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Volumn 74, Issue 7, 2011, Pages 1015-1021

Impact of fixation time on GeLC-MS/MS proteomic profiling of formalin-fixed, paraffin-embedded tissues

Author keywords

FFPE; Fixation time; Formaldehyde; GeLC MS MS; Proteomics

Indexed keywords

AMINO ACID; BIOLOGICAL MARKER; FORMALDEHYDE; PARAFFIN;

EID: 79957658095     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2011.03.015     Document Type: Article
Times cited : (22)

References (30)
  • 2
    • 33750092685 scopus 로고    scopus 로고
    • Mass spectrometric analysis of formalin-fixed paraffin-embedded tissue: unlocking the proteome within
    • Hood B.L., Conrads T.P., Veenstra T.D. Mass spectrometric analysis of formalin-fixed paraffin-embedded tissue: unlocking the proteome within. Proteomics 2006, 6:4106-4114.
    • (2006) Proteomics , vol.6 , pp. 4106-4114
    • Hood, B.L.1    Conrads, T.P.2    Veenstra, T.D.3
  • 3
    • 0025829609 scopus 로고
    • Antigen retrieval in formalin-fixed, paraffin-embedded tissues: an enhancement method for immunohistochemical staining based on microwave oven heating of tissue sections
    • Shi S., Key M., Kalra K. Antigen retrieval in formalin-fixed, paraffin-embedded tissues: an enhancement method for immunohistochemical staining based on microwave oven heating of tissue sections. J Histochem Cytochem 1991, 39:741-748.
    • (1991) J Histochem Cytochem , vol.39 , pp. 741-748
    • Shi, S.1    Key, M.2    Kalra, K.3
  • 4
    • 0034924275 scopus 로고    scopus 로고
    • Antigen retrieval techniques: current perspectives
    • Shi S.-R., Cote R.J., Taylor C.R. Antigen retrieval techniques: current perspectives. J Histochem Cytochem 2001, 49:931-938.
    • (2001) J Histochem Cytochem , vol.49 , pp. 931-938
    • Shi, S.-R.1    Cote, R.J.2    Taylor, C.R.3
  • 6
    • 0942287720 scopus 로고    scopus 로고
    • A molecular mechanism of formalin fixation and antigen retrieval
    • Sompuram S.R., Vani K., Messana E., Bogen S.A. A molecular mechanism of formalin fixation and antigen retrieval. Am J Clin Pathol 2004, 121:190-199.
    • (2004) Am J Clin Pathol , vol.121 , pp. 190-199
    • Sompuram, S.R.1    Vani, K.2    Messana, E.3    Bogen, S.A.4
  • 7
    • 33845787470 scopus 로고    scopus 로고
    • Heat-induced antigen retrieval: mechanisms and application to histochemistry
    • Yamashita S. Heat-induced antigen retrieval: mechanisms and application to histochemistry. Prog Histochem Cytochem 2007, 41:141-200.
    • (2007) Prog Histochem Cytochem , vol.41 , pp. 141-200
    • Yamashita, S.1
  • 8
    • 70449397913 scopus 로고    scopus 로고
    • Molecular mechanisms of antigen retrieval: antigen retrieval reverses steric interference caused by formalin-induced cross-links
    • Bogen S.A., Vani K., Sompuram S.R. Molecular mechanisms of antigen retrieval: antigen retrieval reverses steric interference caused by formalin-induced cross-links. Biotech Histochem 2009, 84:207-215.
    • (2009) Biotech Histochem , vol.84 , pp. 207-215
    • Bogen, S.A.1    Vani, K.2    Sompuram, S.R.3
  • 9
    • 14444276493 scopus 로고    scopus 로고
    • Extraction and analysis of diagnostically useful proteins from formalin-fixed, paraffin-embedded tissue sections
    • Ikeda K., Monden T., Kanoh T., Tsujie M., Izawa H., Haba A., et al. Extraction and analysis of diagnostically useful proteins from formalin-fixed, paraffin-embedded tissue sections. J Histochem Cytochem 1998, 46:397-404.
    • (1998) J Histochem Cytochem , vol.46 , pp. 397-404
    • Ikeda, K.1    Monden, T.2    Kanoh, T.3    Tsujie, M.4    Izawa, H.5    Haba, A.6
  • 11
    • 33646698472 scopus 로고    scopus 로고
    • Protein extraction from formalin-fixed, paraffin-embedded tissue sections: quality evaluation by mass spectrometry
    • Shi S.-R., Liu C., Balgley B.M., Lee C., Taylor C.R. Protein extraction from formalin-fixed, paraffin-embedded tissue sections: quality evaluation by mass spectrometry. J Histochem Cytochem 2006, 54:739-743.
    • (2006) J Histochem Cytochem , vol.54 , pp. 739-743
    • Shi, S.-R.1    Liu, C.2    Balgley, B.M.3    Lee, C.4    Taylor, C.R.5
  • 12
    • 33947572920 scopus 로고    scopus 로고
    • Development of efficient protein extraction methods for shotgun proteome analysis of formalin-fixed tissues
    • Jiang X., Jiang X., Feng S., Tian R., Ye M., Zou H. Development of efficient protein extraction methods for shotgun proteome analysis of formalin-fixed tissues. J Proteome Res 2007, 6:1038-1047.
    • (2007) J Proteome Res , vol.6 , pp. 1038-1047
    • Jiang, X.1    Jiang, X.2    Feng, S.3    Tian, R.4    Ye, M.5    Zou, H.6
  • 13
    • 33846629961 scopus 로고    scopus 로고
    • Quantitative protein analysis from formalin-fixed tissues: implications for translational clinical research and nanoscale molecular diagnosis
    • Becker K.F., Schott C., Hipp S., Metzger V., Porschewski P., Beck R., et al. Quantitative protein analysis from formalin-fixed tissues: implications for translational clinical research and nanoscale molecular diagnosis. J Pathol 2007, 211:370-378.
    • (2007) J Pathol , vol.211 , pp. 370-378
    • Becker, K.F.1    Schott, C.2    Hipp, S.3    Metzger, V.4    Porschewski, P.5    Beck, R.6
  • 14
    • 44449101783 scopus 로고    scopus 로고
    • Antigen retrieval for proteomic characterization of formalin-fixed and paraffin-embedded tissues
    • Xu H., Yang L., Wang W., Shi S.-R., Liu C., Liu Y., et al. Antigen retrieval for proteomic characterization of formalin-fixed and paraffin-embedded tissues. J Proteome Res 2008, 7:1098-1108.
    • (2008) J Proteome Res , vol.7 , pp. 1098-1108
    • Xu, H.1    Yang, L.2    Wang, W.3    Shi, S.-R.4    Liu, C.5    Liu, Y.6
  • 15
    • 62849124399 scopus 로고    scopus 로고
    • Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting
    • Nirmalan N.J., Harnden P., Selby P.J., Banks R.E. Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting. J Pathol 2009, 217:497-506.
    • (2009) J Pathol , vol.217 , pp. 497-506
    • Nirmalan, N.J.1    Harnden, P.2    Selby, P.J.3    Banks, R.E.4
  • 16
    • 71049141298 scopus 로고    scopus 로고
    • Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis
    • Sprung R.W., Brock J.W.C., Tanksley J.P., Li M., Washington M.K., Slebos R.J.C., et al. Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis. Mol Cell Proteomics 2009, 8:1988-1998.
    • (2009) Mol Cell Proteomics , vol.8 , pp. 1988-1998
    • Sprung, R.W.1    Brock, J.W.C.2    Tanksley, J.P.3    Li, M.4    Washington, M.K.5    Slebos, R.J.C.6
  • 17
    • 77954378942 scopus 로고    scopus 로고
    • Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry
    • Ostasiewicz P., Zielinska D.F., Mann M., Wiśniewski J.R. Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry. J Proteome Res 2010, 9:3688-3700.
    • (2010) J Proteome Res , vol.9 , pp. 3688-3700
    • Ostasiewicz, P.1    Zielinska, D.F.2    Mann, M.3    Wiśniewski, J.R.4
  • 18
    • 77952764025 scopus 로고    scopus 로고
    • Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry
    • Xiao Z., Li G., Chen Y., Li M., Peng F., Li C., et al. Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry. J Histochem Cytochem 2010, 58:517-527.
    • (2010) J Histochem Cytochem , vol.58 , pp. 517-527
    • Xiao, Z.1    Li, G.2    Chen, Y.3    Li, M.4    Peng, F.5    Li, C.6
  • 19
    • 68549098247 scopus 로고    scopus 로고
    • Generation of high-quality protein extracts from formalin-fixed, paraffin-embedded tissues
    • Addis M.F., Tanca A., Pagnozzi D., Crobu S., Fanciulli G., Cossu-Rocca P., et al. Generation of high-quality protein extracts from formalin-fixed, paraffin-embedded tissues. Proteomics 2009, 9:3815-3823.
    • (2009) Proteomics , vol.9 , pp. 3815-3823
    • Addis, M.F.1    Tanca, A.2    Pagnozzi, D.3    Crobu, S.4    Fanciulli, G.5    Cossu-Rocca, P.6
  • 20
    • 70349136284 scopus 로고    scopus 로고
    • 2-D PAGE and MS analysis of proteins from formalin-fixed, paraffin-embedded tissues
    • Addis M.F., Tanca A., Pagnozzi D., Rocca S., Uzzau S. 2-D PAGE and MS analysis of proteins from formalin-fixed, paraffin-embedded tissues. Proteomics 2009, 9:4329-4339.
    • (2009) Proteomics , vol.9 , pp. 4329-4339
    • Addis, M.F.1    Tanca, A.2    Pagnozzi, D.3    Rocca, S.4    Uzzau, S.5
  • 21
    • 79951731085 scopus 로고    scopus 로고
    • Application of 2-D DIGE to formalin-fixed, paraffin-embedded tissues
    • Tanca A., Pagnozzi D., Falchi G., Tonelli R., Rocca S., Roggio T., et al. Application of 2-D DIGE to formalin-fixed, paraffin-embedded tissues. Proteomics 2011, 11:1005-1011.
    • (2011) Proteomics , vol.11 , pp. 1005-1011
    • Tanca, A.1    Pagnozzi, D.2    Falchi, G.3    Tonelli, R.4    Rocca, S.5    Roggio, T.6
  • 23
    • 44149119998 scopus 로고    scopus 로고
    • Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions
    • Toews J., Rogalski J., Clark T., Kast J. Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions. Anal Chim Acta 2008, 618:168-183.
    • (2008) Anal Chim Acta , vol.618 , pp. 168-183
    • Toews, J.1    Rogalski, J.2    Clark, T.3    Kast, J.4
  • 24
    • 33646908503 scopus 로고    scopus 로고
    • Identification of formaldehyde-induced modifications in proteins: reactions with insulin
    • Metz B., Kersten G.F.A., Baart G.J.E., de Jong A., Meiring H., ten Hove J., et al. Identification of formaldehyde-induced modifications in proteins: reactions with insulin. Bioconjug Chem 2006, 17:815-822.
    • (2006) Bioconjug Chem , vol.17 , pp. 815-822
    • Metz, B.1    Kersten, G.F.A.2    Baart, G.J.E.3    de Jong, A.4    Meiring, H.5    ten Hove, J.6
  • 25
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227:680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 26
    • 78651516681 scopus 로고    scopus 로고
    • Proteomic analysis of formalin-fixed, paraffin-embedded lung neuroendocrine tumor samples from hospital archives
    • Tanca A., Addis M.F., Pagnozzi D., Cossu-Rocca P., Tonelli R., Falchi G., et al. Proteomic analysis of formalin-fixed, paraffin-embedded lung neuroendocrine tumor samples from hospital archives. J Proteomics 2011, 74:359-370.
    • (2011) J Proteomics , vol.74 , pp. 359-370
    • Tanca, A.1    Addis, M.F.2    Pagnozzi, D.3    Cossu-Rocca, P.4    Tonelli, R.5    Falchi, G.6
  • 28
    • 58149295188 scopus 로고    scopus 로고
    • Label-free quantitative analysis of one-dimensional PAGE LC/MS/MS proteome: application on angiotensin II-stimulated smooth muscle cells secretome
    • Gao B.B., Stuart L., Feener E.P. Label-free quantitative analysis of one-dimensional PAGE LC/MS/MS proteome: application on angiotensin II-stimulated smooth muscle cells secretome. Mol Cell Proteomics 2008, 7:2399-2409.
    • (2008) Mol Cell Proteomics , vol.7 , pp. 2399-2409
    • Gao, B.B.1    Stuart, L.2    Feener, E.P.3
  • 29
    • 77956108790 scopus 로고    scopus 로고
    • MTRAQ-based quantification of potential endometrial carcinoma biomarkers from archived formalin-fixed paraffin-embedded tissues
    • DeSouza L.V., Krakovska O., Darfler M.M., Krizman D.B., Romaschin A.D., Colgan T.J., et al. mTRAQ-based quantification of potential endometrial carcinoma biomarkers from archived formalin-fixed paraffin-embedded tissues. Proteomics 2010, 10:3108-3116.
    • (2010) Proteomics , vol.10 , pp. 3108-3116
    • DeSouza, L.V.1    Krakovska, O.2    Darfler, M.M.3    Krizman, D.B.4    Romaschin, A.D.5    Colgan, T.J.6
  • 30
    • 34248230245 scopus 로고    scopus 로고
    • Direct analysis and MALDI imaging of formalin-fixed, paraffin-embedded tissue sections
    • Lemaire R., Desmons A., Tabet J.C., Day R., Salzet M., Fournier I. Direct analysis and MALDI imaging of formalin-fixed, paraffin-embedded tissue sections. J Proteome Res 2007, 6:1295-1305.
    • (2007) J Proteome Res , vol.6 , pp. 1295-1305
    • Lemaire, R.1    Desmons, A.2    Tabet, J.C.3    Day, R.4    Salzet, M.5    Fournier, I.6


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