Comparison of different tissue sampling methods for protein extraction from formalin-fixed and paraffin-embedded tissue specimens

Experimental and Molecular Pathology

Volumn 88, Issue 1, 2010, Pages 190-196

  Gräntzdörffer, Ilona ^a   Yumlu, Saniye ^a   Gioeva, Zarina ^a   von Wasielewski, Reinhard ^b   Ebert, Matthias P A ^c   Röcken, Christoph ^a,d  

^a CHARITÉ UNIVERSITÄTSMEDIZIN BERLIN   (Germany)

^b HANNOVER MEDICAL SCHOOL   (Germany)

^c TECHNICAL UNIVERSITY OF MUNICH   (Germany)

^d UNIVERSITY OF KIEL   (Germany)

Author keywords

Formalin fixed and paraffin embedded material; Fresh frozen material; Pancreatic cancer; Protein extraction

Indexed keywords

FORMALDEHYDE; LIPOCORTIN 1; PARAFFIN; PROTEIN;

ADULT; AGED; ARTICLE; CONTROLLED STUDY; EMBEDDING; FEMALE; FROZEN SECTION; HISTOPATHOLOGY; HUMAN; HUMAN CELL; HUMAN TISSUE; INTERMETHOD COMPARISON; MAJOR CLINICAL STUDY; MALE; MOLECULAR WEIGHT; PANCREAS ADENOCARCINOMA; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN ISOLATION; REPRODUCIBILITY; SAMPLING; STANDARDIZATION; TISSUE FIXATION; TISSUE MICROARRAY; WESTERN BLOTTING;

ADULT; AGED; AUTOLYSIS; BLOTTING, WESTERN; CARCINOMA, PANCREATIC DUCTAL; CRYOPRESERVATION; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; FEMALE; FIXATIVES; FORMALDEHYDE; HUMANS; IMMUNOHISTOCHEMISTRY; MALE; MIDDLE AGED; PANCREATIC NEOPLASMS; PARAFFIN EMBEDDING; PROTEINS; PROTEOMICS; TISSUE FIXATION; TISSUE PRESERVATION;

EID: 74749107023     PISSN: 00144800     EISSN: 10960945     Source Type: Journal    
DOI: 10.1016/j.yexmp.2009.09.009     Document Type: Article

References (23)

1. Bai X.F., Ni X.G., Zhao P., Liu S.M., Wang H.X., Guo B., Zhou L.P., Liu F., Zhang J.S., Wang K., Xie Y.Q., Shao Y.F., and Zhao X.H. Overexpression of annexin 1 in pancreatic cancer and its clinical significance. World J. Gastroenterol. 10 10 (2004) 1466-1470
2. Becker K.F., Schott C., Hipp S., Metzger V., Porschewski P., Beck R., Nährig J., Becker I., and Höfler H. Quantitative protein analysis from formalin-fixed tissues: implications for translational clinical research and nanoscale molecular diagnosis. J. Pathol. 211 (2007) 370-378
3. Chen R., Yi E.C., Donohoe S., Pan S., Eng J., Cooke K., Crispin D.A., Lane Z., Goodlett D.R., Bronner M.P., Aebersold R., and Brentnall T.A. Pancreatic cancer proteome: the proteins that underlie invasion, metastasis, and immunologic escape. Gastroenterology 129 4 (2005) 1187-1197
4. Chu W.S., Liang Q., Liu J., Wei M.Q., Winters M., Liotta L., Sandberg G., and Gong M. A non-destructive molecule extraction method allowing morphological and molecular analyses using a single tissue section. Lab. Invest. 85 (2005) 1416-1428
5. Crockett D.K., Lin Z., Vaughn C.P., Lim M.S., and Elenitoba-Johnson K.S. Identification of proteins from formalin-fixed paraffin-embedded cells by LC-MS/MS. Lab. Invest. 85 11 (2005) 1405-1415
6. Fowler C.B., Cunningham R.E., O'Leary T.J., and Mason J.T. 'Tissue surrogates' as a model for archival formalin-fixed paraffin-embedded tissues. Lab. Invest. 87 (2007)
7. Fowler C.B., Cunningham R.E., Waybright T.J., Blonder J., Veenstra T.D., O'Leary T.J., and Mason J.T. Elevated hydrostatic pressure promotes protein recovery from formalin-fixed, paraffin-embedded tissue surrogates. Lab. Invest. 88 (2008) 185-195
8. Gräntzdörffer I., Carl-McGrath S., Ebert M., and Röcken C. Proteomics of pancreatic cancer-a review. Pancreas 36 45 (2008) 329-336
9. Gronborg M., Bunkenborg J., Kristiansen T.Z., Jensen O.N., Yeo C.J., Hruban R.H., Maitra A., Goggins M.G., and Pandey A. Comprehensive proteomic analysis of human pancreatic juice. J. Proteome Res. 3 5 (2004) 1042-1055
10. Guo T., Wang W., Rudnick P.A., Song T., Li J., Zhuang Z., Weil R.J., DeVoe D.L., Lee C.S., and Balgley B.M. Proteome analysis of microdissected formalin-fixed and paraffin-embedded tissue specimens. J. Histochem. Cytochem. 55 (2007) 763-772
11. Hood B.L., Darfler M.M., Guiel T.G., Furusato B., Lucas D.A., Ringeisen B.R., Sesterhenn I.A., Conrads T.P., Veenstra T.D., and Krizman D.B. Proteomic analysis of formalin-fixed prostate cancer tissue. Mol. Cell. Prot. 4 11 (2005) 1741-1753
12. Hood B.L., Conrads T.P., and Veenstra T.D. Unravelling the proteome of formalin-fixed paraffin-embedded tissue. Brief Funct. Genomic. Proteomic. 5 (2006) 169-175
13. Hu L., Evers S., Lu Z.H., Shen Y., and Chen J. Two-dimensional protein database of human pancreas. Electrophoresis 25 3 (2004) 512-518
14. Ikeda K., Monden T., Kanoh N., Tsujie M., Izawa H., Haba A., Ohnishi T., Sekimoto M., Tomita N., Shiozaki H., and Monden M. Extraction and analysis of diagnostically useful proteins from formalin-fixed, paraffin-embedded tissue sections. J. Histochem. Cytochem. 46 3 (1998) 397-403
15. Kaplan B., Martin B.M., Livneh A., Pras M., and Gallo G.R. Biochemical subtyping of amyloid in formalin-fixed tissue samples confirms and supplements immunohistologic data. Am. J. Clin. Pathol. 121 6 (2004) 794-800
16. Kroll J., Becker K.F., Kuphal S., Hein R., Hofstädter F., and Bosserhof A.K. Isolation of high quality protein samples from punches of formalin fixed and paraffin embedded tissue blocks. Histol. Histopathol. 23 (2008) 391-395
17. Lemaire R., Desmons A., Tabet J.C., Day R., Salzet M., and Fournier I. Direct analysis and MALDI imaging of formalin-fixed, paraffin-embedded tissues. J. Proteome Res. 6 4 (2007) 1295-1305
18. Lu Z., Hu L., Evers S., Chen J., and Shen Y. Differential expression profiling of human pancreatic adenocarcinoma and healthy pancreatic tissue. Proteomics 4 12 (2004) 3975-3988
19. Massey-Harroche D., Mayran N., and Maroux S. Polarized localizations of annexins I, II, VI and XIII in epithelial cells of intestinal, hepatic and pancreatic tissues. J. Cell. Sci. 111 (1998) 3007-3015
20. Palmer-Toy D.E., Krastins B., Sarracino D.A., Nadol Jr. J.B., and Merchant S.N. Efficient method for the proteomic analysis of fixed and embedded tissue. J. Proteome. Res. 4 6 (2005) 2404-2411
21. Röcken C., and Wilhelm S. Influence of tissue fixation on the microextraction and identification of amyloid proteins. J. Lab. Clin. Med. 146 4 (2005) 244-250
22. Shi S.R., Liu C., Balgley B.M., Lee C., and Taylor C.R. Protein extraction from formalin-fixed, paraffin-embedded tissue sections: quality evaluation by mass spectrometry. J. Histochem. Cytochem. 54 6 (2006) 739-743
23. Wang K.L., Wu T.T., Resetkova E., Wang H., Correa A.M., Hofstetter W.L., Swisher S.G., Ajani J.A., Rashid A., Hamilton S.R., and Albarracin C.T. Expression of annexin A1 in esophageal and esophagogastric junction adenocarcinomas: association with poor outcome. Clin. Cancer Res. 12 15 (2006) 4598-4604