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Volumn 1854, Issue 6, 2015, Pages 559-580

Proteomic developments in the analysis of formalin-fixed tissue

Author keywords

Cancer; FFPE; Formalin; Proteomics; Tissue; Tumour

Indexed keywords

FORMALDEHYDE; PROTEIN; FIXATIVE; GLYCOPROTEIN; PHOSPHOPROTEIN; TUMOR PROTEIN;

EID: 84961328734     PISSN: 15709639     EISSN: 18781454     Source Type: Journal    
DOI: 10.1016/j.bbapap.2014.10.003     Document Type: Review
Times cited : (97)

References (121)
  • 5
    • 33750092685 scopus 로고    scopus 로고
    • Mass spectrometric analysis of formalin-fixed paraffin-embedded tissue: Unlocking the proteome within
    • B.L. Hood, T.P. Conrads, and T.D. Veenstra Mass spectrometric analysis of formalin-fixed paraffin-embedded tissue: unlocking the proteome within Proteomics 6 2006 4106 4114
    • (2006) Proteomics , vol.6 , pp. 4106-4114
    • Hood, B.L.1    Conrads, T.P.2    Veenstra, T.D.3
  • 7
    • 70349136284 scopus 로고    scopus 로고
    • 2-D PAGE and MS analysis of proteins from formalin-fixed, paraffin-embedded tissues
    • M.F. Addis, A. Tanca, D. Pagnozzi, S. Rocca, and S. Uzzau 2-D PAGE and MS analysis of proteins from formalin-fixed, paraffin-embedded tissues Proteomics 9 2009 4329 4339
    • (2009) Proteomics , vol.9 , pp. 4329-4339
    • Addis, M.F.1    Tanca, A.2    Pagnozzi, D.3    Rocca, S.4    Uzzau, S.5
  • 8
    • 84920363781 scopus 로고    scopus 로고
    • MALDI mass spectrometry imaging of formalin-fixed paraffin-embedded tissues in clinical research
    • K. Gorzolka, and A. Walch MALDI mass spectrometry imaging of formalin-fixed paraffin-embedded tissues in clinical research Histol. Histopathol. 29 2014
    • (2014) Histol. Histopathol. , vol.29
    • Gorzolka, K.1    Walch, A.2
  • 11
    • 27144544744 scopus 로고    scopus 로고
    • Identification of proteins from formalin-fixed paraffin-embedded cells by LC-MS/MS
    • D.K. Crockett, Z. Lin, C.P. Vaughn, M.S. Lim, and K.S. Elenitoba-Johnson Identification of proteins from formalin-fixed paraffin-embedded cells by LC-MS/MS Lab. Invest. 85 2005 1405 1415
    • (2005) Lab. Invest. , vol.85 , pp. 1405-1415
    • Crockett, D.K.1    Lin, Z.2    Vaughn, C.P.3    Lim, M.S.4    Elenitoba-Johnson, K.S.5
  • 13
    • 0030998145 scopus 로고    scopus 로고
    • Antigen retrieval immunohistochemistry: Past, present, and future
    • S.R. Shi, R.J. Cote, and C.R. Taylor Antigen retrieval immunohistochemistry: past, present, and future J. Histochem. Cytochem. 45 1997 327 343
    • (1997) J. Histochem. Cytochem. , vol.45 , pp. 327-343
    • Shi, S.R.1    Cote, R.J.2    Taylor, C.R.3
  • 14
    • 61849114172 scopus 로고    scopus 로고
    • Evaluation of archival time on shotgun proteomics of formalin-fixed and paraffin-embedded tissues
    • B.M. Balgley, T. Guo, K. Zhao, X. Fang, F.A. Tavassoli, and C.S. Lee Evaluation of archival time on shotgun proteomics of formalin-fixed and paraffin-embedded tissues J. Proteome Res. 8 2009 917 925
    • (2009) J. Proteome Res. , vol.8 , pp. 917-925
    • Balgley, B.M.1    Guo, T.2    Zhao, K.3    Fang, X.4    Tavassoli, F.A.5    Lee, C.S.6
  • 17
    • 84859965675 scopus 로고    scopus 로고
    • Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues
    • S. Magdeldin, and T. Yamamoto Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues Proteomics 12 2012 1045 1058
    • (2012) Proteomics , vol.12 , pp. 1045-1058
    • Magdeldin, S.1    Yamamoto, T.2
  • 18
    • 44149119998 scopus 로고    scopus 로고
    • Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions
    • J. Toews, J.C. Rogalski, T.J. Clark, and J. Kast Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions Anal. Chim. Acta. 618 2008 168 183
    • (2008) Anal. Chim. Acta. , vol.618 , pp. 168-183
    • Toews, J.1    Rogalski, J.C.2    Clark, T.J.3    Kast, J.4
  • 19
    • 46049096567 scopus 로고    scopus 로고
    • Modeling formalin fixation and histological processing with ribonuclease A: Effects of ethanol dehydration on reversal of formaldehyde cross-links
    • C.B. Fowler, T.J. O'Leary, and J.T. Mason Modeling formalin fixation and histological processing with ribonuclease A: effects of ethanol dehydration on reversal of formaldehyde cross-links Lab. Invest. 88 2008 785 791
    • (2008) Lab. Invest. , vol.88 , pp. 785-791
    • Fowler, C.B.1    O'Leary, T.J.2    Mason, J.T.3
  • 20
    • 33845787470 scopus 로고    scopus 로고
    • Heat-induced antigen retrieval: Mechanisms and application to histochemistry
    • S. Yamashita Heat-induced antigen retrieval: mechanisms and application to histochemistry Prog. Histochem. Cytochem. 41 2007 141 200
    • (2007) Prog. Histochem. Cytochem. , vol.41 , pp. 141-200
    • Yamashita, S.1
  • 21
    • 0025829609 scopus 로고
    • Antigen retrieval in formalin-fixed, paraffin-embedded tissues: An enhancement method for immunohistochemical staining based on microwave oven heating of tissue sections
    • S.R. Shi, M.E. Key, and K.L. Kalra Antigen retrieval in formalin-fixed, paraffin-embedded tissues: an enhancement method for immunohistochemical staining based on microwave oven heating of tissue sections J. Histochem. Cytochem. 39 1991 741 748
    • (1991) J. Histochem. Cytochem. , vol.39 , pp. 741-748
    • Shi, S.R.1    Key, M.E.2    Kalra, K.L.3
  • 22
    • 84865577612 scopus 로고    scopus 로고
    • Advancing formaldehyde cross-linking towards quantitative proteomic applications
    • C. Klockenbusch, J.E. O'Hara, and J. Kast Advancing formaldehyde cross-linking towards quantitative proteomic applications Anal. Bioanal. Chem. 404 2012 1057 1067
    • (2012) Anal. Bioanal. Chem. , vol.404 , pp. 1057-1067
    • Klockenbusch, C.1    O'Hara, J.E.2    Kast, J.3
  • 23
    • 0027154280 scopus 로고
    • Immunoblot analysis of the placental form of glutathione S-transferase in protein extracted from paraffin-embedded human glioma tissue
    • A. Hara, N. Sakai, H. Yamada, N. Yoshimi, T. Tanaka, and H. Mori Immunoblot analysis of the placental form of glutathione S-transferase in protein extracted from paraffin-embedded human glioma tissue J. Cancer Res. Clin. Oncol. 119 1993 493 496
    • (1993) J. Cancer Res. Clin. Oncol. , vol.119 , pp. 493-496
    • Hara, A.1    Sakai, N.2    Yamada, H.3    Yoshimi, N.4    Tanaka, T.5    Mori, H.6
  • 24
    • 25444454390 scopus 로고    scopus 로고
    • Influence of tissue fixation on the microextraction and identification of amyloid proteins
    • C. Rocken, and S. Wilhelm Influence of tissue fixation on the microextraction and identification of amyloid proteins J. Lab. Clin. Med. 146 2005 244 250
    • (2005) J. Lab. Clin. Med. , vol.146 , pp. 244-250
    • Rocken, C.1    Wilhelm, S.2
  • 25
    • 33646698472 scopus 로고    scopus 로고
    • Protein extraction from formalin-fixed, paraffin-embedded tissue sections: Quality evaluation by mass spectrometry
    • S.R. Shi, C. Liu, B.M. Balgley, C. Lee, and C.R. Taylor Protein extraction from formalin-fixed, paraffin-embedded tissue sections: quality evaluation by mass spectrometry J. Histochem. Cytochem. 54 2006 739 743
    • (2006) J. Histochem. Cytochem. , vol.54 , pp. 739-743
    • Shi, S.R.1    Liu, C.2    Balgley, B.M.3    Lee, C.4    Taylor, C.R.5
  • 28
    • 33947572920 scopus 로고    scopus 로고
    • Development of efficient protein extraction methods for shotgun proteome analysis of formalin-fixed tissues
    • X. Jiang, X. Jiang, S. Feng, R. Tian, M. Ye, and H. Zou Development of efficient protein extraction methods for shotgun proteome analysis of formalin-fixed tissues J. Proteome Res. 6 2007 1038 1047
    • (2007) J. Proteome Res. , vol.6 , pp. 1038-1047
    • Jiang, X.1    Jiang, X.2    Feng, S.3    Tian, R.4    Ye, M.5    Zou, H.6
  • 29
    • 62849124399 scopus 로고    scopus 로고
    • Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting
    • N.J. Nirmalan, P. Harnden, P.J. Selby, and R.E. Banks Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting J. Pathol. 217 2009 497 506
    • (2009) J. Pathol. , vol.217 , pp. 497-506
    • Nirmalan, N.J.1    Harnden, P.2    Selby, P.J.3    Banks, R.E.4
  • 30
    • 56249132978 scopus 로고    scopus 로고
    • Overexpression of heat shock protein 27 in squamous cell carcinoma of the uterine cervix: A proteomic analysis using archival formalin-fixed, paraffin-embedded tissues
    • A. Ono, T. Kumai, H. Koizumi, H. Nishikawa, S. Kobayashi, and M. Tadokoro Overexpression of heat shock protein 27 in squamous cell carcinoma of the uterine cervix: a proteomic analysis using archival formalin-fixed, paraffin-embedded tissues Hum. Pathol. 40 2009 41 49
    • (2009) Hum. Pathol. , vol.40 , pp. 41-49
    • Ono, A.1    Kumai, T.2    Koizumi, H.3    Nishikawa, H.4    Kobayashi, S.5    Tadokoro, M.6
  • 32
    • 74749107023 scopus 로고    scopus 로고
    • Comparison of different tissue sampling methods for protein extraction from formalin-fixed and paraffin-embedded tissue specimens
    • I. Grantzdorffer, S. Yumlu, Z. Gioeva, R. von Wasielewski, M.P. Ebert, and C. Rocken Comparison of different tissue sampling methods for protein extraction from formalin-fixed and paraffin-embedded tissue specimens Exp. Mol. Pathol. 88 2010 190 196
    • (2010) Exp. Mol. Pathol. , vol.88 , pp. 190-196
    • Grantzdorffer, I.1    Yumlu, S.2    Gioeva, Z.3    Von Wasielewski, R.4    Ebert, M.P.5    Rocken, C.6
  • 36
    • 79957658095 scopus 로고    scopus 로고
    • Impact of fixation time on GeLC-MS/MS proteomic profiling of formalin-fixed, paraffin-embedded tissues
    • A. Tanca, D. Pagnozzi, G. Falchi, G. Biosa, S. Rocca, G. Foddai, S. Uzzau, and M.F. Addis Impact of fixation time on GeLC-MS/MS proteomic profiling of formalin-fixed, paraffin-embedded tissues J. Proteomics 74 2011 1015 1021
    • (2011) J. Proteomics , vol.74 , pp. 1015-1021
    • Tanca, A.1    Pagnozzi, D.2    Falchi, G.3    Biosa, G.4    Rocca, S.5    Foddai, G.6    Uzzau, S.7    Addis, M.F.8
  • 37
    • 84859583476 scopus 로고    scopus 로고
    • Pressure-assisted protein extraction: A novel method for recovering proteins from archival tissue for proteomic analysis
    • C.B. Fowler, T.J. Waybright, T.D. Veenstra, T.J. O'Leary, and J.T. Mason Pressure-assisted protein extraction: a novel method for recovering proteins from archival tissue for proteomic analysis J. Proteome Res. 11 2012 2602 2608
    • (2012) J. Proteome Res. , vol.11 , pp. 2602-2608
    • Fowler, C.B.1    Waybright, T.J.2    Veenstra, T.D.3    O'Leary, T.J.4    Mason, J.T.5
  • 42
    • 84898545797 scopus 로고    scopus 로고
    • Assessment of the 2-d gel-based proteomics application of clinically archived formalin-fixed paraffin embedded tissues
    • K. Davalieva, S. Kiprijanovska, and M. Polenakovic Assessment of the 2-d gel-based proteomics application of clinically archived formalin-fixed paraffin embedded tissues Protein J. 33 2014 135 142
    • (2014) Protein J. , vol.33 , pp. 135-142
    • Davalieva, K.1    Kiprijanovska, S.2    Polenakovic, M.3
  • 43
    • 84898647800 scopus 로고    scopus 로고
    • Kidney protein profiling of Wilms' tumor patients by analysis of formalin-fixed paraffin-embedded tissue samples
    • E. Hammer, F.D. Ernst, A. Thiele, N.K. Karanam, C. Kujath, M. Evert, U. Volker, and W. Barthlen Kidney protein profiling of Wilms' tumor patients by analysis of formalin-fixed paraffin-embedded tissue samples Clin. Chim. Acta 433 2014 235 241
    • (2014) Clin. Chim. Acta , vol.433 , pp. 235-241
    • Hammer, E.1    Ernst, F.D.2    Thiele, A.3    Karanam, N.K.4    Kujath, C.5    Evert, M.6    Volker, U.7    Barthlen, W.8
  • 44
    • 27144554148 scopus 로고    scopus 로고
    • A nondestructive molecule extraction method allowing morphological and molecular analyses using a single tissue section
    • W.S. Chu, Q. Liang, J. Liu, M.Q. Wei, M. Winters, L. Liotta, G. Sandberg, and M. Gong A nondestructive molecule extraction method allowing morphological and molecular analyses using a single tissue section Lab. Invest. 85 2005 1416 1428
    • (2005) Lab. Invest. , vol.85 , pp. 1416-1428
    • Chu, W.S.1    Liang, Q.2    Liu, J.3    Wei, M.Q.4    Winters, M.5    Liotta, L.6    Sandberg, G.7    Gong, M.8
  • 45
    • 33846629961 scopus 로고    scopus 로고
    • Quantitative protein analysis from formalin-fixed tissues: Implications for translational clinical research and nanoscale molecular diagnosis
    • K.F. Becker, C. Schott, S. Hipp, V. Metzger, P. Porschewski, R. Beck, J. Nahrig, I. Becker, and H. Hofler Quantitative protein analysis from formalin-fixed tissues: implications for translational clinical research and nanoscale molecular diagnosis J. Pathol. 211 2007 370 378
    • (2007) J. Pathol. , vol.211 , pp. 370-378
    • Becker, K.F.1    Schott, C.2    Hipp, S.3    Metzger, V.4    Porschewski, P.5    Beck, R.6    Nahrig, J.7    Becker, I.8    Hofler, H.9
  • 46
    • 84863985149 scopus 로고    scopus 로고
    • Isolation of high quality protein samples from punches of formalin fixed and paraffin embedded tissue blocks
    • J. Kroll, K.F. Becker, S. Kuphal, R. Hein, F. Hofstadter, and A.K. Bosserhoff Isolation of high quality protein samples from punches of formalin fixed and paraffin embedded tissue blocks Histol. Histopathol. 23 2008 391 395
    • (2008) Histol. Histopathol. , vol.23 , pp. 391-395
    • Kroll, J.1    Becker, K.F.2    Kuphal, S.3    Hein, R.4    Hofstadter, F.5    Bosserhoff, A.K.6
  • 47
    • 67449163790 scopus 로고    scopus 로고
    • A well-based reverse-phase protein array applicable to extracts from formalin-fixed paraffin-embedded tissue
    • J.Y. Chung, S.J. Lee, Y. Kris, T. Braunschweig, J.L. Traicoff, and S.M. Hewitt A well-based reverse-phase protein array applicable to extracts from formalin-fixed paraffin-embedded tissue Proteomics Clin. Appl. 2 2008 1539 1547
    • (2008) Proteomics Clin. Appl. , vol.2 , pp. 1539-1547
    • Chung, J.Y.1    Lee, S.J.2    Kris, Y.3    Braunschweig, T.4    Traicoff, J.L.5    Hewitt, S.M.6
  • 48
    • 44649185608 scopus 로고    scopus 로고
    • Guided protein extraction from formalin-fixed tissues for quantitative multiplex analysis avoids detrimental effects of histological stains
    • K.F. Becker, C. Schott, I. Becker, and H. Hofler Guided protein extraction from formalin-fixed tissues for quantitative multiplex analysis avoids detrimental effects of histological stains Proteomics Clin. Appl. 2 2008 737 743
    • (2008) Proteomics Clin. Appl. , vol.2 , pp. 737-743
    • Becker, K.F.1    Schott, C.2    Becker, I.3    Hofler, H.4
  • 50
    • 79960858195 scopus 로고    scopus 로고
    • Utility of formalin-fixed, paraffin-embedded liver biopsy specimens for global proteomic analysis in nonalcoholic steatohepatitis
    • L.N. Bell, R. Saxena, S.G. Mattar, J. You, M. Wang, and N. Chalasani Utility of formalin-fixed, paraffin-embedded liver biopsy specimens for global proteomic analysis in nonalcoholic steatohepatitis Proteomics Clin. Appl. 5 2011 397 404
    • (2011) Proteomics Clin. Appl. , vol.5 , pp. 397-404
    • Bell, L.N.1    Saxena, R.2    Mattar, S.G.3    You, J.4    Wang, M.5    Chalasani, N.6
  • 54
    • 79551641520 scopus 로고    scopus 로고
    • Successful protein extraction from over-fixed and long-term stored formalin-fixed tissues
    • C. Wolff, C. Schott, P. Porschewski, B. Reischauer, and K.F. Becker Successful protein extraction from over-fixed and long-term stored formalin-fixed tissues PLoS One 6 2011 e16353
    • (2011) PLoS One , vol.6 , pp. e16353
    • Wolff, C.1    Schott, C.2    Porschewski, P.3    Reischauer, B.4    Becker, K.F.5
  • 55
    • 84870210064 scopus 로고    scopus 로고
    • Validation of a robust proteomic analysis carried out on formalin-fixed paraffin-embedded tissues of the pancreas obtained from mouse and human
    • K. Kojima, G.J. Bowersock, C. Kojima, C.A. Klug, W.E. Grizzle, and J.A. Mobley Validation of a robust proteomic analysis carried out on formalin-fixed paraffin-embedded tissues of the pancreas obtained from mouse and human Proteomics 12 2012 3393 3402
    • (2012) Proteomics , vol.12 , pp. 3393-3402
    • Kojima, K.1    Bowersock, G.J.2    Kojima, C.3    Klug, C.A.4    Grizzle, W.E.5    Mobley, J.A.6
  • 56
    • 84856395790 scopus 로고    scopus 로고
    • Multiplex immunoassays of peptide hormones extracted from formalin-fixed, paraffin-embedded tissue accurately subclassify pituitary adenomas
    • F.G. Strathmann, G. Borlee, D.E. Born, L.F. Gonzalez-Cuyar, B.R. Huber, and G.S. Baird Multiplex immunoassays of peptide hormones extracted from formalin-fixed, paraffin-embedded tissue accurately subclassify pituitary adenomas Clin. Chem. 58 2012 366 374
    • (2012) Clin. Chem. , vol.58 , pp. 366-374
    • Strathmann, F.G.1    Borlee, G.2    Born, D.E.3    Gonzalez-Cuyar, L.F.4    Huber, B.R.5    Baird, G.S.6
  • 59
    • 2442690257 scopus 로고    scopus 로고
    • Biochemical subtyping of amyloid in formalin-fixed tissue samples confirms and supplements immunohistologic data
    • B. Kaplan, B.M. Martin, A. Livneh, M. Pras, and G.R. Gallo Biochemical subtyping of amyloid in formalin-fixed tissue samples confirms and supplements immunohistologic data Am. J. Clin. Pathol. 121 2004 794 800
    • (2004) Am. J. Clin. Pathol. , vol.121 , pp. 794-800
    • Kaplan, B.1    Martin, B.M.2    Livneh, A.3    Pras, M.4    Gallo, G.R.5
  • 62
    • 84858994198 scopus 로고    scopus 로고
    • Setting proteins free: Progresses and achievements in proteomics of formalin-fixed, paraffin-embedded tissues
    • A. Tanca, D. Pagnozzi, and M.F. Addis Setting proteins free: progresses and achievements in proteomics of formalin-fixed, paraffin-embedded tissues Proteomics Clin. Appl. 6 2012 7 21
    • (2012) Proteomics Clin. Appl. , vol.6 , pp. 7-21
    • Tanca, A.1    Pagnozzi, D.2    Addis, M.F.3
  • 63
    • 84876313066 scopus 로고    scopus 로고
    • Complete solubilization of formalin-fixed, paraffin-embedded tissue may improve proteomic studies
    • S.R. Shi, C.R. Taylor, C.B. Fowler, and J.T. Mason Complete solubilization of formalin-fixed, paraffin-embedded tissue may improve proteomic studies Proteomics Clin. Appl. 7 2013 264 272
    • (2013) Proteomics Clin. Appl. , vol.7 , pp. 264-272
    • Shi, S.R.1    Taylor, C.R.2    Fowler, C.B.3    Mason, J.T.4
  • 64
    • 71049141298 scopus 로고    scopus 로고
    • Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis
    • R.W. Sprung Jr., J.W. Brock, J.P. Tanksley, M. Li, M.K. Washington, R.J. Slebos, and D.C. Liebler Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis Mol. Cell. Proteomics 8 2009 1988 1998
    • (2009) Mol. Cell. Proteomics , vol.8 , pp. 1988-1998
    • Sprung, Jr.R.W.1    Brock, J.W.2    Tanksley, J.P.3    Li, M.4    Washington, M.K.5    Slebos, R.J.6    Liebler, D.C.7
  • 65
    • 77954378942 scopus 로고    scopus 로고
    • Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry
    • P. Ostasiewicz, D.F. Zielinska, M. Mann, and J.R. Wisniewski Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry J. Proteome Res. 9 2010 3688 3700
    • (2010) J. Proteome Res. , vol.9 , pp. 3688-3700
    • Ostasiewicz, P.1    Zielinska, D.F.2    Mann, M.3    Wisniewski, J.R.4
  • 66
    • 84876299279 scopus 로고    scopus 로고
    • Proteomic analysis of formalin-fixed paraffin-embedded renal tissue samples by label-free MS: Assessment of overall technical variability and the impact of block age
    • R.A. Craven, D.A. Cairns, A. Zougman, P. Harnden, P.J. Selby, and R.E. Banks Proteomic analysis of formalin-fixed paraffin-embedded renal tissue samples by label-free MS: assessment of overall technical variability and the impact of block age Proteomics Clin. Appl. 7 2013 273 282
    • (2013) Proteomics Clin. Appl. , vol.7 , pp. 273-282
    • Craven, R.A.1    Cairns, D.A.2    Zougman, A.3    Harnden, P.4    Selby, P.J.5    Banks, R.E.6
  • 67
    • 77952764025 scopus 로고    scopus 로고
    • Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry
    • Z. Xiao, G. Li, Y. Chen, M. Li, F. Peng, C. Li, F. Li, Y. Yu, Y. Ouyang, and Z. Chen Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry J. Histochem. Cytochem. 58 2010 517 527
    • (2010) J. Histochem. Cytochem. , vol.58 , pp. 517-527
    • Xiao, Z.1    Li, G.2    Chen, Y.3    Li, M.4    Peng, F.5    Li, C.6    Li, F.7    Yu, Y.8    Ouyang, Y.9    Chen, Z.10
  • 68
    • 79955448303 scopus 로고    scopus 로고
    • Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker investigations
    • N.J. Nirmalan, C. Hughes, J. Peng, T. McKenna, J. Langridge, D.A. Cairns, P. Harnden, P.J. Selby, and R.E. Banks Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker investigations J. Proteome Res. 10 2011 896 906
    • (2011) J. Proteome Res. , vol.10 , pp. 896-906
    • Nirmalan, N.J.1    Hughes, C.2    Peng, J.3    McKenna, T.4    Langridge, J.5    Cairns, D.A.6    Harnden, P.7    Selby, P.J.8    Banks, R.E.9
  • 69
    • 67349266694 scopus 로고    scopus 로고
    • Universal sample preparation method for proteome analysis
    • J.R. Wisniewski, A. Zougman, N. Nagaraj, and M. Mann Universal sample preparation method for proteome analysis Nat. Methods 6 2009 359 362
    • (2009) Nat. Methods , vol.6 , pp. 359-362
    • Wisniewski, J.R.1    Zougman, A.2    Nagaraj, N.3    Mann, M.4
  • 70
    • 84961291890 scopus 로고    scopus 로고
    • Critical comparison of sample preparation strategies for shotgun proteomic analysis of formalin-fixed, paraffin-embedded samples: Insights from liver tissue
    • A. Tanca, M. Abbondio, S. Pisanu, D. Pagnozzi, S. Uzzau, and M.F. Addis Critical comparison of sample preparation strategies for shotgun proteomic analysis of formalin-fixed, paraffin-embedded samples: insights from liver tissue Clin. Proteomics 11 2014
    • (2014) Clin. Proteomics , vol.11
    • Tanca, A.1    Abbondio, M.2    Pisanu, S.3    Pagnozzi, D.4    Uzzau, S.5    Addis, M.F.6
  • 75
    • 46749106319 scopus 로고    scopus 로고
    • Protein profiling of formalin fixed paraffin embedded tissue: Identification of potential biomarkers for pediatric brainstem glioma
    • J. Nazarian, M. Santi, Y. Hathout, and T.J. Macdonald Protein profiling of formalin fixed paraffin embedded tissue: Identification of potential biomarkers for pediatric brainstem glioma Proteomics Clin. Appl. 2 2008 915 924
    • (2008) Proteomics Clin. Appl. , vol.2 , pp. 915-924
    • Nazarian, J.1    Santi, M.2    Hathout, Y.3    MacDonald, T.J.4
  • 76
    • 77950518174 scopus 로고    scopus 로고
    • Proteomic analysis of laser-microdissected paraffin-embedded tissues: (1) Stage-related protein candidates upon non-metastatic lung adenocarcinoma
    • T. Kawamura, M. Nomura, H. Tojo, K. Fujii, H. Hamasaki, S. Mikami, Y. Bando, H. Kato, and T. Nishimura Proteomic analysis of laser-microdissected paraffin-embedded tissues: (1) Stage-related protein candidates upon non-metastatic lung adenocarcinoma J. Proteomics 73 2010 1089 1099
    • (2010) J. Proteomics , vol.73 , pp. 1089-1099
    • Kawamura, T.1    Nomura, M.2    Tojo, H.3    Fujii, K.4    Hamasaki, H.5    Mikami, S.6    Bando, Y.7    Kato, H.8    Nishimura, T.9
  • 78
    • 84903719412 scopus 로고    scopus 로고
    • Aberrant Mucin5B expression in lung adenocarcinomas detected by iTRAQ labeling quantitative proteomics and immunohistochemistry
    • Y. Li, X. Wang, M. Ao, E. Gabrielson, F. Askin, H. Zhang, and Q.K. Li Aberrant Mucin5B expression in lung adenocarcinomas detected by iTRAQ labeling quantitative proteomics and immunohistochemistry Clin. Proteomics 10 2013 15
    • (2013) Clin. Proteomics , vol.10 , pp. 15
    • Li, Y.1    Wang, X.2    Ao, M.3    Gabrielson, E.4    Askin, F.5    Zhang, H.6    Li, Q.K.7
  • 80
    • 79960011243 scopus 로고    scopus 로고
    • High recovery FASP applied to the proteomic analysis of microdissected formalin fixed paraffin embedded cancer tissues retrieves known colon cancer markers
    • J.R. Wisniewski, P. Ostasiewicz, and M. Mann High recovery FASP applied to the proteomic analysis of microdissected formalin fixed paraffin embedded cancer tissues retrieves known colon cancer markers J. Proteome Res. 10 2011 3040 3049
    • (2011) J. Proteome Res. , vol.10 , pp. 3040-3049
    • Wisniewski, J.R.1    Ostasiewicz, P.2    Mann, M.3
  • 86
    • 84857917059 scopus 로고    scopus 로고
    • Proteomic analysis of formalin-fixed paraffin-embedded pancreatic tissue using liquid chromatography tandem mass spectrometry
    • J.A. Paulo, L.S. Lee, P.A. Banks, H. Steen, and D.L. Conwell Proteomic analysis of formalin-fixed paraffin-embedded pancreatic tissue using liquid chromatography tandem mass spectrometry Pancreas 41 2012 175 185
    • (2012) Pancreas , vol.41 , pp. 175-185
    • Paulo, J.A.1    Lee, L.S.2    Banks, P.A.3    Steen, H.4    Conwell, D.L.5
  • 88
    • 84876314836 scopus 로고    scopus 로고
    • Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10,000 proteins
    • J.R. Wisniewski, K. Dus, and M. Mann Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10,000 proteins Proteomics Clin. Appl. 7 2013 225 233
    • (2013) Proteomics Clin. Appl. , vol.7 , pp. 225-233
    • Wisniewski, J.R.1    Dus, K.2    Mann, M.3
  • 89
    • 84876327507 scopus 로고    scopus 로고
    • Microproteomics by liquid extraction surface analysis: Application to FFPE tissue to study the fimbria region of tubo-ovarian cancer
    • M. Wisztorski, B. Fatou, J. Franck, A. Desmons, I. Farre, E. Leblanc, I. Fournier, and M. Salzet Microproteomics by liquid extraction surface analysis: application to FFPE tissue to study the fimbria region of tubo-ovarian cancer Proteomics Clin. Appl. 7 2013 234 240
    • (2013) Proteomics Clin. Appl. , vol.7 , pp. 234-240
    • Wisztorski, M.1    Fatou, B.2    Franck, J.3    Desmons, A.4    Farre, I.5    Leblanc, E.6    Fournier, I.7    Salzet, M.8
  • 91
    • 75349102311 scopus 로고    scopus 로고
    • Quantitative proteomic analysis of formalin fixed paraffin embedded oral HPV lesions from HIV patients
    • M.R. Jain, T. Liu, J. Hu, M. Darfler, V. Fitzhugh, J. Rinaggio, and H. Li Quantitative proteomic analysis of formalin fixed paraffin embedded oral HPV lesions from HIV patients Open Proteomics J. 1 2008 40 45
    • (2008) Open Proteomics J. , vol.1 , pp. 40-45
    • Jain, M.R.1    Liu, T.2    Hu, J.3    Darfler, M.4    Fitzhugh, V.5    Rinaggio, J.6    Li, H.7
  • 92
    • 77956108790 scopus 로고    scopus 로고
    • MTRAQ-based quantification of potential endometrial carcinoma biomarkers from archived formalin-fixed paraffin-embedded tissues
    • L.V. DeSouza, O. Krakovska, M.M. Darfler, D.B. Krizman, A.D. Romaschin, T.J. Colgan, and K.W. Siu mTRAQ-based quantification of potential endometrial carcinoma biomarkers from archived formalin-fixed paraffin-embedded tissues Proteomics 10 2010 3108 3116
    • (2010) Proteomics , vol.10 , pp. 3108-3116
    • Desouza, L.V.1    Krakovska, O.2    Darfler, M.M.3    Krizman, D.B.4    Romaschin, A.D.5    Colgan, T.J.6    Siu, K.W.7
  • 94
    • 77950517812 scopus 로고    scopus 로고
    • Proteomic analysis of laser-microdissected paraffin-embedded tissues: (2) MRM assay for stage-related proteins upon non-metastatic lung adenocarcinoma
    • T. Nishimura, M. Nomura, H. Tojo, H. Hamasaki, T. Fukuda, K. Fujii, S. Mikami, Y. Bando, and H. Kato Proteomic analysis of laser-microdissected paraffin-embedded tissues: (2) MRM assay for stage-related proteins upon non-metastatic lung adenocarcinoma J. Proteomics 73 2010 1100 1110
    • (2010) J. Proteomics , vol.73 , pp. 1100-1110
    • Nishimura, T.1    Nomura, M.2    Tojo, H.3    Hamasaki, H.4    Fukuda, T.5    Fujii, K.6    Mikami, S.7    Bando, Y.8    Kato, H.9
  • 97
    • 84863231370 scopus 로고    scopus 로고
    • Proteomic identification of immunoproteasome accumulation in formalin-fixed rodent spinal cords with experimental autoimmune encephalomyelitis
    • M.R. Jain, Q. Li, T. Liu, J. Rinaggio, A. Ketkar, V. Tournier, K. Madura, S. Elkabes, and H. Li Proteomic identification of immunoproteasome accumulation in formalin-fixed rodent spinal cords with experimental autoimmune encephalomyelitis J. Proteome Res. 11 2012 1791 1803
    • (2012) J. Proteome Res. , vol.11 , pp. 1791-1803
    • Jain, M.R.1    Li, Q.2    Liu, T.3    Rinaggio, J.4    Ketkar, A.5    Tournier, V.6    Madura, K.7    Elkabes, S.8    Li, H.9
  • 99
    • 84864985857 scopus 로고    scopus 로고
    • Novel in situ pretreatment method for significantly enhancing the signal in MALDI-TOF MS of formalin-fixed paraffin-embedded tissue sections
    • Y. Kakimoto, T. Tsuruyama, T. Yamamoto, M. Furuta, H. Kotani, M. Ozeki, A. Yoshizawa, H. Haga, and K. Tamaki Novel in situ pretreatment method for significantly enhancing the signal in MALDI-TOF MS of formalin-fixed paraffin-embedded tissue sections PLoS One 7 2012 e41607
    • (2012) PLoS One , vol.7 , pp. e41607
    • Kakimoto, Y.1    Tsuruyama, T.2    Yamamoto, T.3    Furuta, M.4    Kotani, H.5    Ozeki, M.6    Yoshizawa, A.7    Haga, H.8    Tamaki, K.9
  • 100
    • 65249162283 scopus 로고    scopus 로고
    • N-linked glycoproteomic analysis of formalin-fixed and paraffin-embedded tissues
    • Y. Tian, K. Gurley, D.L. Meany, C.J. Kemp, and H. Zhang N-linked glycoproteomic analysis of formalin-fixed and paraffin-embedded tissues J. Proteome Res. 8 2009 1657 1662
    • (2009) J. Proteome Res. , vol.8 , pp. 1657-1662
    • Tian, Y.1    Gurley, K.2    Meany, D.L.3    Kemp, C.J.4    Zhang, H.5
  • 101
    • 84893856499 scopus 로고    scopus 로고
    • Phosphoproteome analysis of formalin-fixed and paraffin-embedded tissue sections mounted on microscope slides
    • M. Wakabayashi, H. Yoshihara, T. Masuda, M. Tsukahara, N. Sugiyama, and Y. Ishihama Phosphoproteome analysis of formalin-fixed and paraffin-embedded tissue sections mounted on microscope slides J. Proteome Res. 13 2014 915 924
    • (2014) J. Proteome Res. , vol.13 , pp. 915-924
    • Wakabayashi, M.1    Yoshihara, H.2    Masuda, T.3    Tsukahara, M.4    Sugiyama, N.5    Ishihama, Y.6
  • 102
    • 34248230245 scopus 로고    scopus 로고
    • Direct analysis and MALDI imaging of formalin-fixed, paraffin-embedded tissue sections
    • R. Lemaire, A. Desmons, J.C. Tabet, R. Day, M. Salzet, and I. Fournier Direct analysis and MALDI imaging of formalin-fixed, paraffin-embedded tissue sections J. Proteome Res. 6 2007 1295 1305
    • (2007) J. Proteome Res. , vol.6 , pp. 1295-1305
    • Lemaire, R.1    Desmons, A.2    Tabet, J.C.3    Day, R.4    Salzet, M.5    Fournier, I.6
  • 103
    • 53549111100 scopus 로고    scopus 로고
    • High-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue microarrays using MALDI imaging mass spectrometry
    • M.R. Groseclose, P.P. Massion, P. Chaurand, and R.M. Caprioli High-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue microarrays using MALDI imaging mass spectrometry Proteomics 8 2008 3715 3724
    • (2008) Proteomics , vol.8 , pp. 3715-3724
    • Groseclose, M.R.1    Massion, P.P.2    Chaurand, P.3    Caprioli, R.M.4
  • 104
    • 33746672483 scopus 로고    scopus 로고
    • Molecular imaging of thin mammalian tissue sections by mass spectrometry
    • P. Chaurand, D.S. Cornett, and R.M. Caprioli Molecular imaging of thin mammalian tissue sections by mass spectrometry Curr. Opin. Biotechnol. 17 2006 431 436
    • (2006) Curr. Opin. Biotechnol. , vol.17 , pp. 431-436
    • Chaurand, P.1    Cornett, D.S.2    Caprioli, R.M.3
  • 106
    • 79251606950 scopus 로고    scopus 로고
    • MALDI imaging mass spectrometry (MALDI-IMS)-application of spatial proteomics for ovarian cancer classification and diagnosis
    • J.O. Gustafsson, M.K. Oehler, A. Ruszkiewicz, S.R. McColl, and P. Hoffmann MALDI imaging mass spectrometry (MALDI-IMS)-application of spatial proteomics for ovarian cancer classification and diagnosis Int. J. Mol. Sci. 12 2011 773 794
    • (2011) Int. J. Mol. Sci. , vol.12 , pp. 773-794
    • Gustafsson, J.O.1    Oehler, M.K.2    Ruszkiewicz, A.3    McColl, S.R.4    Hoffmann, P.5
  • 107
    • 84891693836 scopus 로고    scopus 로고
    • MALDI imaging mass spectrometry in cancer research: Combining proteomic profiling and histological evaluation
    • C. Schone, H. Hofler, and A. Walch MALDI imaging mass spectrometry in cancer research: combining proteomic profiling and histological evaluation Clin. Biochem. 46 2013 539 545
    • (2013) Clin. Biochem. , vol.46 , pp. 539-545
    • Schone, C.1    Hofler, H.2    Walch, A.3
  • 108
    • 33847018143 scopus 로고    scopus 로고
    • Identification of proteins directly from tissue: In situ tryptic digestions coupled with imaging mass spectrometry
    • M.R. Groseclose, M. Andersson, W.M. Hardesty, and R.M. Caprioli Identification of proteins directly from tissue: in situ tryptic digestions coupled with imaging mass spectrometry J. Mass Spectrom. 42 2007 254 262
    • (2007) J. Mass Spectrom. , vol.42 , pp. 254-262
    • Groseclose, M.R.1    Andersson, M.2    Hardesty, W.M.3    Caprioli, R.M.4
  • 111
    • 70349974835 scopus 로고    scopus 로고
    • MALDI-ion mobility separation-mass spectrometry imaging of glucose-regulated protein 78 kDa (Grp78) in human formalin-fixed, paraffin-embedded pancreatic adenocarcinoma tissue sections
    • M.C. Djidja, E. Claude, M.F. Snel, P. Scriven, S. Francese, V. Carolan, and M.R. Clench MALDI-ion mobility separation-mass spectrometry imaging of glucose-regulated protein 78 kDa (Grp78) in human formalin-fixed, paraffin-embedded pancreatic adenocarcinoma tissue sections J. Proteome Res. 8 2009 4876 4884
    • (2009) J. Proteome Res. , vol.8 , pp. 4876-4884
    • Djidja, M.C.1    Claude, E.2    Snel, M.F.3    Scriven, P.4    Francese, S.5    Carolan, V.6    Clench, M.R.7
  • 112
    • 77956314944 scopus 로고    scopus 로고
    • Citric acid antigen retrieval (CAAR) for tryptic peptide imaging directly on archived formalin-fixed paraffin-embedded tissue
    • J.O. Gustafsson, M.K. Oehler, S.R. McColl, and P. Hoffmann Citric acid antigen retrieval (CAAR) for tryptic peptide imaging directly on archived formalin-fixed paraffin-embedded tissue J. Proteome Res. 9 2010 4315 4328
    • (2010) J. Proteome Res. , vol.9 , pp. 4315-4328
    • Gustafsson, J.O.1    Oehler, M.K.2    McColl, S.R.3    Hoffmann, P.4
  • 113
    • 80054825298 scopus 로고    scopus 로고
    • Proteomic analysis of formalin-fixed paraffin-embedded tissue by MALDI imaging mass spectrometry
    • R. Casadonte, and R.M. Caprioli Proteomic analysis of formalin-fixed paraffin-embedded tissue by MALDI imaging mass spectrometry Nat. Protoc. 6 2011 1695 1709
    • (2011) Nat. Protoc. , vol.6 , pp. 1695-1709
    • Casadonte, R.1    Caprioli, R.M.2
  • 114
    • 84874051335 scopus 로고    scopus 로고
    • Matrix-assisted laser desorption/ionization imaging protocol for in situ characterization of tryptic peptide identity and distribution in formalin-fixed tissue
    • O.J. Gustafsson, J.S. Eddes, S. Meding, S.R. McColl, M.K. Oehler, and P. Hoffmann Matrix-assisted laser desorption/ionization imaging protocol for in situ characterization of tryptic peptide identity and distribution in formalin-fixed tissue Rapid Commun. Mass Spectrom. 27 2013 655 670
    • (2013) Rapid Commun. Mass Spectrom. , vol.27 , pp. 655-670
    • Gustafsson, O.J.1    Eddes, J.S.2    Meding, S.3    McColl, S.R.4    Oehler, M.K.5    Hoffmann, P.6
  • 115
    • 80054066127 scopus 로고    scopus 로고
    • Protein identification by accurate mass matrix-assisted laser desorption/ionization imaging of tryptic peptides
    • Y. Schober, T. Schramm, B. Spengler, and A. Rompp Protein identification by accurate mass matrix-assisted laser desorption/ionization imaging of tryptic peptides Rapid Commun. Mass Spectrom. 25 2011 2475 2483
    • (2011) Rapid Commun. Mass Spectrom. , vol.25 , pp. 2475-2483
    • Schober, Y.1    Schramm, T.2    Spengler, B.3    Rompp, A.4
  • 117
    • 84859237956 scopus 로고    scopus 로고
    • High-resolution matrix-assisted laser desorption/ionization imaging of tryptic peptides from tissue
    • Y. Schober, S. Guenther, B. Spengler, and A. Rompp High-resolution matrix-assisted laser desorption/ionization imaging of tryptic peptides from tissue Rapid Commun. Mass Spectrom. 26 2012 1141 1146
    • (2012) Rapid Commun. Mass Spectrom. , vol.26 , pp. 1141-1146
    • Schober, Y.1    Guenther, S.2    Spengler, B.3    Rompp, A.4


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