcript predisposes risk to liver cancer development and progression
-
Lau C.C., Sun T., Ching A.K., He M., Li J.W., Wong A.M., Co N.N., Chan A.W., Li P.S., Lung R.W., Tong J.H., Lai P.B., Chan H.L., To K.F., Chan T.F., Wong N. Viral-human chimeric transcript predisposes risk to liver cancer development and progression. Cancer Cell 2014, 25:335-349.
-
(2014)
Cancer Cell
, vol.25
, pp. 335-349
-
-
Lau, C.C.1
Sun, T.2
Ching, A.K.3
He, M.4
Li, J.W.5
Wong, A.M.6
Co, N.N.7
Chan, A.W.8
Li, P.S.9
Lung, R.W.10
Tong, J.H.11
Lai, P.B.12
Chan, H.L.13
To, K.F.14
Chan, T.F.15
Wong, N.16
-
95
-
-
84956691878
-
CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors
-
Hashimoto K., Suzuki A.M., Dos Santos A., Desterke C., Collino A., Ghisletti S., Braun E., Bonetti A., Fort A., Qin X.Y., Radaelli E., Kaczkowski B., Forrest A.R., Kojima S., Samuel D., Natoli G., Buendia M.A., Faivre J., Carninci P. CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors. Genome Res 2015, 25:1812-1824.
-
(2015)
Genome Res
, vol.25
, pp. 1812-1824
-
-
Hashimoto, K.1
Suzuki, A.M.2
Dos Santos, A.3
Desterke, C.4
Collino, A.5
Ghisletti, S.6
Braun, E.7
Bonetti, A.8
Fort, A.9
Qin, X.Y.10
Radaelli, E.11
Kaczkowski, B.12
Forrest, A.R.13
Kojima, S.14
Samuel, D.15
Natoli, G.16
Buendia, M.A.17
Faivre, J.18
Carninci, P.19
-
96
-
-
0018857680
-
Selfish DNA: the ultimate parasite
-
Orgel L.E., Crick F.H. Selfish DNA: the ultimate parasite. Nature 1980, 284:604-607.
-
(1980)
Nature
, vol.284
, pp. 604-607
-
-
Orgel, L.E.1
Crick, F.H.2
-
97
-
-
73449104745
-
The post-Darwinist rhizome of life
-
Raoult D. The post-Darwinist rhizome of life. Lancet 2010, 375:104-105.
-
(2010)
Lancet
, vol.375
, pp. 104-105
-
-
Raoult, D.1
-
98
-
-
84940662313
-
Host biology in light of the microbiome: ten principles of holobionts and hologenomes
-
Bordenstein S.R., Theis K.R. Host biology in light of the microbiome: ten principles of holobionts and hologenomes. PLoS Biol 2015, 13:e1002226.
-
(2015)
PLoS Biol
, vol.13
, pp. e1002226
-
-
Bordenstein, S.R.1
Theis, K.R.2
-
99
-
-
84920446243
-
HIV infection en route to endogenization: two cases
-
Colson P., Ravaux I., Tamalet C., Glazunova O., Baptiste E., Chabriere E., Wiedemann A., Lacabaratz C., Chefrour M., Picard C., Stein A., Levy Y., Raoult D. HIV infection en route to endogenization: two cases. Clin Microbiol Infect 2014, 20:1280-1288.
-
(2014)
Clin Microbiol Infect
, vol.20
, pp. 1280-1288
-
-
Colson, P.1
Ravaux, I.2
Tamalet, C.3
Glazunova, O.4
Baptiste, E.5
Chabriere, E.6
Wiedemann, A.7
Lacabaratz, C.8
Chefrour, M.9
Picard, C.10
Stein, A.11
Levy, Y.12
Raoult, D.13
-
100
-
-
84857468000
-
Production of virus-derived ping-pong-dependent piRNA-like small RNAs in the mosquito soma
-
Morazzani E.M., Wiley M.R., Murreddu M.G., Adelman Z.N., Myles K.M. Production of virus-derived ping-pong-dependent piRNA-like small RNAs in the mosquito soma. PLoS Pathog 2012, 8:e1002470.
-
(2012)
PLoS Pathog
, vol.8
, pp. e1002470
-
-
Morazzani, E.M.1
Wiley, M.R.2
Murreddu, M.G.3
Adelman, Z.N.4
Myles, K.M.5
-
101
-
-
84948447883
-
Genome-wide inactivation of porcine endogenous retroviruses (PERVs)
-
Yang L., Guell M., Niu D., George H., Lesha E., Grishin D., Aach J., Shrock E., Xu W., Poci J., Cortazio R., Wilkinson R.A., Fishman J.A., Church G. Genome-wide inactivation of porcine endogenous retroviruses (PERVs). Science 2015, 350:1101-1104.
-
(2015)
Science
, vol.350
, pp. 1101-1104
-
-
Yang, L.1
Guell, M.2
Niu, D.3
George, H.4
Lesha, E.5
Grishin, D.6
Aach, J.7
Shrock, E.8
Xu, W.9
Poci, J.10
Cortazio, R.11
Wilkinson, R.A.12
Fishman, J.A.13
Church, G.14
-
102
-
-
84880376915
-
Controlled insertional mutagenesis using a LINE-1 (ORFeus) gene-trap mouse model
-
O'Donnell K.A., An W., Schrum C.T., Wheelan S.J., Boeke J.D. Controlled insertional mutagenesis using a LINE-1 (ORFeus) gene-trap mouse model. Proc Natl Acad Sci U S A 2013, 110:E2706-E2713.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. E2706-E2713
-
-
O'Donnell, K.A.1
An, W.2
Schrum, C.T.3
Wheelan, S.J.4
Boeke, J.D.5
-
104
-
-
81255184397
-
Retrofitting the genome: L1 extinction follows endogenous retroviral expansion in a group of muroid rodents
-
Erickson I.K., Cantrell M.A., Scott L., Wichman H.A. Retrofitting the genome: L1 extinction follows endogenous retroviral expansion in a group of muroid rodents. J Virol 2011, 85:12315-12323.
-
(2011)
J Virol
, vol.85
, pp. 12315-12323
-
-
Erickson, I.K.1
Cantrell, M.A.2
Scott, L.3
Wichman, H.A.4
-
105
-
-
84881562102
-
Comprehensive analysis of endogenous bornavirus-like elements in eukaryote genomes
-
Horie M., Kobayashi Y., Suzuki Y., Tomonaga K. Comprehensive analysis of endogenous bornavirus-like elements in eukaryote genomes. Philos Trans R Soc Lond B Biol Sci 2013, 368:20120499.
-
(2013)
Philos Trans R Soc Lond B Biol Sci
, vol.368
, pp. 20120499
-
-
Horie, M.1
Kobayashi, Y.2
Suzuki, Y.3
Tomonaga, K.4
-
106
-
-
84927136066
-
Ubiquitous l1 mosaicism in hippocampal neurons
-
Upton K.R., Gerhardt D.J., Jesuadian J.S., Richardson S.R., Sanchez-Luque F.J., Bodea G.O., Ewing A.D., Salvador-Palomeque C., van der Knaap M.S., Brennan P.M., Vanderver A., Faulkner G.J. Ubiquitous l1 mosaicism in hippocampal neurons. Cell 2015, 161:228-239.
-
(2015)
Cell
, vol.161
, pp. 228-239
-
-
Upton, K.R.1
Gerhardt, D.J.2
Jesuadian, J.S.3
Richardson, S.R.4
Sanchez-Luque, F.J.5
Bodea, G.O.6
Ewing, A.D.7
Salvador-Palomeque, C.8
van der Knaap, M.S.9
Brennan, P.M.10
Vanderver, A.11
Faulkner, G.J.12
-
107
-
-
84876844698
-
Aicardi-Goutieres syndrome
-
Crow Y.J. Aicardi-Goutieres syndrome. Handb Clin Neurol 2013, 113:1629-1635.
-
(2013)
Handb Clin Neurol
, vol.113
, pp. 1629-1635
-
-
Crow, Y.J.1
-
108
-
-
84921325776
-
Targeting of type I interferon in systemic autoimmune diseases
-
Crow M.K., Olferiev M., Kirou K.A. Targeting of type I interferon in systemic autoimmune diseases. Transl Res 2015, 165:296-305.
-
(2015)
Transl Res
, vol.165
, pp. 296-305
-
-
Crow, M.K.1
Olferiev, M.2
Kirou, K.A.3
-
110
-
-
84949257409
-
Distinguishing the immunostimulatory properties of noncoding RNAs expressed in cancer cells
-
Tanne A., Muniz L.R., Puzio-Kuter A., Leonova K.I., Gudkov A.V., Ting D.T., Monasson R., Cocco S., Levine A.J., Bhardwaj N., Greenbaum B.D. Distinguishing the immunostimulatory properties of noncoding RNAs expressed in cancer cells. Proc Natl Acad Sci U S A 2015, 112:15154-15159.
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, pp. 15154-15159
-
-
Tanne, A.1
Muniz, L.R.2
Puzio-Kuter, A.3
Leonova, K.I.4
Gudkov, A.V.5
Ting, D.T.6
Monasson, R.7
Cocco, S.8
Levine, A.J.9
Bhardwaj, N.10
Greenbaum, B.D.11
|