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Volumn 32, Issue 1, 2015, Pages 109-120

Proliferation of Endogenous Retroviruses in the Early Stages of a Host Germ Line Invasion

Author keywords

Insertional polymorphisms; Koala; Koala retrovirus; Long terminal repeats; Sire dam progeny triad

Indexed keywords

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARTICLE; CELL INVASION; ENDOGENOUS RETROVIRUS; GENE LOCUS; GENE SEQUENCE; GERM LINE; HOST; KOALA; LONG TERMINAL REPEAT; MOLECULAR CLOCK; NONHUMAN; PROGENY; VIRUS GENOME; ANIMAL; AUSTRALIA; CLASSIFICATION; GENETICS; GENOME; GERM CELL; HAPLOTYPE; HUMAN; MOLECULAR EVOLUTION; PHYLOGENY; PHYSIOLOGY; PROVIRUS; VIROLOGY; VIRUS DNA CELL DNA INTERACTION;

EID: 84922382727     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msu275     Document Type: Article
Times cited : (67)

References (66)
  • 1
    • 0032377357 scopus 로고    scopus 로고
    • Approximate is better than "exact" for interval estimation of binomial proportions
    • Agresti A, Coull BA. 1998. Approximate is better than "exact" for interval estimation of binomial proportions. Am Stat. 52: 119-126.
    • (1998) Am Stat. , vol.52 , pp. 119-126
    • Agresti, A.1    Coull, B.A.2
  • 5
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • Bandelt HJ, Forster P, Rohl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol. 16: 37-48.
    • (1999) Mol Biol Evol. , vol.16 , pp. 37-48
    • Bandelt, H.J.1    Forster, P.2    Rohl, A.3
  • 6
    • 84886061966 scopus 로고    scopus 로고
    • Evidence for a retroviral insertion in trpm1 as the cause of congenital stationary night blindness and leopard complex spotting in the horse
    • Bellone RR, Holl H, Setaluri V, Devi S,Maddodi N, Archer S, Sandmeyer L,Ludwig A, Foerster D, PruvostM, et al. 2013. Evidence for a retroviral insertion in TRPM1 as the cause of congenital stationary night blindness and leopard complex spotting in the horse. PLoS One 8: e78280.
    • (2013) PLoS One. , vol.8 , pp. e78280
    • Bellone, R.R.1    Holl, H.2    Setaluri, V.3    Devi, S.4    Maddodi, N.5    Archer, S.6    Sandmeyer, L.7    Ludwig, A.8    Foerster, D.9    Pruvost, M.10
  • 8
    • 0002075936 scopus 로고    scopus 로고
    • Retrotransposons, endogenous retroviruses, and the evolution of retroelements
    • Coffin JM, Hughes SH, Varmus HE, editors. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press
    • Boeke JD, Stoye JP. 1997. Retrotransposons, endogenous retroviruses, and the evolution of retroelements. In: Coffin JM, Hughes SH, Varmus HE, editors. Retroviruses. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press. p. 343-436.
    • (1997) Retroviruses. , pp. 343-436
    • Boeke, J.D.1    Stoye, J.P.2
  • 9
    • 0036468355 scopus 로고    scopus 로고
    • The human zoo: Endogenous retroviruses in the human genome
    • Bromham L. 2002. The human zoo: endogenous retroviruses in the human genome. Trends Ecol Evol. 17: 91-97.
    • (2002) Trends Ecol Evol. , vol.17 , pp. 91-97
    • Bromham, L.1
  • 10
    • 33750356627 scopus 로고    scopus 로고
    • At least 50% of human-specific herv-k (hml-2) long terminal repeats serve in vivo as active promoters for host nonrepetitive dna transcription
    • Buzdin A, Kovalskaya-Alexandrova E, Gogvadze E, Sverdlov E. 2006. At least 50% of human-specific HERV-K (HML-2) long terminal repeats serve in vivo as active promoters for host nonrepetitive DNA transcription. J Virol. 80: 10752-10762.
    • (2006) J Virol. , vol.80 , pp. 10752-10762
    • Buzdin, A.1    Kovalskaya-Alexandrova, E.2    Gogvadze, E.3    Sverdlov, E.4
  • 12
    • 16644394407 scopus 로고    scopus 로고
    • Evolution of retroviruses: Fossils in our dna
    • Coffin JM. 2004. Evolution of retroviruses: fossils in our DNA. Proc Am Philos Soc. 148: 264-280.
    • (2004) Proc Am Philos Soc. , vol.148 , pp. 264-280
    • Coffin, J.M.1
  • 14
    • 36048929469 scopus 로고    scopus 로고
    • Transspecies transmissions of retroviruses: New cases
    • Denner J. 2007. Transspecies transmissions of retroviruses: new cases. Virology 369: 229-233.
    • (2007) Virology. , vol.369 , pp. 229-233
    • Denner, J.1
  • 15
    • 84922357504 scopus 로고    scopus 로고
    • Department of the Environment, Canberra. 2014. Phascolarctus cinereus (combined populations of QLD, NSW and the ACT) in Species Profile and Threats Database [Internet]. [cited 2014 Jun 26]. Available from
    • Department of the Environment, Canberra. 2014. Phascolarctus cinereus (combined populations of QLD, NSW and the ACT) in Species Profile and Threats Database [Internet]. [cited 2014 Jun 26]. Available from: http: //www.environment.gov.au/cgi-bin/sprat/public/ publicspecies.pl?taxon-id=85104.
  • 16
    • 33646721361 scopus 로고    scopus 로고
    • Transspecies transmission of the endogenous koala retrovirus
    • Fiebig U, Hartmann MG, Bannert N, Kurth R, Denner J. 2006. Transspecies transmission of the endogenous koala retrovirus. J Virol. 80: 5651-5654.
    • (2006) J Virol. , vol.80 , pp. 5651-5654
    • Fiebig, U.1    Hartmann, M.G.2    Bannert, N.3    Kurth, R.4    Denner, J.5
  • 18
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Goecks J, Nekrutenko A, Taylor J. 2010. Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 11: R86.
    • (2010) Genome Biol. , vol.11 , pp. R86
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 19
    • 0034004490 scopus 로고    scopus 로고
    • The nucleotide sequence of koala (phascolarctos cinereus) retrovirus: A novel type c endogenous virus related to gibbon ape leukemia virus
    • Hanger JJ, Bromham LD,McKee JJ, O'Brien TM, RobinsonWF. 2000. The nucleotide sequence of koala (Phascolarctos cinereus) retrovirus: A novel type C endogenous virus related to gibbon ape leukemia virus. J Virol. 74: 4264-4272.
    • (2000) J Virol. , vol.74 , pp. 4264-4272
    • Hanger, J.J.1    Bromham, L.D.2    McKee, J.J.3    O'Brien, T.M.4    Robinson, W.F.5
  • 20
    • 0028172141 scopus 로고
    • Direct dna sequencing of pcr-amplified vector inserts following enzymatic degradation of primer and dntps
    • Hanke M, Wink M. 1994. Direct DNA sequencing of PCR-amplified vector inserts following enzymatic degradation of primer and dNTPs. Biotechniques 17: 858-860.
    • (1994) Biotechniques. , vol.17 , pp. 858-860
    • Hanke, M.1    Wink, M.2
  • 22
    • 0020325010 scopus 로고
    • Germ-line mulv reintegrations in akr/j mice
    • Herr W, GilbertW. 1982. Germ-line MuLV reintegrations in AKR/J mice. Nature 296: 865-868.
    • (1982) Nature. , vol.296 , pp. 865-868
    • Herr, W.1    Gilbert, W.2
  • 24
    • 0030119446 scopus 로고    scopus 로고
    • Low genetic variability of the koala phascolarctos cinereus in southeastern australia following a severe population bottleneck
    • Houlden BA, England PR, Taylor AC, Greville WD, Sherwin WB. 1996. Low genetic variability of the koala Phascolarctos cinereus in southeastern Australia following a severe population bottleneck. Mol Ecol. 5: 269-281.
    • (1996) Mol Ecol. , vol.5 , pp. 269-281
    • Houlden, B.A.1    England, P.R.2    Taylor, A.C.3    Greville, W.D.4    Sherwin, W.B.5
  • 26
    • 0022310680 scopus 로고
    • High frequency germline acquisition of ecotropic mulv proviruses in swr/j-rf/j hybrid mice
    • Jenkins NA, Copeland NG. 1985. High frequency germline acquisition of ecotropic MuLV proviruses in SWR/J-RF/J hybrid mice. Cell 43: 811-819.
    • (1985) Cell. , vol.43 , pp. 811-819
    • Jenkins, N.A.1    Copeland, N.G.2
  • 27
    • 0019949189 scopus 로고
    • Organization, distribution, and stability of endogenous ecotropic murine leukemia virus dna sequences in chromosomes of mus musculus
    • Jenkins NA, Copeland NG, Taylor BA, Lee BK. 1982. Organization, distribution, and stability of endogenous ecotropic murine leukemia virus DNA sequences in chromosomes of Mus musculus. J Virol. 43: 26-36.
    • (1982) J Virol. , vol.43 , pp. 26-36
    • Jenkins, N.A.1    Copeland, N.G.2    Taylor, B.A.3    Lee, B.K.4
  • 28
    • 0033621090 scopus 로고    scopus 로고
    • Constructing primate phylogenies from ancient retrovirus sequences
    • Johnson WE, Coffin JM. 1999. Constructing primate phylogenies from ancient retrovirus sequences. Proc Natl Acad Sci U S A. 96: 10254-10260.
    • (1999) Proc Natl Acad Sci U S A. , vol.96 , pp. 10254-10260
    • Johnson, W.E.1    Coffin, J.M.2
  • 29
    • 0025666927 scopus 로고
    • Generation of diversity in retroviruses
    • Katz RA, Skalka AM. 1990. Generation of diversity in retroviruses. Annu Rev Genet. 24: 409-445.
    • (1990) Annu Rev Genet. , vol.24 , pp. 409-445
    • Katz, R.A.1    Skalka, A.M.2
  • 33
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with bowtie 2
    • Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods. 9: 357-359.
    • (2012) Nat Methods. , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 35
    • 0023256559 scopus 로고
    • Slipped-strand mispairing: A major mechanism for dna sequence evolution
    • Levinson G, Gutman GA. 1987. Slipped-strand mispairing: A major mechanism for DNA sequence evolution. Mol Biol Evol. 4: 203-221.
    • (1987) Mol Biol Evol. , vol.4 , pp. 203-221
    • Levinson, G.1    Gutman, G.A.2
  • 36
    • 79952327304 scopus 로고    scopus 로고
    • Improved integration time estimation of endogenous retroviruses with phylogenetic data
    • Martins H, Villesen P. 2011. Improved integration time estimation of endogenous retroviruses with phylogenetic data. PLoS One 6: e14745.
    • (2011) PLoS One. , vol.6 , pp. e14745
    • Martins, H.1    Villesen, P.2
  • 37
    • 63149179208 scopus 로고    scopus 로고
    • A phylogeny and timescale for the living genera of kangaroos and kin (macropodiformes: Marsupialia) based on nuclear dna sequences
    • Meredith RW, Westerman M, Springer MS. 2009. A phylogeny and timescale for the living genera of kangaroos and kin (Macropodiformes: Marsupialia) based on nuclear DNA sequences. Aust J Zool. 56: 395-410.
    • (2009) Aust J Zool. , vol.56 , pp. 395-410
    • Meredith, R.W.1    Westerman, M.2    Springer, M.S.3
  • 39
    • 34250813062 scopus 로고    scopus 로고
    • Insertional polymorphisms: A new lease of life for endogenous retroviruses in human disease
    • Moyes D, Griffiths DJ, Venables PJ. 2007. Insertional polymorphisms: A new lease of life for endogenous retroviruses in human disease. Trends Genet. 23: 326-333.
    • (2007) Trends Genet. , vol.23 , pp. 326-333
    • Moyes, D.1    Griffiths, D.J.2    Venables, P.J.3
  • 40
    • 10644261240 scopus 로고    scopus 로고
    • Evolutionary spread and recombination of porcine endogenous retroviruses in the suiformes
    • Niebert M, Tonjes RR. 2005. Evolutionary spread and recombination of porcine endogenous retroviruses in the suiformes. J Virol. 79: 649-654.
    • (2005) J Virol. , vol.79 , pp. 649-654
    • Niebert, M.1    Tonjes, R.R.2
  • 41
    • 77955658684 scopus 로고    scopus 로고
    • Evolutionary dynamics of endogenous feline leukemia virus proliferation among species of the domestic cat lineage
    • Polani S, Roca AL, Rosensteel BB, Kolokotronis SO, Bar-Gal GK. 2010. Evolutionary dynamics of endogenous feline leukemia virus proliferation among species of the domestic cat lineage. Virology 405: 397-407.
    • (2010) Virology. , vol.405 , pp. 397-407
    • Polani, S.1    Roca, A.L.2    Rosensteel, B.B.3    Kolokotronis, S.O.4    Bar-Gal, G.K.5
  • 42
    • 50049089040 scopus 로고    scopus 로고
    • A high-throughput genome-walking method and its use for cloning unknown flanking sequences
    • Reddy PS, Mahanty S, Kaul T, Nair S, Sopory SK, Reddy MK. 2008. A high-throughput genome-walking method and its use for cloning unknown flanking sequences. Anal Biochem. 381: 248-253.
    • (2008) Anal Biochem. , vol.381 , pp. 248-253
    • Reddy, P.S.1    Mahanty, S.2    Kaul, T.3    Nair, S.4    Sopory, S.K.5    Reddy, M.K.6
  • 43
    • 80051783754 scopus 로고    scopus 로고
    • Genome sequence of an australian kangaroo, macropus eugenii, provides insight into the evolution of mammalian reproduction and development
    • Renfree MB, Papenfuss AT, Deakin JE, Lindsay J, Heider T, Belov K, Rens, Waters PD, Pharo EA, Shaw G, et al. 2011. Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biol. 12: R81.
    • (2011) Genome Biol. , vol.12 , pp. R81
    • Renfree, M.B.1    Papenfuss, A.T.2    Deakin, J.E.3    Lindsay, J.4    Heider, T.5    Belov, K.6    Rens, W.P.D.7    Pharo, E.A.8    Shaw, G.9
  • 45
    • 1842431481 scopus 로고    scopus 로고
    • Genomically intact endogenous feline leukemia viruses of recent origin
    • Roca AL, Pecon-Slattery J, O'Brien SJ. 2004. Genomically intact endogenous feline leukemia viruses of recent origin. J Virol. 78: 4370-4375.
    • (2004) J Virol. , vol.78 , pp. 4370-4375
    • Roca, A.L.1    Pecon-Slattery, J.2    O'Brien, S.J.3
  • 46
    • 0019051840 scopus 로고
    • Germ-line reinsertions of akr murine leukemia virus genomes in akv-1 congenic mice
    • Rowe WP, Kozak CA. 1980. Germ-line reinsertions of AKR murine leukemia virus genomes in Akv-1 congenic mice. Proc Natl Acad Sci U S A. 77: 4871-4874.
    • (1980) Proc Natl Acad Sci U S A. , vol.77 , pp. 4871-4874
    • Rowe, W.P.1    Kozak, C.A.2
  • 47
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the www for general users and for biologist programmers
    • Rozen S, Skaletsky H. 2000. Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol. 132: 365-386.
    • (2000) Methods Mol Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 48
    • 84900789566 scopus 로고    scopus 로고
    • Development of 14 microsatellite markers in the queensland koala (phascolarctos cinereus adustus) using next generation sequencing technology
    • Ruiz-Rodriguez C, Ishida Y, Greenwood A, Roca A. 2014. Development of 14 microsatellite markers in the Queensland koala (Phascolarctos cinereus adustus) using next generation sequencing technology. Conserv Genet Resour. 6: 429-431.
    • (2014) Conserv Genet Resour. , vol.6 , pp. 429-431
    • Ruiz-Rodriguez, C.1    Ishida, Y.2    Greenwood, A.3    Roca, A.4
  • 50
    • 84876338753 scopus 로고    scopus 로고
    • Construction and characterization of an infectious molecular clone of koala retrovirus
    • Shojima T, Hoshino S, Abe M, Yasuda J, Shogen H, Kobayashi T,Miyazawa T. 2013. Construction and characterization of an infectious molecular clone of koala retrovirus. J Virol. 87: 5081-5088.
    • (2013) J Virol. , vol.87 , pp. 5081-5088
    • Shojima, T.1    Hoshino, S.2    Abe, M.3    Yasuda, J.4    Shogen, H.5    Kobayashi, T.6    Miyazawa, T.7
  • 54
    • 33847727027 scopus 로고    scopus 로고
    • Koala retrovirus: A genome invasion in real time
    • Stoye JP. 2006. Koala retrovirus: A genome invasion in real time. Genome Biol. 7: 241.
    • (2006) Genome Biol. , vol.7 , pp. 241
    • Stoye, J.P.1
  • 55
    • 84861188188 scopus 로고    scopus 로고
    • Studies of endogenous retroviruses reveal a continuing evolutionary saga
    • Stoye JP. 2012. Studies of endogenous retroviruses reveal a continuing evolutionary saga. Nat Rev Microbiol. 10: 395-406.
    • (2012) Nat Rev Microbiol. , vol.10 , pp. 395-406
    • Stoye, J.P.1
  • 56
    • 14744286044 scopus 로고    scopus 로고
    • Real-time reverse transcriptase pcr for the endogenous koala retrovirus reveals an association between plasma viral load and neoplastic disease in koalas
    • Tarlinton R, Meers J, Hanger J, Young P. 2005. Real-time reverse transcriptase PCR for the endogenous koala retrovirus reveals an association between plasma viral load and neoplastic disease in koalas. J Gen Virol. 86: 783-787.
    • (2005) J Gen Virol. , vol.86 , pp. 783-787
    • Tarlinton, R.1    Meers, J.2    Hanger, J.3    Young, P.4
  • 57
    • 55549093726 scopus 로고    scopus 로고
    • Biology and evolution of the endogenous koala retrovirus
    • Tarlinton R, Meers J, Young P. 2008. Biology and evolution of the endogenous koala retrovirus. Cell Mol Life Sci. 65: 3413-3421.
    • (2008) Cell Mol Life Sci. , vol.65 , pp. 3413-3421
    • Tarlinton, R.1    Meers, J.2    Young, P.3
  • 59
    • 33745972414 scopus 로고    scopus 로고
    • Retroviral invasion of the koala genome
    • Tarlinton RE, Meers J, Young PR. 2006. Retroviral invasion of the koala genome. Nature 442: 79-81.
    • (2006) Nature. , vol.442 , pp. 79-81
    • Tarlinton, R.E.1    Meers, J.2    Young, P.R.3
  • 60
    • 0026075895 scopus 로고
    • Conservation genetics of the koala (phascolarctos cinereus) ii limited variability in minisatellite dna-sequences
    • Taylor AC, Graves JAM, Murray ND, Sherwin WB. 1991. Conservation genetics of the koala (Phascolarctos cinereus) II. Limited variability in minisatellite DNA-sequences. Biochem Genet. 29: 355-363.
    • (1991) Biochem Genet. , vol.29 , pp. 355-363
    • Taylor, A.C.1    Graves, J.A.M.2    Murray, N.D.3    Sherwin, W.B.4
  • 64
    • 84898673851 scopus 로고    scopus 로고
    • On the concept and elucidation of endogenous retroviruses
    • Weiss RA. 2013. On the concept and elucidation of endogenous retroviruses. Philos Trans R Soc Lond B Biol Sci. 368: 20120494.
    • (2013) Philos Trans R Soc Lond B Biol Sci. , vol.368 , pp. 20120494
    • Weiss, R.A.1


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