-
3
-
-
69249208535
-
Cell-based proteome analysis: The first stage in the pipeline for biomarker discovery
-
G. Poschmann, B. Sitek, B. Sipos, M. Hamacher, O. Vonend, H.E. Meyer, and K. Stuhler Cell-based proteome analysis: the first stage in the pipeline for biomarker discovery Biochim. Biophys. Acta 1794 2009 1309 1316
-
(2009)
Biochim. Biophys. Acta
, vol.1794
, pp. 1309-1316
-
-
Poschmann, G.1
Sitek, B.2
Sipos, B.3
Hamacher, M.4
Vonend, O.5
Meyer, H.E.6
Stuhler, K.7
-
4
-
-
84876316245
-
Impact of pre-analytical factors on the proteomic analysis of formalin-fixed paraffin-embedded tissue
-
S.M. Thompson, R.A. Craven, N.J. Nirmalan, P. Harnden, P.J. Selby, and R.E. Banks Impact of pre-analytical factors on the proteomic analysis of formalin-fixed paraffin-embedded tissue Proteomics Clin. Appl. 7 2013 241 251
-
(2013)
Proteomics Clin. Appl.
, vol.7
, pp. 241-251
-
-
Thompson, S.M.1
Craven, R.A.2
Nirmalan, N.J.3
Harnden, P.4
Selby, P.J.5
Banks, R.E.6
-
5
-
-
33750092685
-
Mass spectrometric analysis of formalin-fixed paraffin-embedded tissue: Unlocking the proteome within
-
B.L. Hood, T.P. Conrads, and T.D. Veenstra Mass spectrometric analysis of formalin-fixed paraffin-embedded tissue: unlocking the proteome within Proteomics 6 2006 4106 4114
-
(2006)
Proteomics
, vol.6
, pp. 4106-4114
-
-
Hood, B.L.1
Conrads, T.P.2
Veenstra, T.D.3
-
6
-
-
68549098247
-
Generation of high-quality protein extracts from formalin-fixed, paraffin-embedded tissues
-
M.F. Addis, A. Tanca, D. Pagnozzi, S. Crobu, G. Fanciulli, P. Cossu-Rocca, and S. Uzzau Generation of high-quality protein extracts from formalin-fixed, paraffin-embedded tissues Proteomics 9 2009 3815 3823
-
(2009)
Proteomics
, vol.9
, pp. 3815-3823
-
-
Addis, M.F.1
Tanca, A.2
Pagnozzi, D.3
Crobu, S.4
Fanciulli, G.5
Cossu-Rocca, P.6
Uzzau, S.7
-
7
-
-
70349136284
-
2-D PAGE and MS analysis of proteins from formalin-fixed, paraffin-embedded tissues
-
M.F. Addis, A. Tanca, D. Pagnozzi, S. Rocca, and S. Uzzau 2-D PAGE and MS analysis of proteins from formalin-fixed, paraffin-embedded tissues Proteomics 9 2009 4329 4339
-
(2009)
Proteomics
, vol.9
, pp. 4329-4339
-
-
Addis, M.F.1
Tanca, A.2
Pagnozzi, D.3
Rocca, S.4
Uzzau, S.5
-
8
-
-
84920363781
-
MALDI mass spectrometry imaging of formalin-fixed paraffin-embedded tissues in clinical research
-
K. Gorzolka, and A. Walch MALDI mass spectrometry imaging of formalin-fixed paraffin-embedded tissues in clinical research Histol. Histopathol. 29 2014
-
(2014)
Histol. Histopathol.
, vol.29
-
-
Gorzolka, K.1
Walch, A.2
-
9
-
-
29144518633
-
Efficient method for the proteomic analysis of fixed and embedded tissues
-
D.E. Palmer-Toy, B. Krastins, D.A. Sarracino, J.B. Nadol Jr., and S.N. Merchant Efficient method for the proteomic analysis of fixed and embedded tissues J. Proteome Res. 4 2005 2404 2411
-
(2005)
J. Proteome Res.
, vol.4
, pp. 2404-2411
-
-
Palmer-Toy, D.E.1
Krastins, B.2
Sarracino, D.A.3
Nadol, Jr.J.B.4
Merchant, S.N.5
-
10
-
-
14444276493
-
Extraction and analysis of diagnostically useful proteins from formalin-fixed, paraffin-embedded tissue sections
-
K. Ikeda, T. Monden, T. Kanoh, M. Tsujie, H. Izawa, A. Haba, T. Ohnishi, M. Sekimoto, N. Tomita, H. Shiozaki, and M. Monden Extraction and analysis of diagnostically useful proteins from formalin-fixed, paraffin-embedded tissue sections J. Histochem. Cytochem. 46 1998 397 403
-
(1998)
J. Histochem. Cytochem.
, vol.46
, pp. 397-403
-
-
Ikeda, K.1
Monden, T.2
Kanoh, T.3
Tsujie, M.4
Izawa, H.5
Haba, A.6
Ohnishi, T.7
Sekimoto, M.8
Tomita, N.9
Shiozaki, H.10
Monden, M.11
-
11
-
-
27144544744
-
Identification of proteins from formalin-fixed paraffin-embedded cells by LC-MS/MS
-
D.K. Crockett, Z. Lin, C.P. Vaughn, M.S. Lim, and K.S. Elenitoba-Johnson Identification of proteins from formalin-fixed paraffin-embedded cells by LC-MS/MS Lab. Invest. 85 2005 1405 1415
-
(2005)
Lab. Invest.
, vol.85
, pp. 1405-1415
-
-
Crockett, D.K.1
Lin, Z.2
Vaughn, C.P.3
Lim, M.S.4
Elenitoba-Johnson, K.S.5
-
13
-
-
0030998145
-
Antigen retrieval immunohistochemistry: Past, present, and future
-
S.R. Shi, R.J. Cote, and C.R. Taylor Antigen retrieval immunohistochemistry: past, present, and future J. Histochem. Cytochem. 45 1997 327 343
-
(1997)
J. Histochem. Cytochem.
, vol.45
, pp. 327-343
-
-
Shi, S.R.1
Cote, R.J.2
Taylor, C.R.3
-
14
-
-
61849114172
-
Evaluation of archival time on shotgun proteomics of formalin-fixed and paraffin-embedded tissues
-
B.M. Balgley, T. Guo, K. Zhao, X. Fang, F.A. Tavassoli, and C.S. Lee Evaluation of archival time on shotgun proteomics of formalin-fixed and paraffin-embedded tissues J. Proteome Res. 8 2009 917 925
-
(2009)
J. Proteome Res.
, vol.8
, pp. 917-925
-
-
Balgley, B.M.1
Guo, T.2
Zhao, K.3
Fang, X.4
Tavassoli, F.A.5
Lee, C.S.6
-
15
-
-
10744223820
-
Identification of formaldehyde-induced modifications in proteins: Reactions with model peptides
-
B. Metz, G.F. Kersten, P. Hoogerhout, H.F. Brugghe, H.A. Timmermans, A. de Jong, H. Meiring, J. ten Hove, W.E. Hennink, D.J. Crommelin, and W. Jiskoot Identification of formaldehyde-induced modifications in proteins: reactions with model peptides J. Biol. Chem. 279 2004 6235 6243
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 6235-6243
-
-
Metz, B.1
Kersten, G.F.2
Hoogerhout, P.3
Brugghe, H.F.4
Timmermans, H.A.5
De Jong, A.6
Meiring, H.7
Ten Hove, J.8
Hennink, W.E.9
Crommelin, D.J.10
Jiskoot, W.11
-
16
-
-
33646908503
-
Identification of formaldehyde-induced modifications in proteins: Reactions with insulin
-
B. Metz, G.F. Kersten, G.J. Baart, A. de Jong, H. Meiring, J. ten Hove, M.J. van Steenbergen, W.E. Hennink, D.J. Crommelin, and W. Jiskoot Identification of formaldehyde-induced modifications in proteins: reactions with insulin Bioconjug. Chem. 17 2006 815 822
-
(2006)
Bioconjug. Chem.
, vol.17
, pp. 815-822
-
-
Metz, B.1
Kersten, G.F.2
Baart, G.J.3
De Jong, A.4
Meiring, H.5
Ten Hove, J.6
Van Steenbergen, M.J.7
Hennink, W.E.8
Crommelin, D.J.9
Jiskoot, W.10
-
17
-
-
84859965675
-
Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues
-
S. Magdeldin, and T. Yamamoto Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues Proteomics 12 2012 1045 1058
-
(2012)
Proteomics
, vol.12
, pp. 1045-1058
-
-
Magdeldin, S.1
Yamamoto, T.2
-
18
-
-
44149119998
-
Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions
-
J. Toews, J.C. Rogalski, T.J. Clark, and J. Kast Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions Anal. Chim. Acta. 618 2008 168 183
-
(2008)
Anal. Chim. Acta.
, vol.618
, pp. 168-183
-
-
Toews, J.1
Rogalski, J.C.2
Clark, T.J.3
Kast, J.4
-
19
-
-
46049096567
-
Modeling formalin fixation and histological processing with ribonuclease A: Effects of ethanol dehydration on reversal of formaldehyde cross-links
-
C.B. Fowler, T.J. O'Leary, and J.T. Mason Modeling formalin fixation and histological processing with ribonuclease A: effects of ethanol dehydration on reversal of formaldehyde cross-links Lab. Invest. 88 2008 785 791
-
(2008)
Lab. Invest.
, vol.88
, pp. 785-791
-
-
Fowler, C.B.1
O'Leary, T.J.2
Mason, J.T.3
-
20
-
-
33845787470
-
Heat-induced antigen retrieval: Mechanisms and application to histochemistry
-
S. Yamashita Heat-induced antigen retrieval: mechanisms and application to histochemistry Prog. Histochem. Cytochem. 41 2007 141 200
-
(2007)
Prog. Histochem. Cytochem.
, vol.41
, pp. 141-200
-
-
Yamashita, S.1
-
21
-
-
0025829609
-
Antigen retrieval in formalin-fixed, paraffin-embedded tissues: An enhancement method for immunohistochemical staining based on microwave oven heating of tissue sections
-
S.R. Shi, M.E. Key, and K.L. Kalra Antigen retrieval in formalin-fixed, paraffin-embedded tissues: an enhancement method for immunohistochemical staining based on microwave oven heating of tissue sections J. Histochem. Cytochem. 39 1991 741 748
-
(1991)
J. Histochem. Cytochem.
, vol.39
, pp. 741-748
-
-
Shi, S.R.1
Key, M.E.2
Kalra, K.L.3
-
22
-
-
84865577612
-
Advancing formaldehyde cross-linking towards quantitative proteomic applications
-
C. Klockenbusch, J.E. O'Hara, and J. Kast Advancing formaldehyde cross-linking towards quantitative proteomic applications Anal. Bioanal. Chem. 404 2012 1057 1067
-
(2012)
Anal. Bioanal. Chem.
, vol.404
, pp. 1057-1067
-
-
Klockenbusch, C.1
O'Hara, J.E.2
Kast, J.3
-
23
-
-
0027154280
-
Immunoblot analysis of the placental form of glutathione S-transferase in protein extracted from paraffin-embedded human glioma tissue
-
A. Hara, N. Sakai, H. Yamada, N. Yoshimi, T. Tanaka, and H. Mori Immunoblot analysis of the placental form of glutathione S-transferase in protein extracted from paraffin-embedded human glioma tissue J. Cancer Res. Clin. Oncol. 119 1993 493 496
-
(1993)
J. Cancer Res. Clin. Oncol.
, vol.119
, pp. 493-496
-
-
Hara, A.1
Sakai, N.2
Yamada, H.3
Yoshimi, N.4
Tanaka, T.5
Mori, H.6
-
24
-
-
25444454390
-
Influence of tissue fixation on the microextraction and identification of amyloid proteins
-
C. Rocken, and S. Wilhelm Influence of tissue fixation on the microextraction and identification of amyloid proteins J. Lab. Clin. Med. 146 2005 244 250
-
(2005)
J. Lab. Clin. Med.
, vol.146
, pp. 244-250
-
-
Rocken, C.1
Wilhelm, S.2
-
25
-
-
33646698472
-
Protein extraction from formalin-fixed, paraffin-embedded tissue sections: Quality evaluation by mass spectrometry
-
S.R. Shi, C. Liu, B.M. Balgley, C. Lee, and C.R. Taylor Protein extraction from formalin-fixed, paraffin-embedded tissue sections: quality evaluation by mass spectrometry J. Histochem. Cytochem. 54 2006 739 743
-
(2006)
J. Histochem. Cytochem.
, vol.54
, pp. 739-743
-
-
Shi, S.R.1
Liu, C.2
Balgley, B.M.3
Lee, C.4
Taylor, C.R.5
-
26
-
-
55149083702
-
Proteomic analysis of RCL2 paraffin-embedded tissues
-
V. Bellet, F. Boissiere, F. Bibeau, C. Desmetz, M.L. Berthe, P. Rochaix, T. Maudelonde, A. Mange, and J. Solassol Proteomic analysis of RCL2 paraffin-embedded tissues J. Cell. Mol. Med. 12 2008 2027 2036
-
(2008)
J. Cell. Mol. Med.
, vol.12
, pp. 2027-2036
-
-
Bellet, V.1
Boissiere, F.2
Bibeau, F.3
Desmetz, C.4
Berthe, M.L.5
Rochaix, P.6
Maudelonde, T.7
Mange, A.8
Solassol, J.9
-
27
-
-
34250840587
-
Proteome analysis of microdissected formalin-fixed and paraffin-embedded tissue specimens
-
T. Guo, W. Wang, P.A. Rudnick, T. Song, J. Li, Z. Zhuang, R.J. Weil, D.L. DeVoe, C.S. Lee, and B.M. Balgley Proteome analysis of microdissected formalin-fixed and paraffin-embedded tissue specimens J. Histochem. Cytochem. 55 2007 763 772
-
(2007)
J. Histochem. Cytochem.
, vol.55
, pp. 763-772
-
-
Guo, T.1
Wang, W.2
Rudnick, P.A.3
Song, T.4
Li, J.5
Zhuang, Z.6
Weil, R.J.7
Devoe, D.L.8
Lee, C.S.9
Balgley, B.M.10
-
28
-
-
33947572920
-
Development of efficient protein extraction methods for shotgun proteome analysis of formalin-fixed tissues
-
X. Jiang, X. Jiang, S. Feng, R. Tian, M. Ye, and H. Zou Development of efficient protein extraction methods for shotgun proteome analysis of formalin-fixed tissues J. Proteome Res. 6 2007 1038 1047
-
(2007)
J. Proteome Res.
, vol.6
, pp. 1038-1047
-
-
Jiang, X.1
Jiang, X.2
Feng, S.3
Tian, R.4
Ye, M.5
Zou, H.6
-
29
-
-
62849124399
-
Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting
-
N.J. Nirmalan, P. Harnden, P.J. Selby, and R.E. Banks Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting J. Pathol. 217 2009 497 506
-
(2009)
J. Pathol.
, vol.217
, pp. 497-506
-
-
Nirmalan, N.J.1
Harnden, P.2
Selby, P.J.3
Banks, R.E.4
-
30
-
-
56249132978
-
Overexpression of heat shock protein 27 in squamous cell carcinoma of the uterine cervix: A proteomic analysis using archival formalin-fixed, paraffin-embedded tissues
-
A. Ono, T. Kumai, H. Koizumi, H. Nishikawa, S. Kobayashi, and M. Tadokoro Overexpression of heat shock protein 27 in squamous cell carcinoma of the uterine cervix: a proteomic analysis using archival formalin-fixed, paraffin-embedded tissues Hum. Pathol. 40 2009 41 49
-
(2009)
Hum. Pathol.
, vol.40
, pp. 41-49
-
-
Ono, A.1
Kumai, T.2
Koizumi, H.3
Nishikawa, H.4
Kobayashi, S.5
Tadokoro, M.6
-
31
-
-
77956327955
-
Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gel-based proteomics
-
O. Azimzadeh, Z. Barjaktarovic, M. Aubele, J. Calzada-Wack, H. Sarioglu, M.J. Atkinson, and S. Tapio Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gel-based proteomics J. Proteome Res. 9 2010 4710 4720
-
(2010)
J. Proteome Res.
, vol.9
, pp. 4710-4720
-
-
Azimzadeh, O.1
Barjaktarovic, Z.2
Aubele, M.3
Calzada-Wack, J.4
Sarioglu, H.5
Atkinson, M.J.6
Tapio, S.7
-
32
-
-
74749107023
-
Comparison of different tissue sampling methods for protein extraction from formalin-fixed and paraffin-embedded tissue specimens
-
I. Grantzdorffer, S. Yumlu, Z. Gioeva, R. von Wasielewski, M.P. Ebert, and C. Rocken Comparison of different tissue sampling methods for protein extraction from formalin-fixed and paraffin-embedded tissue specimens Exp. Mol. Pathol. 88 2010 190 196
-
(2010)
Exp. Mol. Pathol.
, vol.88
, pp. 190-196
-
-
Grantzdorffer, I.1
Yumlu, S.2
Gioeva, Z.3
Von Wasielewski, R.4
Ebert, M.P.5
Rocken, C.6
-
33
-
-
79958048871
-
Evaluation of formalin-fixed paraffin-embedded tissues in the proteomic analysis of parathyroid glands
-
E. Donadio, L. Giusti, F. Cetani, Y. Da Valle, F. Ciregia, G. Giannaccini, E. Pardi, F. Saponaro, L. Torregrossa, F. Basolo, C. Marcocci, and A. Lucacchini Evaluation of formalin-fixed paraffin-embedded tissues in the proteomic analysis of parathyroid glands Proteome Sci. 9 2011 29
-
(2011)
Proteome Sci.
, vol.9
, pp. 29
-
-
Donadio, E.1
Giusti, L.2
Cetani, F.3
Da Valle, Y.4
Ciregia, F.5
Giannaccini, G.6
Pardi, E.7
Saponaro, F.8
Torregrossa, L.9
Basolo, F.10
Marcocci, C.11
Lucacchini, A.12
-
34
-
-
79958090505
-
A novel procedure for protein extraction from formalin-fixed paraffin-embedded tissues
-
T. Rodriguez-Rigueiro, M. Valladares-Ayerbes, M. Haz-Conde, M. Blanco, G. Aparicio, P. Fernandez-Puente, F.J. Blanco, M.J. Lorenzo, L.A. Aparicio, and A. Figueroa A novel procedure for protein extraction from formalin-fixed paraffin-embedded tissues Proteomics 11 2011 2555 2559
-
(2011)
Proteomics
, vol.11
, pp. 2555-2559
-
-
Rodriguez-Rigueiro, T.1
Valladares-Ayerbes, M.2
Haz-Conde, M.3
Blanco, M.4
Aparicio, G.5
Fernandez-Puente, P.6
Blanco, F.J.7
Lorenzo, M.J.8
Aparicio, L.A.9
Figueroa, A.10
-
35
-
-
79951731085
-
Application of 2-D DIGE to formalin-fixed, paraffin-embedded tissues
-
A. Tanca, D. Pagnozzi, G. Falchi, R. Tonelli, S. Rocca, T. Roggio, S. Uzzau, and M.F. Addis Application of 2-D DIGE to formalin-fixed, paraffin-embedded tissues Proteomics 11 2011 1005 1011
-
(2011)
Proteomics
, vol.11
, pp. 1005-1011
-
-
Tanca, A.1
Pagnozzi, D.2
Falchi, G.3
Tonelli, R.4
Rocca, S.5
Roggio, T.6
Uzzau, S.7
Addis, M.F.8
-
36
-
-
79957658095
-
Impact of fixation time on GeLC-MS/MS proteomic profiling of formalin-fixed, paraffin-embedded tissues
-
A. Tanca, D. Pagnozzi, G. Falchi, G. Biosa, S. Rocca, G. Foddai, S. Uzzau, and M.F. Addis Impact of fixation time on GeLC-MS/MS proteomic profiling of formalin-fixed, paraffin-embedded tissues J. Proteomics 74 2011 1015 1021
-
(2011)
J. Proteomics
, vol.74
, pp. 1015-1021
-
-
Tanca, A.1
Pagnozzi, D.2
Falchi, G.3
Biosa, G.4
Rocca, S.5
Foddai, G.6
Uzzau, S.7
Addis, M.F.8
-
37
-
-
84859583476
-
Pressure-assisted protein extraction: A novel method for recovering proteins from archival tissue for proteomic analysis
-
C.B. Fowler, T.J. Waybright, T.D. Veenstra, T.J. O'Leary, and J.T. Mason Pressure-assisted protein extraction: a novel method for recovering proteins from archival tissue for proteomic analysis J. Proteome Res. 11 2012 2602 2608
-
(2012)
J. Proteome Res.
, vol.11
, pp. 2602-2608
-
-
Fowler, C.B.1
Waybright, T.J.2
Veenstra, T.D.3
O'Leary, T.J.4
Mason, J.T.5
-
38
-
-
84861715116
-
Evaluation of the suitability of archival Bouin-fixed paraffin-embedded tissue specimens to proteomic investigation
-
A. Tanca, M.F. Addis, M.P. Simula, D. Pagnozzi, G. Biosa, S. Pisanu, M. Garziera, R. Cannizzaro, V. Canzonieri, V. De Re, and S. Uzzau Evaluation of the suitability of archival Bouin-fixed paraffin-embedded tissue specimens to proteomic investigation Electrophoresis 33 2012 1375 1384
-
(2012)
Electrophoresis
, vol.33
, pp. 1375-1384
-
-
Tanca, A.1
Addis, M.F.2
Simula, M.P.3
Pagnozzi, D.4
Biosa, G.5
Pisanu, S.6
Garziera, M.7
Cannizzaro, R.8
Canzonieri, V.9
De Re, V.10
Uzzau, S.11
-
39
-
-
84876160986
-
Quantitative proteomics identifies activation of hallmark pathways of cancer in patient melanoma
-
S.D. Byrum, S.K. Larson, N.L. Avaritt, L.E. Moreland, S.G. Mackintosh, W.L. Cheung, and A.J. Tackett Quantitative proteomics identifies activation of hallmark pathways of cancer in patient melanoma J. Proteomics Bioinform. 6 2013 43 50
-
(2013)
J. Proteomics Bioinform.
, vol.6
, pp. 43-50
-
-
Byrum, S.D.1
Larson, S.K.2
Avaritt, N.L.3
Moreland, L.E.4
MacKintosh, S.G.5
Cheung, W.L.6
Tackett, A.J.7
-
40
-
-
84885106739
-
Proteomic analysis of formalin-fixed paraffin-embedded colorectal cancer tissue using tandem mass tag protein labeling
-
E. Maes, D. Valkenborg, I. Mertens, V. Broeckx, G. Baggerman, X. Sagaert, B. Landuyt, H. Prenen, and L. Schoofs Proteomic analysis of formalin-fixed paraffin-embedded colorectal cancer tissue using tandem mass tag protein labeling Mol. Biosyst. 9 2013 2686 2695
-
(2013)
Mol. Biosyst.
, vol.9
, pp. 2686-2695
-
-
Maes, E.1
Valkenborg, D.2
Mertens, I.3
Broeckx, V.4
Baggerman, G.5
Sagaert, X.6
Landuyt, B.7
Prenen, H.8
Schoofs, L.9
-
41
-
-
84876333265
-
Improved protein extraction and protein identification from archival formalin-fixed paraffin-embedded human aortas
-
Z. Fu, K. Yan, A. Rosenberg, Z. Jin, B. Crain, G. Athas, R.S. Heide, T. Howard, A.D. Everett, D. Herrington, and J.E. Van Eyk Improved protein extraction and protein identification from archival formalin-fixed paraffin-embedded human aortas Proteomics Clin. Appl. 7 2013 217 224
-
(2013)
Proteomics Clin. Appl.
, vol.7
, pp. 217-224
-
-
Fu, Z.1
Yan, K.2
Rosenberg, A.3
Jin, Z.4
Crain, B.5
Athas, G.6
Heide, R.S.7
Howard, T.8
Everett, A.D.9
Herrington, D.10
Van Eyk, J.E.11
-
42
-
-
84898545797
-
Assessment of the 2-d gel-based proteomics application of clinically archived formalin-fixed paraffin embedded tissues
-
K. Davalieva, S. Kiprijanovska, and M. Polenakovic Assessment of the 2-d gel-based proteomics application of clinically archived formalin-fixed paraffin embedded tissues Protein J. 33 2014 135 142
-
(2014)
Protein J.
, vol.33
, pp. 135-142
-
-
Davalieva, K.1
Kiprijanovska, S.2
Polenakovic, M.3
-
43
-
-
84898647800
-
Kidney protein profiling of Wilms' tumor patients by analysis of formalin-fixed paraffin-embedded tissue samples
-
E. Hammer, F.D. Ernst, A. Thiele, N.K. Karanam, C. Kujath, M. Evert, U. Volker, and W. Barthlen Kidney protein profiling of Wilms' tumor patients by analysis of formalin-fixed paraffin-embedded tissue samples Clin. Chim. Acta 433 2014 235 241
-
(2014)
Clin. Chim. Acta
, vol.433
, pp. 235-241
-
-
Hammer, E.1
Ernst, F.D.2
Thiele, A.3
Karanam, N.K.4
Kujath, C.5
Evert, M.6
Volker, U.7
Barthlen, W.8
-
44
-
-
27144554148
-
A nondestructive molecule extraction method allowing morphological and molecular analyses using a single tissue section
-
W.S. Chu, Q. Liang, J. Liu, M.Q. Wei, M. Winters, L. Liotta, G. Sandberg, and M. Gong A nondestructive molecule extraction method allowing morphological and molecular analyses using a single tissue section Lab. Invest. 85 2005 1416 1428
-
(2005)
Lab. Invest.
, vol.85
, pp. 1416-1428
-
-
Chu, W.S.1
Liang, Q.2
Liu, J.3
Wei, M.Q.4
Winters, M.5
Liotta, L.6
Sandberg, G.7
Gong, M.8
-
45
-
-
33846629961
-
Quantitative protein analysis from formalin-fixed tissues: Implications for translational clinical research and nanoscale molecular diagnosis
-
K.F. Becker, C. Schott, S. Hipp, V. Metzger, P. Porschewski, R. Beck, J. Nahrig, I. Becker, and H. Hofler Quantitative protein analysis from formalin-fixed tissues: implications for translational clinical research and nanoscale molecular diagnosis J. Pathol. 211 2007 370 378
-
(2007)
J. Pathol.
, vol.211
, pp. 370-378
-
-
Becker, K.F.1
Schott, C.2
Hipp, S.3
Metzger, V.4
Porschewski, P.5
Beck, R.6
Nahrig, J.7
Becker, I.8
Hofler, H.9
-
46
-
-
84863985149
-
Isolation of high quality protein samples from punches of formalin fixed and paraffin embedded tissue blocks
-
J. Kroll, K.F. Becker, S. Kuphal, R. Hein, F. Hofstadter, and A.K. Bosserhoff Isolation of high quality protein samples from punches of formalin fixed and paraffin embedded tissue blocks Histol. Histopathol. 23 2008 391 395
-
(2008)
Histol. Histopathol.
, vol.23
, pp. 391-395
-
-
Kroll, J.1
Becker, K.F.2
Kuphal, S.3
Hein, R.4
Hofstadter, F.5
Bosserhoff, A.K.6
-
47
-
-
67449163790
-
A well-based reverse-phase protein array applicable to extracts from formalin-fixed paraffin-embedded tissue
-
J.Y. Chung, S.J. Lee, Y. Kris, T. Braunschweig, J.L. Traicoff, and S.M. Hewitt A well-based reverse-phase protein array applicable to extracts from formalin-fixed paraffin-embedded tissue Proteomics Clin. Appl. 2 2008 1539 1547
-
(2008)
Proteomics Clin. Appl.
, vol.2
, pp. 1539-1547
-
-
Chung, J.Y.1
Lee, S.J.2
Kris, Y.3
Braunschweig, T.4
Traicoff, J.L.5
Hewitt, S.M.6
-
48
-
-
44649185608
-
Guided protein extraction from formalin-fixed tissues for quantitative multiplex analysis avoids detrimental effects of histological stains
-
K.F. Becker, C. Schott, I. Becker, and H. Hofler Guided protein extraction from formalin-fixed tissues for quantitative multiplex analysis avoids detrimental effects of histological stains Proteomics Clin. Appl. 2 2008 737 743
-
(2008)
Proteomics Clin. Appl.
, vol.2
, pp. 737-743
-
-
Becker, K.F.1
Schott, C.2
Becker, I.3
Hofler, H.4
-
49
-
-
77957336097
-
Proteomic analysis of PAXgene-fixed tissues
-
B. Ergin, S. Meding, R. Langer, M. Kap, C. Viertler, C. Schott, U. Ferch, P. Riegman, K. Zatloukal, A. Walch, and K.F. Becker Proteomic analysis of PAXgene-fixed tissues J. Proteome Res. 9 2010 5188 5196
-
(2010)
J. Proteome Res.
, vol.9
, pp. 5188-5196
-
-
Ergin, B.1
Meding, S.2
Langer, R.3
Kap, M.4
Viertler, C.5
Schott, C.6
Ferch, U.7
Riegman, P.8
Zatloukal, K.9
Walch, A.10
Becker, K.F.11
-
50
-
-
79960858195
-
Utility of formalin-fixed, paraffin-embedded liver biopsy specimens for global proteomic analysis in nonalcoholic steatohepatitis
-
L.N. Bell, R. Saxena, S.G. Mattar, J. You, M. Wang, and N. Chalasani Utility of formalin-fixed, paraffin-embedded liver biopsy specimens for global proteomic analysis in nonalcoholic steatohepatitis Proteomics Clin. Appl. 5 2011 397 404
-
(2011)
Proteomics Clin. Appl.
, vol.5
, pp. 397-404
-
-
Bell, L.N.1
Saxena, R.2
Mattar, S.G.3
You, J.4
Wang, M.5
Chalasani, N.6
-
51
-
-
80053108285
-
Discovery of new molecular subtypes in oesophageal adenocarcinoma
-
D. Berg, C. Wolff, R. Langer, T. Schuster, M. Feith, J. Slotta-Huspenina, K. Malinowsky, and K.F. Becker Discovery of new molecular subtypes in oesophageal adenocarcinoma PLoS One 6 2011 e23985
-
(2011)
PLoS One
, vol.6
, pp. e23985
-
-
Berg, D.1
Wolff, C.2
Langer, R.3
Schuster, T.4
Feith, M.5
Slotta-Huspenina, J.6
Malinowsky, K.7
Becker, K.F.8
-
52
-
-
80053566553
-
A quantitative proteomic analysis of FFPE melanoma
-
S. Byrum, N.L. Avaritt, S.G. Mackintosh, J.M. Munkberg, B.D. Badgwell, W.L. Cheung, and A.J. Tackett A quantitative proteomic analysis of FFPE melanoma J. Cutan. Pathol. 38 2011 933 936
-
(2011)
J. Cutan. Pathol.
, vol.38
, pp. 933-936
-
-
Byrum, S.1
Avaritt, N.L.2
MacKintosh, S.G.3
Munkberg, J.M.4
Badgwell, B.D.5
Cheung, W.L.6
Tackett, A.J.7
-
53
-
-
79960350722
-
Protein phosphorylation analysis in archival clinical cancer samples by shotgun and targeted proteomics approaches
-
A. Gamez-Pozo, I. Sanchez-Navarro, E. Calvo, E. Diaz, M. Miguel-Martin, R. Lopez, T. Agullo, E. Camafeita, E. Espinosa, J.A. Lopez, M. Nistal, and J.A. Vara Protein phosphorylation analysis in archival clinical cancer samples by shotgun and targeted proteomics approaches Mol. Biosyst. 7 2011 2368 2374
-
(2011)
Mol. Biosyst.
, vol.7
, pp. 2368-2374
-
-
Gamez-Pozo, A.1
Sanchez-Navarro, I.2
Calvo, E.3
Diaz, E.4
Miguel-Martin, M.5
Lopez, R.6
Agullo, T.7
Camafeita, E.8
Espinosa, E.9
Lopez, J.A.10
Nistal, M.11
Vara, J.A.12
-
54
-
-
79551641520
-
Successful protein extraction from over-fixed and long-term stored formalin-fixed tissues
-
C. Wolff, C. Schott, P. Porschewski, B. Reischauer, and K.F. Becker Successful protein extraction from over-fixed and long-term stored formalin-fixed tissues PLoS One 6 2011 e16353
-
(2011)
PLoS One
, vol.6
, pp. e16353
-
-
Wolff, C.1
Schott, C.2
Porschewski, P.3
Reischauer, B.4
Becker, K.F.5
-
55
-
-
84870210064
-
Validation of a robust proteomic analysis carried out on formalin-fixed paraffin-embedded tissues of the pancreas obtained from mouse and human
-
K. Kojima, G.J. Bowersock, C. Kojima, C.A. Klug, W.E. Grizzle, and J.A. Mobley Validation of a robust proteomic analysis carried out on formalin-fixed paraffin-embedded tissues of the pancreas obtained from mouse and human Proteomics 12 2012 3393 3402
-
(2012)
Proteomics
, vol.12
, pp. 3393-3402
-
-
Kojima, K.1
Bowersock, G.J.2
Kojima, C.3
Klug, C.A.4
Grizzle, W.E.5
Mobley, J.A.6
-
56
-
-
84856395790
-
Multiplex immunoassays of peptide hormones extracted from formalin-fixed, paraffin-embedded tissue accurately subclassify pituitary adenomas
-
F.G. Strathmann, G. Borlee, D.E. Born, L.F. Gonzalez-Cuyar, B.R. Huber, and G.S. Baird Multiplex immunoassays of peptide hormones extracted from formalin-fixed, paraffin-embedded tissue accurately subclassify pituitary adenomas Clin. Chem. 58 2012 366 374
-
(2012)
Clin. Chem.
, vol.58
, pp. 366-374
-
-
Strathmann, F.G.1
Borlee, G.2
Born, D.E.3
Gonzalez-Cuyar, L.F.4
Huber, B.R.5
Baird, G.S.6
-
57
-
-
84870356223
-
Molecular analysis of HER2 signaling in human breast cancer by functional protein pathway activation mapping
-
J.D. Wulfkuhle, D. Berg, C. Wolff, R. Langer, K. Tran, J. Illi, V. Espina, M. Pierobon, J. Deng, A. DeMichele, A. Walch, H. Bronger, I. Becker, C. Waldhor, H. Hofler, L. Esserman, L.A. Liotta, K.F. Becker, and E.F. Petricoin III Molecular analysis of HER2 signaling in human breast cancer by functional protein pathway activation mapping Clin. Cancer Res. 18 2012 6426 6435
-
(2012)
Clin. Cancer Res.
, vol.18
, pp. 6426-6435
-
-
Wulfkuhle, J.D.1
Berg, D.2
Wolff, C.3
Langer, R.4
Tran, K.5
Illi, J.6
Espina, V.7
Pierobon, M.8
Deng, J.9
Demichele, A.10
Walch, A.11
Bronger, H.12
Becker, I.13
Waldhor, C.14
Hofler, H.15
Esserman, L.16
Liotta, L.A.17
Becker, K.F.18
Petricoin, E.F.19
-
58
-
-
84890055112
-
Protein expression profiling of formalin-fixed paraffin-embedded tissue using recombinant antibody microarrays
-
F. Pauly, L. Dexlin-Mellby, S. Ek, M. Ohlin, N. Olsson, K. Jirstrom, M. Dictor, S. Schoenmakers, C.A. Borrebaeck, and C. Wingren Protein expression profiling of formalin-fixed paraffin-embedded tissue using recombinant antibody microarrays J. Proteome Res. 12 2013 5943 5953
-
(2013)
J. Proteome Res.
, vol.12
, pp. 5943-5953
-
-
Pauly, F.1
Dexlin-Mellby, L.2
Ek, S.3
Ohlin, M.4
Olsson, N.5
Jirstrom, K.6
Dictor, M.7
Schoenmakers, S.8
Borrebaeck, C.A.9
Wingren, C.10
-
59
-
-
2442690257
-
Biochemical subtyping of amyloid in formalin-fixed tissue samples confirms and supplements immunohistologic data
-
B. Kaplan, B.M. Martin, A. Livneh, M. Pras, and G.R. Gallo Biochemical subtyping of amyloid in formalin-fixed tissue samples confirms and supplements immunohistologic data Am. J. Clin. Pathol. 121 2004 794 800
-
(2004)
Am. J. Clin. Pathol.
, vol.121
, pp. 794-800
-
-
Kaplan, B.1
Martin, B.M.2
Livneh, A.3
Pras, M.4
Gallo, G.R.5
-
60
-
-
78651516681
-
Proteomic analysis of formalin-fixed, paraffin-embedded lung neuroendocrine tumor samples from hospital archives
-
A. Tanca, M.F. Addis, D. Pagnozzi, P. Cossu-Rocca, R. Tonelli, G. Falchi, A. Eccher, T. Roggio, G. Fanciulli, and S. Uzzau Proteomic analysis of formalin-fixed, paraffin-embedded lung neuroendocrine tumor samples from hospital archives J. Proteomics 74 2011 359 370
-
(2011)
J. Proteomics
, vol.74
, pp. 359-370
-
-
Tanca, A.1
Addis, M.F.2
Pagnozzi, D.3
Cossu-Rocca, P.4
Tonelli, R.5
Falchi, G.6
Eccher, A.7
Roggio, T.8
Fanciulli, G.9
Uzzau, S.10
-
61
-
-
84859270363
-
Label-free protein profiling of formalin-fixed paraffin-embedded (FFPE) heart tissue reveals immediate mitochondrial impairment after ionising radiation
-
O. Azimzadeh, H. Scherthan, R. Yentrapalli, Z. Barjaktarovic, M. Ueffing, M. Conrad, F. Neff, J. Calzada-Wack, M. Aubele, C. Buske, M.J. Atkinson, S.M. Hauck, and S. Tapio Label-free protein profiling of formalin-fixed paraffin-embedded (FFPE) heart tissue reveals immediate mitochondrial impairment after ionising radiation J. Proteomics 75 2012 2384 2395
-
(2012)
J. Proteomics
, vol.75
, pp. 2384-2395
-
-
Azimzadeh, O.1
Scherthan, H.2
Yentrapalli, R.3
Barjaktarovic, Z.4
Ueffing, M.5
Conrad, M.6
Neff, F.7
Calzada-Wack, J.8
Aubele, M.9
Buske, C.10
Atkinson, M.J.11
Hauck, S.M.12
Tapio, S.13
-
62
-
-
84858994198
-
Setting proteins free: Progresses and achievements in proteomics of formalin-fixed, paraffin-embedded tissues
-
A. Tanca, D. Pagnozzi, and M.F. Addis Setting proteins free: progresses and achievements in proteomics of formalin-fixed, paraffin-embedded tissues Proteomics Clin. Appl. 6 2012 7 21
-
(2012)
Proteomics Clin. Appl.
, vol.6
, pp. 7-21
-
-
Tanca, A.1
Pagnozzi, D.2
Addis, M.F.3
-
63
-
-
84876313066
-
Complete solubilization of formalin-fixed, paraffin-embedded tissue may improve proteomic studies
-
S.R. Shi, C.R. Taylor, C.B. Fowler, and J.T. Mason Complete solubilization of formalin-fixed, paraffin-embedded tissue may improve proteomic studies Proteomics Clin. Appl. 7 2013 264 272
-
(2013)
Proteomics Clin. Appl.
, vol.7
, pp. 264-272
-
-
Shi, S.R.1
Taylor, C.R.2
Fowler, C.B.3
Mason, J.T.4
-
64
-
-
71049141298
-
Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis
-
R.W. Sprung Jr., J.W. Brock, J.P. Tanksley, M. Li, M.K. Washington, R.J. Slebos, and D.C. Liebler Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis Mol. Cell. Proteomics 8 2009 1988 1998
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 1988-1998
-
-
Sprung, Jr.R.W.1
Brock, J.W.2
Tanksley, J.P.3
Li, M.4
Washington, M.K.5
Slebos, R.J.6
Liebler, D.C.7
-
65
-
-
77954378942
-
Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry
-
P. Ostasiewicz, D.F. Zielinska, M. Mann, and J.R. Wisniewski Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry J. Proteome Res. 9 2010 3688 3700
-
(2010)
J. Proteome Res.
, vol.9
, pp. 3688-3700
-
-
Ostasiewicz, P.1
Zielinska, D.F.2
Mann, M.3
Wisniewski, J.R.4
-
66
-
-
84876299279
-
Proteomic analysis of formalin-fixed paraffin-embedded renal tissue samples by label-free MS: Assessment of overall technical variability and the impact of block age
-
R.A. Craven, D.A. Cairns, A. Zougman, P. Harnden, P.J. Selby, and R.E. Banks Proteomic analysis of formalin-fixed paraffin-embedded renal tissue samples by label-free MS: assessment of overall technical variability and the impact of block age Proteomics Clin. Appl. 7 2013 273 282
-
(2013)
Proteomics Clin. Appl.
, vol.7
, pp. 273-282
-
-
Craven, R.A.1
Cairns, D.A.2
Zougman, A.3
Harnden, P.4
Selby, P.J.5
Banks, R.E.6
-
67
-
-
77952764025
-
Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry
-
Z. Xiao, G. Li, Y. Chen, M. Li, F. Peng, C. Li, F. Li, Y. Yu, Y. Ouyang, and Z. Chen Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry J. Histochem. Cytochem. 58 2010 517 527
-
(2010)
J. Histochem. Cytochem.
, vol.58
, pp. 517-527
-
-
Xiao, Z.1
Li, G.2
Chen, Y.3
Li, M.4
Peng, F.5
Li, C.6
Li, F.7
Yu, Y.8
Ouyang, Y.9
Chen, Z.10
-
68
-
-
79955448303
-
Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker investigations
-
N.J. Nirmalan, C. Hughes, J. Peng, T. McKenna, J. Langridge, D.A. Cairns, P. Harnden, P.J. Selby, and R.E. Banks Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker investigations J. Proteome Res. 10 2011 896 906
-
(2011)
J. Proteome Res.
, vol.10
, pp. 896-906
-
-
Nirmalan, N.J.1
Hughes, C.2
Peng, J.3
McKenna, T.4
Langridge, J.5
Cairns, D.A.6
Harnden, P.7
Selby, P.J.8
Banks, R.E.9
-
70
-
-
84961291890
-
Critical comparison of sample preparation strategies for shotgun proteomic analysis of formalin-fixed, paraffin-embedded samples: Insights from liver tissue
-
A. Tanca, M. Abbondio, S. Pisanu, D. Pagnozzi, S. Uzzau, and M.F. Addis Critical comparison of sample preparation strategies for shotgun proteomic analysis of formalin-fixed, paraffin-embedded samples: insights from liver tissue Clin. Proteomics 11 2014
-
(2014)
Clin. Proteomics
, vol.11
-
-
Tanca, A.1
Abbondio, M.2
Pisanu, S.3
Pagnozzi, D.4
Uzzau, S.5
Addis, M.F.6
-
71
-
-
28644451439
-
Proteomic analysis of formalin-fixed prostate cancer tissue
-
B.L. Hood, M.M. Darfler, T.G. Guiel, B. Furusato, D.A. Lucas, B.R. Ringeisen, I.A. Sesterhenn, T.P. Conrads, T.D. Veenstra, and D.B. Krizman Proteomic analysis of formalin-fixed prostate cancer tissue Mol. Cell. Proteomics 4 2005 1741 1753
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 1741-1753
-
-
Hood, B.L.1
Darfler, M.M.2
Guiel, T.G.3
Furusato, B.4
Lucas, D.A.5
Ringeisen, B.R.6
Sesterhenn, I.A.7
Conrads, T.P.8
Veenstra, T.D.9
Krizman, D.B.10
-
72
-
-
27144511949
-
Liquid Tissue: Proteomic profiling of formalin-fixed tissues
-
(Suppl.)
-
D.A. Prieto, B.L. Hood, M.M. Darfler, T.G. Guiel, D.A. Lucas, T.P. Conrads, T.D. Veenstra, and D.B. Krizman Liquid Tissue: proteomic profiling of formalin-fixed tissues Biotechniques 2005 32 35 (Suppl.)
-
(2005)
Biotechniques
, pp. 32-35
-
-
Prieto, D.A.1
Hood, B.L.2
Darfler, M.M.3
Guiel, T.G.4
Lucas, D.A.5
Conrads, T.P.6
Veenstra, T.D.7
Krizman, D.B.8
-
73
-
-
44449101783
-
Antigen retrieval for proteomic characterization of formalin-fixed and paraffin-embedded tissues
-
H. Xu, L. Yang, W. Wang, S.R. Shi, C. Liu, Y. Liu, X. Fang, C.R. Taylor, C.S. Lee, and B.M. Balgley Antigen retrieval for proteomic characterization of formalin-fixed and paraffin-embedded tissues J. Proteome Res. 7 2008 1098 1108
-
(2008)
J. Proteome Res.
, vol.7
, pp. 1098-1108
-
-
Xu, H.1
Yang, L.2
Wang, W.3
Shi, S.R.4
Liu, C.5
Liu, Y.6
Fang, X.7
Taylor, C.R.8
Lee, C.S.9
Balgley, B.M.10
-
74
-
-
39749160439
-
Proteomic analysis of laser-captured paraffin-embedded tissues: A molecular portrait of head and neck cancer progression
-
V. Patel, B.L. Hood, A.A. Molinolo, N.H. Lee, T.P. Conrads, J.C. Braisted, D.B. Krizman, T.D. Veenstra, and J.S. Gutkind Proteomic analysis of laser-captured paraffin-embedded tissues: a molecular portrait of head and neck cancer progression Clin. Cancer Res. 14 2008 1002 1014
-
(2008)
Clin. Cancer Res.
, vol.14
, pp. 1002-1014
-
-
Patel, V.1
Hood, B.L.2
Molinolo, A.A.3
Lee, N.H.4
Conrads, T.P.5
Braisted, J.C.6
Krizman, D.B.7
Veenstra, T.D.8
Gutkind, J.S.9
-
75
-
-
46749106319
-
Protein profiling of formalin fixed paraffin embedded tissue: Identification of potential biomarkers for pediatric brainstem glioma
-
J. Nazarian, M. Santi, Y. Hathout, and T.J. Macdonald Protein profiling of formalin fixed paraffin embedded tissue: Identification of potential biomarkers for pediatric brainstem glioma Proteomics Clin. Appl. 2 2008 915 924
-
(2008)
Proteomics Clin. Appl.
, vol.2
, pp. 915-924
-
-
Nazarian, J.1
Santi, M.2
Hathout, Y.3
MacDonald, T.J.4
-
76
-
-
77950518174
-
Proteomic analysis of laser-microdissected paraffin-embedded tissues: (1) Stage-related protein candidates upon non-metastatic lung adenocarcinoma
-
T. Kawamura, M. Nomura, H. Tojo, K. Fujii, H. Hamasaki, S. Mikami, Y. Bando, H. Kato, and T. Nishimura Proteomic analysis of laser-microdissected paraffin-embedded tissues: (1) Stage-related protein candidates upon non-metastatic lung adenocarcinoma J. Proteomics 73 2010 1089 1099
-
(2010)
J. Proteomics
, vol.73
, pp. 1089-1099
-
-
Kawamura, T.1
Nomura, M.2
Tojo, H.3
Fujii, K.4
Hamasaki, H.5
Mikami, S.6
Bando, Y.7
Kato, H.8
Nishimura, T.9
-
77
-
-
79952392534
-
Differential proteomic analysis of late-stage and recurrent breast cancer from formalin-fixed paraffin-embedded tissues
-
N.W. Bateman, M. Sun, R. Bhargava, B.L. Hood, M.M. Darfler, A.J. Kovatich, J.A. Hooke, D.B. Krizman, and T.P. Conrads Differential proteomic analysis of late-stage and recurrent breast cancer from formalin-fixed paraffin-embedded tissues J. Proteome Res. 10 2011 1323 1332
-
(2011)
J. Proteome Res.
, vol.10
, pp. 1323-1332
-
-
Bateman, N.W.1
Sun, M.2
Bhargava, R.3
Hood, B.L.4
Darfler, M.M.5
Kovatich, A.J.6
Hooke, J.A.7
Krizman, D.B.8
Conrads, T.P.9
-
78
-
-
84903719412
-
Aberrant Mucin5B expression in lung adenocarcinomas detected by iTRAQ labeling quantitative proteomics and immunohistochemistry
-
Y. Li, X. Wang, M. Ao, E. Gabrielson, F. Askin, H. Zhang, and Q.K. Li Aberrant Mucin5B expression in lung adenocarcinomas detected by iTRAQ labeling quantitative proteomics and immunohistochemistry Clin. Proteomics 10 2013 15
-
(2013)
Clin. Proteomics
, vol.10
, pp. 15
-
-
Li, Y.1
Wang, X.2
Ao, M.3
Gabrielson, E.4
Askin, F.5
Zhang, H.6
Li, Q.K.7
-
79
-
-
84878863276
-
Proteomic analysis of differential protein expression by brain metastases of gynecological malignancies
-
A. Yoshida, N. Okamoto, A. Tozawa-Ono, H. Koizumi, K. Kiguchi, B. Ishizuka, T. Kumai, and N. Suzuki Proteomic analysis of differential protein expression by brain metastases of gynecological malignancies Hum. Cell 26 2013 56 66
-
(2013)
Hum. Cell
, vol.26
, pp. 56-66
-
-
Yoshida, A.1
Okamoto, N.2
Tozawa-Ono, A.3
Koizumi, H.4
Kiguchi, K.5
Ishizuka, B.6
Kumai, T.7
Suzuki, N.8
-
80
-
-
79960011243
-
High recovery FASP applied to the proteomic analysis of microdissected formalin fixed paraffin embedded cancer tissues retrieves known colon cancer markers
-
J.R. Wisniewski, P. Ostasiewicz, and M. Mann High recovery FASP applied to the proteomic analysis of microdissected formalin fixed paraffin embedded cancer tissues retrieves known colon cancer markers J. Proteome Res. 10 2011 3040 3049
-
(2011)
J. Proteome Res.
, vol.10
, pp. 3040-3049
-
-
Wisniewski, J.R.1
Ostasiewicz, P.2
Mann, M.3
-
81
-
-
80655142296
-
Standardization of a sample preparation and analytical workflow for proteomics of archival endometrial cancer tissue
-
A. Alkhas, B.L. Hood, K. Oliver, P.N. Teng, J. Oliver, D. Mitchell, C.A. Hamilton, G.L. Maxwell, and T.P. Conrads Standardization of a sample preparation and analytical workflow for proteomics of archival endometrial cancer tissue J. Proteome Res. 10 2011 5264 5271
-
(2011)
J. Proteome Res.
, vol.10
, pp. 5264-5271
-
-
Alkhas, A.1
Hood, B.L.2
Oliver, K.3
Teng, P.N.4
Oliver, J.5
Mitchell, D.6
Hamilton, C.A.7
Maxwell, G.L.8
Conrads, T.P.9
-
82
-
-
84868122911
-
Proteomic profiling of paraffin-embedded samples identifies metaplasia-specific and early-stage gastric cancer biomarkers
-
J.F. Sousa, A.J. Ham, C. Whitwell, K.T. Nam, H.J. Lee, H.K. Yang, W.H. Kim, B. Zhang, M. Li, B. LaFleur, D.C. Liebler, and J.R. Goldenring Proteomic profiling of paraffin-embedded samples identifies metaplasia-specific and early-stage gastric cancer biomarkers Am. J. Pathol. 181 2012 1560 1572
-
(2012)
Am. J. Pathol.
, vol.181
, pp. 1560-1572
-
-
Sousa, J.F.1
Ham, A.J.2
Whitwell, C.3
Nam, K.T.4
Lee, H.J.5
Yang, H.K.6
Kim, W.H.7
Zhang, B.8
Li, M.9
Lafleur, B.10
Liebler, D.C.11
Goldenring, J.R.12
-
83
-
-
84886793850
-
Nm23/nucleoside diphosphate kinase-A as a potent prognostic marker in invasive pancreatic ductal carcinoma identified by proteomic analysis of laser micro-dissected formalin-fixed paraffin-embedded tissue
-
T. Takadate, T. Onogawa, K. Fujii, F. Motoi, S. Mikami, T. Fukuda, M. Kihara, T. Suzuki, T. Takemura, T. Minowa, N. Hanagata, K. Kinoshita, T. Morikawa, K. Shirasaki, T. Rikiyama, Y. Katayose, S. Egawa, T. Nishimura, and M. Unno Nm23/nucleoside diphosphate kinase-A as a potent prognostic marker in invasive pancreatic ductal carcinoma identified by proteomic analysis of laser micro-dissected formalin-fixed paraffin-embedded tissue Clin. Proteomics 9 2012 8
-
(2012)
Clin. Proteomics
, vol.9
, pp. 8
-
-
Takadate, T.1
Onogawa, T.2
Fujii, K.3
Motoi, F.4
Mikami, S.5
Fukuda, T.6
Kihara, M.7
Suzuki, T.8
Takemura, T.9
Minowa, T.10
Hanagata, N.11
Kinoshita, K.12
Morikawa, T.13
Shirasaki, K.14
Rikiyama, T.15
Katayose, Y.16
Egawa, S.17
Nishimura, T.18
Unno, M.19
-
84
-
-
84872952806
-
Novel prognostic protein markers of resectable pancreatic cancer identified by coupled shotgun and targeted proteomics using formalin-fixed paraffin-embedded tissues
-
T. Takadate, T. Onogawa, T. Fukuda, F. Motoi, T. Suzuki, K. Fujii, M. Kihara, S. Mikami, Y. Bando, S. Maeda, K. Ishida, T. Minowa, N. Hanagata, H. Ohtsuka, Y. Katayose, S. Egawa, T. Nishimura, and M. Unno Novel prognostic protein markers of resectable pancreatic cancer identified by coupled shotgun and targeted proteomics using formalin-fixed paraffin-embedded tissues Int. J. Cancer 132 2013 1368 1382
-
(2013)
Int. J. Cancer
, vol.132
, pp. 1368-1382
-
-
Takadate, T.1
Onogawa, T.2
Fukuda, T.3
Motoi, F.4
Suzuki, T.5
Fujii, K.6
Kihara, M.7
Mikami, S.8
Bando, Y.9
Maeda, S.10
Ishida, K.11
Minowa, T.12
Hanagata, N.13
Ohtsuka, H.14
Katayose, Y.15
Egawa, S.16
Nishimura, T.17
Unno, M.18
-
85
-
-
84862777470
-
Proteome of formalin-fixed paraffin-embedded pancreatic ductal adenocarcinoma and lymph node metastases
-
K. Naidoo, R. Jones, B. Dmitrovic, N. Wijesuriya, H. Kocher, I.R. Hart, and T. Crnogorac-Jurcevic Proteome of formalin-fixed paraffin-embedded pancreatic ductal adenocarcinoma and lymph node metastases J. Pathol. 226 2012 756 763
-
(2012)
J. Pathol.
, vol.226
, pp. 756-763
-
-
Naidoo, K.1
Jones, R.2
Dmitrovic, B.3
Wijesuriya, N.4
Kocher, H.5
Hart, I.R.6
Crnogorac-Jurcevic, T.7
-
86
-
-
84857917059
-
Proteomic analysis of formalin-fixed paraffin-embedded pancreatic tissue using liquid chromatography tandem mass spectrometry
-
J.A. Paulo, L.S. Lee, P.A. Banks, H. Steen, and D.L. Conwell Proteomic analysis of formalin-fixed paraffin-embedded pancreatic tissue using liquid chromatography tandem mass spectrometry Pancreas 41 2012 175 185
-
(2012)
Pancreas
, vol.41
, pp. 175-185
-
-
Paulo, J.A.1
Lee, L.S.2
Banks, P.A.3
Steen, H.4
Conwell, D.L.5
-
87
-
-
84870930884
-
Variability of protein and phosphoprotein levels in clinical tissue specimens during the preanalytical phase
-
S. Gundisch, S. Hauck, H. Sarioglu, C. Schott, C. Viertler, M. Kap, T. Schuster, B. Reischauer, R. Rosenberg, C. Verhoef, H.J. Mischinger, P. Riegman, K. Zatloukal, and K.F. Becker Variability of protein and phosphoprotein levels in clinical tissue specimens during the preanalytical phase J. Proteome Res. 11 2012 5748 5762
-
(2012)
J. Proteome Res.
, vol.11
, pp. 5748-5762
-
-
Gundisch, S.1
Hauck, S.2
Sarioglu, H.3
Schott, C.4
Viertler, C.5
Kap, M.6
Schuster, T.7
Reischauer, B.8
Rosenberg, R.9
Verhoef, C.10
Mischinger, H.J.11
Riegman, P.12
Zatloukal, K.13
Becker, K.F.14
-
88
-
-
84876314836
-
Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10,000 proteins
-
J.R. Wisniewski, K. Dus, and M. Mann Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10,000 proteins Proteomics Clin. Appl. 7 2013 225 233
-
(2013)
Proteomics Clin. Appl.
, vol.7
, pp. 225-233
-
-
Wisniewski, J.R.1
Dus, K.2
Mann, M.3
-
89
-
-
84876327507
-
Microproteomics by liquid extraction surface analysis: Application to FFPE tissue to study the fimbria region of tubo-ovarian cancer
-
M. Wisztorski, B. Fatou, J. Franck, A. Desmons, I. Farre, E. Leblanc, I. Fournier, and M. Salzet Microproteomics by liquid extraction surface analysis: application to FFPE tissue to study the fimbria region of tubo-ovarian cancer Proteomics Clin. Appl. 7 2013 234 240
-
(2013)
Proteomics Clin. Appl.
, vol.7
, pp. 234-240
-
-
Wisztorski, M.1
Fatou, B.2
Franck, J.3
Desmons, A.4
Farre, I.5
Leblanc, E.6
Fournier, I.7
Salzet, M.8
-
90
-
-
84907999444
-
Impact of routinely employed procedures for tissue processing on the proteomic analysis of formalin-fixed paraffin-embedded tissue
-
P. Bronsert, J. Weisser, M.L. Biniossek, M. Kuehs, B. Mayer, V. Drendel, S. Timme, H. Shahinian, S. Kusters, U.F. Wellner, S. Lassmann, M. Werner, and O. Schilling Impact of routinely employed procedures for tissue processing on the proteomic analysis of formalin-fixed paraffin-embedded tissue Proteomics Clin. Appl. 8 10 2014 796 804
-
(2014)
Proteomics Clin. Appl.
, vol.8
, Issue.10
, pp. 796-804
-
-
Bronsert, P.1
Weisser, J.2
Biniossek, M.L.3
Kuehs, M.4
Mayer, B.5
Drendel, V.6
Timme, S.7
Shahinian, H.8
Kusters, S.9
Wellner, U.F.10
Lassmann, S.11
Werner, M.12
Schilling, O.13
-
91
-
-
75349102311
-
Quantitative proteomic analysis of formalin fixed paraffin embedded oral HPV lesions from HIV patients
-
M.R. Jain, T. Liu, J. Hu, M. Darfler, V. Fitzhugh, J. Rinaggio, and H. Li Quantitative proteomic analysis of formalin fixed paraffin embedded oral HPV lesions from HIV patients Open Proteomics J. 1 2008 40 45
-
(2008)
Open Proteomics J.
, vol.1
, pp. 40-45
-
-
Jain, M.R.1
Liu, T.2
Hu, J.3
Darfler, M.4
Fitzhugh, V.5
Rinaggio, J.6
Li, H.7
-
92
-
-
77956108790
-
MTRAQ-based quantification of potential endometrial carcinoma biomarkers from archived formalin-fixed paraffin-embedded tissues
-
L.V. DeSouza, O. Krakovska, M.M. Darfler, D.B. Krizman, A.D. Romaschin, T.J. Colgan, and K.W. Siu mTRAQ-based quantification of potential endometrial carcinoma biomarkers from archived formalin-fixed paraffin-embedded tissues Proteomics 10 2010 3108 3116
-
(2010)
Proteomics
, vol.10
, pp. 3108-3116
-
-
Desouza, L.V.1
Krakovska, O.2
Darfler, M.M.3
Krizman, D.B.4
Romaschin, A.D.5
Colgan, T.J.6
Siu, K.W.7
-
93
-
-
70149108744
-
Quantitative proteomics using formalin-fixed paraffin-embedded tissues of oral squamous cell carcinoma
-
A. Negishi, M. Masuda, M. Ono, K. Honda, M. Shitashige, R. Satow, T. Sakuma, H. Kuwabara, Y. Nakanishi, Y. Kanai, K. Omura, S. Hirohashi, and T. Yamada Quantitative proteomics using formalin-fixed paraffin-embedded tissues of oral squamous cell carcinoma Cancer Sci. 100 2009 1605 1611
-
(2009)
Cancer Sci.
, vol.100
, pp. 1605-1611
-
-
Negishi, A.1
Masuda, M.2
Ono, M.3
Honda, K.4
Shitashige, M.5
Satow, R.6
Sakuma, T.7
Kuwabara, H.8
Nakanishi, Y.9
Kanai, Y.10
Omura, K.11
Hirohashi, S.12
Yamada, T.13
-
94
-
-
77950517812
-
Proteomic analysis of laser-microdissected paraffin-embedded tissues: (2) MRM assay for stage-related proteins upon non-metastatic lung adenocarcinoma
-
T. Nishimura, M. Nomura, H. Tojo, H. Hamasaki, T. Fukuda, K. Fujii, S. Mikami, Y. Bando, and H. Kato Proteomic analysis of laser-microdissected paraffin-embedded tissues: (2) MRM assay for stage-related proteins upon non-metastatic lung adenocarcinoma J. Proteomics 73 2010 1100 1110
-
(2010)
J. Proteomics
, vol.73
, pp. 1100-1110
-
-
Nishimura, T.1
Nomura, M.2
Tojo, H.3
Hamasaki, H.4
Fukuda, T.5
Fujii, K.6
Mikami, S.7
Bando, Y.8
Kato, H.9
-
95
-
-
84924838888
-
Galectin-7 as a potential predictive marker of chemo- and/or radio-therapy resistance in oral squamous cell carcinoma
-
S. Matsukawa, K. Morita, A. Negishi, H. Harada, Y. Nakajima, H. Shimamoto, H. Tomioka, K. Tanaka, M. Ono, T. Yamada, and K. Omura Galectin-7 as a potential predictive marker of chemo- and/or radio-therapy resistance in oral squamous cell carcinoma Cancer Med. 3 2014 349 361
-
(2014)
Cancer Med.
, vol.3
, pp. 349-361
-
-
Matsukawa, S.1
Morita, K.2
Negishi, A.3
Harada, H.4
Nakajima, Y.5
Shimamoto, H.6
Tomioka, H.7
Tanaka, K.8
Ono, M.9
Yamada, T.10
Omura, K.11
-
96
-
-
79959946214
-
Multiple reaction monitoring assay for pre-eclampsia related calcyclin peptides in formalin fixed paraffin embedded placenta
-
C. Guzel, N.T. Ursem, L.J. Dekker, P. Derkx, J. Joore, E. van Dijk, G. Ligtvoet, E.A. Steegers, and T.M. Luider Multiple reaction monitoring assay for pre-eclampsia related calcyclin peptides in formalin fixed paraffin embedded placenta J. Proteome Res. 10 2011 3274 3282
-
(2011)
J. Proteome Res.
, vol.10
, pp. 3274-3282
-
-
Guzel, C.1
Ursem, N.T.2
Dekker, L.J.3
Derkx, P.4
Joore, J.5
Van Dijk, E.6
Ligtvoet, G.7
Steegers, E.A.8
Luider, T.M.9
-
97
-
-
84863231370
-
Proteomic identification of immunoproteasome accumulation in formalin-fixed rodent spinal cords with experimental autoimmune encephalomyelitis
-
M.R. Jain, Q. Li, T. Liu, J. Rinaggio, A. Ketkar, V. Tournier, K. Madura, S. Elkabes, and H. Li Proteomic identification of immunoproteasome accumulation in formalin-fixed rodent spinal cords with experimental autoimmune encephalomyelitis J. Proteome Res. 11 2012 1791 1803
-
(2012)
J. Proteome Res.
, vol.11
, pp. 1791-1803
-
-
Jain, M.R.1
Li, Q.2
Liu, T.3
Rinaggio, J.4
Ketkar, A.5
Tournier, V.6
Madura, K.7
Elkabes, S.8
Li, H.9
-
98
-
-
84861814883
-
Precision of multiple reaction monitoring mass spectrometry analysis of formalin-fixed, paraffin-embedded tissue
-
R.W. Sprung, M.A. Martinez, K.L. Carpenter, A.J. Ham, M.K. Washington, C.L. Arteaga, M.E. Sanders, and D.C. Liebler Precision of multiple reaction monitoring mass spectrometry analysis of formalin-fixed, paraffin-embedded tissue J. Proteome Res. 11 2012 3498 3505
-
(2012)
J. Proteome Res.
, vol.11
, pp. 3498-3505
-
-
Sprung, R.W.1
Martinez, M.A.2
Carpenter, K.L.3
Ham, A.J.4
Washington, M.K.5
Arteaga, C.L.6
Sanders, M.E.7
Liebler, D.C.8
-
99
-
-
84864985857
-
Novel in situ pretreatment method for significantly enhancing the signal in MALDI-TOF MS of formalin-fixed paraffin-embedded tissue sections
-
Y. Kakimoto, T. Tsuruyama, T. Yamamoto, M. Furuta, H. Kotani, M. Ozeki, A. Yoshizawa, H. Haga, and K. Tamaki Novel in situ pretreatment method for significantly enhancing the signal in MALDI-TOF MS of formalin-fixed paraffin-embedded tissue sections PLoS One 7 2012 e41607
-
(2012)
PLoS One
, vol.7
, pp. e41607
-
-
Kakimoto, Y.1
Tsuruyama, T.2
Yamamoto, T.3
Furuta, M.4
Kotani, H.5
Ozeki, M.6
Yoshizawa, A.7
Haga, H.8
Tamaki, K.9
-
100
-
-
65249162283
-
N-linked glycoproteomic analysis of formalin-fixed and paraffin-embedded tissues
-
Y. Tian, K. Gurley, D.L. Meany, C.J. Kemp, and H. Zhang N-linked glycoproteomic analysis of formalin-fixed and paraffin-embedded tissues J. Proteome Res. 8 2009 1657 1662
-
(2009)
J. Proteome Res.
, vol.8
, pp. 1657-1662
-
-
Tian, Y.1
Gurley, K.2
Meany, D.L.3
Kemp, C.J.4
Zhang, H.5
-
101
-
-
84893856499
-
Phosphoproteome analysis of formalin-fixed and paraffin-embedded tissue sections mounted on microscope slides
-
M. Wakabayashi, H. Yoshihara, T. Masuda, M. Tsukahara, N. Sugiyama, and Y. Ishihama Phosphoproteome analysis of formalin-fixed and paraffin-embedded tissue sections mounted on microscope slides J. Proteome Res. 13 2014 915 924
-
(2014)
J. Proteome Res.
, vol.13
, pp. 915-924
-
-
Wakabayashi, M.1
Yoshihara, H.2
Masuda, T.3
Tsukahara, M.4
Sugiyama, N.5
Ishihama, Y.6
-
102
-
-
34248230245
-
Direct analysis and MALDI imaging of formalin-fixed, paraffin-embedded tissue sections
-
R. Lemaire, A. Desmons, J.C. Tabet, R. Day, M. Salzet, and I. Fournier Direct analysis and MALDI imaging of formalin-fixed, paraffin-embedded tissue sections J. Proteome Res. 6 2007 1295 1305
-
(2007)
J. Proteome Res.
, vol.6
, pp. 1295-1305
-
-
Lemaire, R.1
Desmons, A.2
Tabet, J.C.3
Day, R.4
Salzet, M.5
Fournier, I.6
-
103
-
-
53549111100
-
High-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue microarrays using MALDI imaging mass spectrometry
-
M.R. Groseclose, P.P. Massion, P. Chaurand, and R.M. Caprioli High-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue microarrays using MALDI imaging mass spectrometry Proteomics 8 2008 3715 3724
-
(2008)
Proteomics
, vol.8
, pp. 3715-3724
-
-
Groseclose, M.R.1
Massion, P.P.2
Chaurand, P.3
Caprioli, R.M.4
-
104
-
-
33746672483
-
Molecular imaging of thin mammalian tissue sections by mass spectrometry
-
P. Chaurand, D.S. Cornett, and R.M. Caprioli Molecular imaging of thin mammalian tissue sections by mass spectrometry Curr. Opin. Biotechnol. 17 2006 431 436
-
(2006)
Curr. Opin. Biotechnol.
, vol.17
, pp. 431-436
-
-
Chaurand, P.1
Cornett, D.S.2
Caprioli, R.M.3
-
106
-
-
79251606950
-
MALDI imaging mass spectrometry (MALDI-IMS)-application of spatial proteomics for ovarian cancer classification and diagnosis
-
J.O. Gustafsson, M.K. Oehler, A. Ruszkiewicz, S.R. McColl, and P. Hoffmann MALDI imaging mass spectrometry (MALDI-IMS)-application of spatial proteomics for ovarian cancer classification and diagnosis Int. J. Mol. Sci. 12 2011 773 794
-
(2011)
Int. J. Mol. Sci.
, vol.12
, pp. 773-794
-
-
Gustafsson, J.O.1
Oehler, M.K.2
Ruszkiewicz, A.3
McColl, S.R.4
Hoffmann, P.5
-
107
-
-
84891693836
-
MALDI imaging mass spectrometry in cancer research: Combining proteomic profiling and histological evaluation
-
C. Schone, H. Hofler, and A. Walch MALDI imaging mass spectrometry in cancer research: combining proteomic profiling and histological evaluation Clin. Biochem. 46 2013 539 545
-
(2013)
Clin. Biochem.
, vol.46
, pp. 539-545
-
-
Schone, C.1
Hofler, H.2
Walch, A.3
-
108
-
-
33847018143
-
Identification of proteins directly from tissue: In situ tryptic digestions coupled with imaging mass spectrometry
-
M.R. Groseclose, M. Andersson, W.M. Hardesty, and R.M. Caprioli Identification of proteins directly from tissue: in situ tryptic digestions coupled with imaging mass spectrometry J. Mass Spectrom. 42 2007 254 262
-
(2007)
J. Mass Spectrom.
, vol.42
, pp. 254-262
-
-
Groseclose, M.R.1
Andersson, M.2
Hardesty, W.M.3
Caprioli, R.M.4
-
109
-
-
76749109003
-
On-tissue protein identification and imaging by MALDI-ion mobility mass spectrometry
-
J. Stauber, L. MacAleese, J. Franck, E. Claude, M. Snel, B.K. Kaletas, I.M. Wiel, M. Wisztorski, I. Fournier, and R.M. Heeren On-tissue protein identification and imaging by MALDI-ion mobility mass spectrometry J. Am. Soc. Mass Spectrom. 21 2010 338 347
-
(2010)
J. Am. Soc. Mass Spectrom.
, vol.21
, pp. 338-347
-
-
Stauber, J.1
MacAleese, L.2
Franck, J.3
Claude, E.4
Snel, M.5
Kaletas, B.K.6
Wiel, I.M.7
Wisztorski, M.8
Fournier, I.9
Heeren, R.M.10
-
110
-
-
36049026123
-
A novel method for analyzing formalin-fixed paraffin embedded (FFPE) tissue sections by mass spectrometry imaging
-
Y. Aoki, A. Toyama, T. Shimada, T. Sugita, C. Aoki, Y. Umino, A. Suzuki, D. Aoki, Y. Daigo, Y. Nakamura, and T.A. Sato A novel method for analyzing formalin-fixed paraffin embedded (FFPE) tissue sections by mass spectrometry imaging Proc. Jpn. Acad. Ser. B Phys. Biol. Sci. 83 2007 205 214
-
(2007)
Proc. Jpn. Acad. Ser. B Phys. Biol. Sci.
, vol.83
, pp. 205-214
-
-
Aoki, Y.1
Toyama, A.2
Shimada, T.3
Sugita, T.4
Aoki, C.5
Umino, Y.6
Suzuki, A.7
Aoki, D.8
Daigo, Y.9
Nakamura, Y.10
Sato, T.A.11
-
111
-
-
70349974835
-
MALDI-ion mobility separation-mass spectrometry imaging of glucose-regulated protein 78 kDa (Grp78) in human formalin-fixed, paraffin-embedded pancreatic adenocarcinoma tissue sections
-
M.C. Djidja, E. Claude, M.F. Snel, P. Scriven, S. Francese, V. Carolan, and M.R. Clench MALDI-ion mobility separation-mass spectrometry imaging of glucose-regulated protein 78 kDa (Grp78) in human formalin-fixed, paraffin-embedded pancreatic adenocarcinoma tissue sections J. Proteome Res. 8 2009 4876 4884
-
(2009)
J. Proteome Res.
, vol.8
, pp. 4876-4884
-
-
Djidja, M.C.1
Claude, E.2
Snel, M.F.3
Scriven, P.4
Francese, S.5
Carolan, V.6
Clench, M.R.7
-
112
-
-
77956314944
-
Citric acid antigen retrieval (CAAR) for tryptic peptide imaging directly on archived formalin-fixed paraffin-embedded tissue
-
J.O. Gustafsson, M.K. Oehler, S.R. McColl, and P. Hoffmann Citric acid antigen retrieval (CAAR) for tryptic peptide imaging directly on archived formalin-fixed paraffin-embedded tissue J. Proteome Res. 9 2010 4315 4328
-
(2010)
J. Proteome Res.
, vol.9
, pp. 4315-4328
-
-
Gustafsson, J.O.1
Oehler, M.K.2
McColl, S.R.3
Hoffmann, P.4
-
113
-
-
80054825298
-
Proteomic analysis of formalin-fixed paraffin-embedded tissue by MALDI imaging mass spectrometry
-
R. Casadonte, and R.M. Caprioli Proteomic analysis of formalin-fixed paraffin-embedded tissue by MALDI imaging mass spectrometry Nat. Protoc. 6 2011 1695 1709
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1695-1709
-
-
Casadonte, R.1
Caprioli, R.M.2
-
114
-
-
84874051335
-
Matrix-assisted laser desorption/ionization imaging protocol for in situ characterization of tryptic peptide identity and distribution in formalin-fixed tissue
-
O.J. Gustafsson, J.S. Eddes, S. Meding, S.R. McColl, M.K. Oehler, and P. Hoffmann Matrix-assisted laser desorption/ionization imaging protocol for in situ characterization of tryptic peptide identity and distribution in formalin-fixed tissue Rapid Commun. Mass Spectrom. 27 2013 655 670
-
(2013)
Rapid Commun. Mass Spectrom.
, vol.27
, pp. 655-670
-
-
Gustafsson, O.J.1
Eddes, J.S.2
Meding, S.3
McColl, S.R.4
Oehler, M.K.5
Hoffmann, P.6
-
115
-
-
80054066127
-
Protein identification by accurate mass matrix-assisted laser desorption/ionization imaging of tryptic peptides
-
Y. Schober, T. Schramm, B. Spengler, and A. Rompp Protein identification by accurate mass matrix-assisted laser desorption/ionization imaging of tryptic peptides Rapid Commun. Mass Spectrom. 25 2011 2475 2483
-
(2011)
Rapid Commun. Mass Spectrom.
, vol.25
, pp. 2475-2483
-
-
Schober, Y.1
Schramm, T.2
Spengler, B.3
Rompp, A.4
-
116
-
-
84865163407
-
Internal calibrants allow high accuracy peptide matching between MALDI imaging MS and LC-MS/MS
-
J.O. Gustafsson, J.S. Eddes, S. Meding, T. Koudelka, M.K. Oehler, S.R. McColl, and P. Hoffmann Internal calibrants allow high accuracy peptide matching between MALDI imaging MS and LC-MS/MS J. Proteomics 75 2012 5093 5105
-
(2012)
J. Proteomics
, vol.75
, pp. 5093-5105
-
-
Gustafsson, J.O.1
Eddes, J.S.2
Meding, S.3
Koudelka, T.4
Oehler, M.K.5
McColl, S.R.6
Hoffmann, P.7
-
117
-
-
84859237956
-
High-resolution matrix-assisted laser desorption/ionization imaging of tryptic peptides from tissue
-
Y. Schober, S. Guenther, B. Spengler, and A. Rompp High-resolution matrix-assisted laser desorption/ionization imaging of tryptic peptides from tissue Rapid Commun. Mass Spectrom. 26 2012 1141 1146
-
(2012)
Rapid Commun. Mass Spectrom.
, vol.26
, pp. 1141-1146
-
-
Schober, Y.1
Guenther, S.2
Spengler, B.3
Rompp, A.4
-
118
-
-
71849100285
-
Imaging mass spectrometry of gastric carcinoma in formalin-fixed paraffin-embedded tissue microarray
-
Y. Morita, K. Ikegami, N. Goto-Inoue, T. Hayasaka, N. Zaima, H. Tanaka, T. Uehara, T. Setoguchi, T. Sakaguchi, H. Igarashi, H. Sugimura, M. Setou, and H. Konno Imaging mass spectrometry of gastric carcinoma in formalin-fixed paraffin-embedded tissue microarray Cancer Sci. 101 2010 267 273
-
(2010)
Cancer Sci.
, vol.101
, pp. 267-273
-
-
Morita, Y.1
Ikegami, K.2
Goto-Inoue, N.3
Hayasaka, T.4
Zaima, N.5
Tanaka, H.6
Uehara, T.7
Setoguchi, T.8
Sakaguchi, T.9
Igarashi, H.10
Sugimura, H.11
Setou, M.12
Konno, H.13
-
119
-
-
77951256401
-
Novel molecular tumour classification using MALDI-mass spectrometry imaging of tissue micro-array
-
M.C. Djidja, E. Claude, M.F. Snel, S. Francese, P. Scriven, V. Carolan, and M.R. Clench Novel molecular tumour classification using MALDI-mass spectrometry imaging of tissue micro-array Anal. Bioanal. Chem. 397 2010 587 601
-
(2010)
Anal. Bioanal. Chem.
, vol.397
, pp. 587-601
-
-
Djidja, M.C.1
Claude, E.2
Snel, M.F.3
Francese, S.4
Scriven, P.5
Carolan, V.6
Clench, M.R.7
-
120
-
-
84884709219
-
MALDI imaging on large-scale tissue microarrays identifies molecular features associated with tumour phenotype in oesophageal cancer
-
A. Quaas, A.S. Bahar, K. von Loga, A.S. Seddiqi, J.M. Singer, M. Omidi, O. Kraus, M. Kwiatkowski, M. Trusch, S. Minner, E. Burandt, P. Stahl, W. Wilczak, M. Wurlitzer, R. Simon, G. Sauter, A. Marx, and H. Schluter MALDI imaging on large-scale tissue microarrays identifies molecular features associated with tumour phenotype in oesophageal cancer Histopathology 63 2013 455 462
-
(2013)
Histopathology
, vol.63
, pp. 455-462
-
-
Quaas, A.1
Bahar, A.S.2
Von Loga, K.3
Seddiqi, A.S.4
Singer, J.M.5
Omidi, M.6
Kraus, O.7
Kwiatkowski, M.8
Trusch, M.9
Minner, S.10
Burandt, E.11
Stahl, P.12
Wilczak, W.13
Wurlitzer, M.14
Simon, R.15
Sauter, G.16
Marx, A.17
Schluter, H.18
-
121
-
-
84878844720
-
MALDI mass spectrometric imaging based identification of clinically relevant signals in prostate cancer using large-scale tissue microarrays
-
S. Steurer, C. Borkowski, S. Odinga, M. Buchholz, C. Koop, H. Huland, M. Becker, M. Witt, D. Trede, M. Omidi, O. Kraus, A.S. Bahar, A.S. Seddiqi, J.M. Singer, M. Kwiatkowski, M. Trusch, R. Simon, M. Wurlitzer, S. Minner, T. Schlomm, G. Sauter, and H. Schluter MALDI mass spectrometric imaging based identification of clinically relevant signals in prostate cancer using large-scale tissue microarrays Int. J. Cancer 133 2013 920 928
-
(2013)
Int. J. Cancer
, vol.133
, pp. 920-928
-
-
Steurer, S.1
Borkowski, C.2
Odinga, S.3
Buchholz, M.4
Koop, C.5
Huland, H.6
Becker, M.7
Witt, M.8
Trede, D.9
Omidi, M.10
Kraus, O.11
Bahar, A.S.12
Seddiqi, A.S.13
Singer, J.M.14
Kwiatkowski, M.15
Trusch, M.16
Simon, R.17
Wurlitzer, M.18
Minner, S.19
Schlomm, T.20
Sauter, G.21
Schluter, H.22
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