-
1
-
-
0034614490
-
Signaling - 2000 and beyond
-
Hunter, T. Signaling - 2000 and beyond Cell 2000, 100 (1) 113-127
-
(2000)
Cell
, vol.100
, Issue.1
, pp. 113-127
-
-
Hunter, T.1
-
2
-
-
63749113783
-
Tyrosine phosphorylation: Thirty years and counting
-
Hunter, T. Tyrosine phosphorylation: thirty years and counting Curr. Opin. Cell Biol. 2009, 21 (2) 140-146
-
(2009)
Curr. Opin. Cell Biol.
, vol.21
, Issue.2
, pp. 140-146
-
-
Hunter, T.1
-
3
-
-
20444383859
-
Protein phosphorylation in signaling - 50 years and counting
-
Pawson, T.; Scott, J. D. Protein phosphorylation in signaling - 50 years and counting Trends Biochem. Sci. 2005, 30 (6) 286-290
-
(2005)
Trends Biochem. Sci.
, vol.30
, Issue.6
, pp. 286-290
-
-
Pawson, T.1
Scott, J.D.2
-
4
-
-
4043181214
-
Cancer genes and the pathways they control
-
Vogelstein, B.; Kinzler, K. W. Cancer genes and the pathways they control Nat. Med. 2004, 10 (8) 789-799
-
(2004)
Nat. Med.
, vol.10
, Issue.8
, pp. 789-799
-
-
Vogelstein, B.1
Kinzler, K.W.2
-
5
-
-
84875497134
-
Metabolomic profiling of lung and prostate tumor tissues by capillary electrophoresis time-of-flight mass spectrometry
-
Kami, K.; Fujimori, T.; Sato, H.; Sato, M.; Yamamoto, H.; Ohashi, Y.; Sugiyama, N.; Ishihama, Y.; Onozuka, H.; Ochiai, A.; Esumi, H.; Soga, T.; Tomita, M. Metabolomic profiling of lung and prostate tumor tissues by capillary electrophoresis time-of-flight mass spectrometry Metabolomics 2013, 9 (2) 444-453
-
(2013)
Metabolomics
, vol.9
, Issue.2
, pp. 444-453
-
-
Kami, K.1
Fujimori, T.2
Sato, H.3
Sato, M.4
Yamamoto, H.5
Ohashi, Y.6
Sugiyama, N.7
Ishihama, Y.8
Onozuka, H.9
Ochiai, A.10
Esumi, H.11
Soga, T.12
Tomita, M.13
-
6
-
-
36849065315
-
Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer
-
Rikova, K.; Guo, A.; Zeng, Q.; Possemato, A.; Yu, J.; Haack, H.; Nardone, J.; Lee, K.; Reeves, C.; Li, Y.; Hu, Y.; Tan, Z.; Stokes, M.; Sullivan, L.; Mitchell, J.; Wetzel, R.; Macneill, J.; Ren, J. M.; Yuan, J.; Bakalarski, C. E.; Villen, J.; Kornhauser, J. M.; Smith, B.; Li, D.; Zhou, X.; Gygi, S. P.; Gu, T. L.; Polakiewicz, R. D.; Rush, J.; Comb, M. J. Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer Cell 2007, 131 (6) 1190-1203
-
(2007)
Cell
, vol.131
, Issue.6
, pp. 1190-1203
-
-
Rikova, K.1
Guo, A.2
Zeng, Q.3
Possemato, A.4
Yu, J.5
Haack, H.6
Nardone, J.7
Lee, K.8
Reeves, C.9
Li, Y.10
Hu, Y.11
Tan, Z.12
Stokes, M.13
Sullivan, L.14
Mitchell, J.15
Wetzel, R.16
MacNeill, J.17
Ren, J.M.18
Yuan, J.19
Bakalarski, C.E.20
Villen, J.21
Kornhauser, J.M.22
Smith, B.23
Li, D.24
Zhou, X.25
Gygi, S.P.26
Gu, T.L.27
Polakiewicz, R.D.28
Rush, J.29
Comb, M.J.30
more..
-
7
-
-
0036198435
-
Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae
-
Ficarro, S. B.; McCleland, M. L.; Stukenberg, P. T.; Burke, D. J.; Ross, M. M.; Shabanowitz, J.; Hunt, D. F.; White, F. M. Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae Nat. Biotechnol. 2002, 20 (3) 301-305
-
(2002)
Nat. Biotechnol.
, vol.20
, Issue.3
, pp. 301-305
-
-
Ficarro, S.B.1
McCleland, M.L.2
Stukenberg, P.T.3
Burke, D.J.4
Ross, M.M.5
Shabanowitz, J.6
Hunt, D.F.7
White, F.M.8
-
8
-
-
0842299091
-
Identification of novel phosphorylation sites on Xenopus laevis Aurora A and analysis of phosphopeptide enrichment by immobilized metal-affinity chromatography
-
Haydon, C. E.; Eyers, P. A.; Aveline-Wolf, L. D.; Resing, K. A.; Maller, J. L.; Ahn, N. G. Identification of novel phosphorylation sites on Xenopus laevis Aurora A and analysis of phosphopeptide enrichment by immobilized metal-affinity chromatography Mol. Cell Proteomics 2003, 2 (10) 1055-1067
-
(2003)
Mol. Cell Proteomics
, vol.2
, Issue.10
, pp. 1055-1067
-
-
Haydon, C.E.1
Eyers, P.A.2
Aveline-Wolf, L.D.3
Resing, K.A.4
Maller, J.L.5
Ahn, N.G.6
-
9
-
-
23744460968
-
Specificity of immobilized metal affinity-based IMAC/C18 tip enrichment of phosphopeptides for protein phosphorylation analysis
-
Kokubu, M.; Ishihama, Y.; Sato, T.; Nagasu, T.; Oda, Y. Specificity of immobilized metal affinity-based IMAC/C18 tip enrichment of phosphopeptides for protein phosphorylation analysis Anal. Chem. 2005, 77 (16) 5144-5154
-
(2005)
Anal. Chem.
, vol.77
, Issue.16
, pp. 5144-5154
-
-
Kokubu, M.1
Ishihama, Y.2
Sato, T.3
Nagasu, T.4
Oda, Y.5
-
10
-
-
33750112777
-
Improved immobilized metal affinity chromatography for large-scale phosphoproteomics applications
-
Ndassa, Y. M.; Orsi, C.; Marto, J. A.; Chen, S.; Ross, M. M. Improved immobilized metal affinity chromatography for large-scale phosphoproteomics applications J. Proteome Res. 2006, 5 (10) 2789-2799
-
(2006)
J. Proteome Res.
, vol.5
, Issue.10
, pp. 2789-2799
-
-
Ndassa, Y.M.1
Orsi, C.2
Marto, J.A.3
Chen, S.4
Ross, M.M.5
-
11
-
-
0035258256
-
Characterization of phosphoproteins from electrophoretic gels by nanoscale Fe(III) affinity chromatography with off-line mass spectrometry analysis
-
Stensballe, A.; Andersen, S.; Jensen, O. N. Characterization of phosphoproteins from electrophoretic gels by nanoscale Fe(III) affinity chromatography with off-line mass spectrometry analysis Proteomics 2001, 1 (2) 207-222
-
(2001)
Proteomics
, vol.1
, Issue.2
, pp. 207-222
-
-
Stensballe, A.1
Andersen, S.2
Jensen, O.N.3
-
12
-
-
0031516809
-
Determination of organic phosphates by column-switching high performance anion-exchange chromatography using on-line preconcentration on titania
-
Ikeguchi, Y.; Nakamura, H. Determination of organic phosphates by column-switching high performance anion-exchange chromatography using on-line preconcentration on titania Anal. Sci. 1997, 13 (3) 479-483
-
(1997)
Anal. Sci.
, vol.13
, Issue.3
, pp. 479-483
-
-
Ikeguchi, Y.1
Nakamura, H.2
-
13
-
-
33645217942
-
Selective zirconium dioxide-based enrichment of phosphorylated peptides for mass spectrometric analysis
-
Kweon, H. K.; Hakansson, K. Selective zirconium dioxide-based enrichment of phosphorylated peptides for mass spectrometric analysis Anal. Chem. 2006, 78 (6) 1743-1749
-
(2006)
Anal. Chem.
, vol.78
, Issue.6
, pp. 1743-1749
-
-
Kweon, H.K.1
Hakansson, K.2
-
14
-
-
24944519450
-
Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns
-
Larsen, M. R.; Thingholm, T. E.; Jensen, O. N.; Roepstorff, P.; Jorgensen, T. J. Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns Mol. Cell Proteomics 2005, 4 (7) 873-886
-
(2005)
Mol. Cell Proteomics
, vol.4
, Issue.7
, pp. 873-886
-
-
Larsen, M.R.1
Thingholm, T.E.2
Jensen, O.N.3
Roepstorff, P.4
Jorgensen, T.J.5
-
15
-
-
3242688830
-
Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-NanoLC-ESI-MS/MS and titanium oxide precolumns
-
Pinkse, M. W.; Uitto, P. M.; Hilhorst, M. J.; Ooms, B.; Heck, A. J. Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-NanoLC-ESI-MS/MS and titanium oxide precolumns Anal. Chem. 2004, 76 (14) 3935-3943
-
(2004)
Anal. Chem.
, vol.76
, Issue.14
, pp. 3935-3943
-
-
Pinkse, M.W.1
Uitto, P.M.2
Hilhorst, M.J.3
Ooms, B.4
Heck, A.J.5
-
16
-
-
34548183872
-
Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips
-
Rappsilber, J.; Mann, M.; Ishihama, Y. Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips Nat. Protoc. 2007, 2 (8) 1896-1906
-
(2007)
Nat. Protoc.
, vol.2
, Issue.8
, pp. 1896-1906
-
-
Rappsilber, J.1
Mann, M.2
Ishihama, Y.3
-
17
-
-
34347403192
-
Phosphopeptide enrichment by aliphatic hydroxy acid-modified metal oxide chromatography for nano-LC-MS/MS in proteomics applications
-
Sugiyama, N.; Masuda, T.; Shinoda, K.; Nakamura, A.; Tomita, M.; Ishihama, Y. Phosphopeptide enrichment by aliphatic hydroxy acid-modified metal oxide chromatography for nano-LC-MS/MS in proteomics applications Mol. Cell Proteomics 2007, 6 (6) 1103-1109
-
(2007)
Mol. Cell Proteomics
, vol.6
, Issue.6
, pp. 1103-1109
-
-
Sugiyama, N.1
Masuda, T.2
Shinoda, K.3
Nakamura, A.4
Tomita, M.5
Ishihama, Y.6
-
18
-
-
28444487185
-
Enrichment of phosphorylated proteins and peptides from complex mixtures using metal oxide/hydroxide affinity chromatography (MOAC)
-
Wolschin, F.; Wienkoop, S.; Weckwerth, W. Enrichment of phosphorylated proteins and peptides from complex mixtures using metal oxide/hydroxide affinity chromatography (MOAC) Proteomics 2005, 5 (17) 4389-4397
-
(2005)
Proteomics
, vol.5
, Issue.17
, pp. 4389-4397
-
-
Wolschin, F.1
Wienkoop, S.2
Weckwerth, W.3
-
19
-
-
5644259649
-
Phosphopeptide-selective column-switching RP-HPLC with a titania precolumn
-
Kuroda, I.; Shintani, Y.; Motokawa, M.; Abe, S.; Furuno, M. Phosphopeptide-selective column-switching RP-HPLC with a titania precolumn Anal. Sci. 2004, 20 (9) 1313-1319
-
(2004)
Anal. Sci.
, vol.20
, Issue.9
, pp. 1313-1319
-
-
Kuroda, I.1
Shintani, Y.2
Motokawa, M.3
Abe, S.4
Furuno, M.5
-
20
-
-
3042575877
-
Titania as a chemo-affinity support for the column-switching HPLC analysis of phosphopeptides: Application to the characterization of phosphorylation sites in proteins by combination with protease digestion and electrospray ionization mass spectrometry
-
Sano, A.; Nakamura, H. Titania as a chemo-affinity support for the column-switching HPLC analysis of phosphopeptides: application to the characterization of phosphorylation sites in proteins by combination with protease digestion and electrospray ionization mass spectrometry Anal. Sci. 2004, 20 (5) 861-864
-
(2004)
Anal. Sci.
, vol.20
, Issue.5
, pp. 861-864
-
-
Sano, A.1
Nakamura, H.2
-
21
-
-
55949129082
-
Successive and selective release of phosphorylated peptides captured by hydroxy acid-modified metal oxide chromatography
-
Kyono, Y.; Sugiyama, N.; Imami, K.; Tomita, M.; Ishihama, Y. Successive and selective release of phosphorylated peptides captured by hydroxy acid-modified metal oxide chromatography J. Proteome Res. 2008, 7 (10) 4585-4593
-
(2008)
J. Proteome Res.
, vol.7
, Issue.10
, pp. 4585-4593
-
-
Kyono, Y.1
Sugiyama, N.2
Imami, K.3
Tomita, M.4
Ishihama, Y.5
-
22
-
-
49449085504
-
A quantitative atlas of mitotic phosphorylation
-
Dephoure, N.; Zhou, C.; Villen, J.; Beausoleil, S. A.; Bakalarski, C. E.; Elledge, S. J.; Gygi, S. P. A quantitative atlas of mitotic phosphorylation Proc. Natl. Acad. Sci. U. S. A. 2008, 105 (31) 10762-10767
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, Issue.31
, pp. 10762-10767
-
-
Dephoure, N.1
Zhou, C.2
Villen, J.3
Beausoleil, S.A.4
Bakalarski, C.E.5
Elledge, S.J.6
Gygi, S.P.7
-
23
-
-
77951644400
-
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
-
Olsen, J. V.; Vermeulen, M.; Santamaria, A.; Kumar, C.; Miller, M. L.; Jensen, L. J.; Gnad, F.; Cox, J.; Jensen, T. S.; Nigg, E. A.; Brunak, S.; Mann, M. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis Sci. Signal 2010, 3 (104) ra3
-
(2010)
Sci. Signal
, vol.3
, Issue.104
, pp. 3
-
-
Olsen, J.V.1
Vermeulen, M.2
Santamaria, A.3
Kumar, C.4
Miller, M.L.5
Jensen, L.J.6
Gnad, F.7
Cox, J.8
Jensen, T.S.9
Nigg, E.A.10
Brunak, S.11
Mann, M.12
-
24
-
-
78650466243
-
A tissue-specific atlas of mouse protein phosphorylation and expression
-
Huttlin, E. L.; Jedrychowski, M. P.; Elias, J. E.; Goswami, T.; Rad, R.; Beausoleil, S. A.; Villen, J.; Haas, W.; Sowa, M. E.; Gygi, S. P. A tissue-specific atlas of mouse protein phosphorylation and expression Cell 2010, 143 (7) 1174-1189
-
(2010)
Cell
, vol.143
, Issue.7
, pp. 1174-1189
-
-
Huttlin, E.L.1
Jedrychowski, M.P.2
Elias, J.E.3
Goswami, T.4
Rad, R.5
Beausoleil, S.A.6
Villen, J.7
Haas, W.8
Sowa, M.E.9
Gygi, S.P.10
-
25
-
-
84863323068
-
Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues
-
Lundby, A.; Secher, A.; Lage, K.; Nordsborg, N. B.; Dmytriyev, A.; Lundby, C.; Olsen, J. V. Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues Nat. Commun. 2012, 3, 876
-
(2012)
Nat. Commun.
, vol.3
, pp. 876
-
-
Lundby, A.1
Secher, A.2
Lage, K.3
Nordsborg, N.B.4
Dmytriyev, A.5
Lundby, C.6
Olsen, J.V.7
-
26
-
-
84879390233
-
Identification of missing proteins in the neXtProt database and unregistered phosphopeptides in the PhosphoSitePlus database as part of the Chromosome-centric Human Proteome Project
-
Shiromizu, T.; Adachi, J.; Watanabe, S.; Murakami, T.; Kuga, T.; Muraoka, S.; Tomonaga, T. Identification of missing proteins in the neXtProt database and unregistered phosphopeptides in the PhosphoSitePlus database as part of the Chromosome-centric Human Proteome Project J. Proteome Res. 2013, 12 (6) 2414-2421
-
(2013)
J. Proteome Res.
, vol.12
, Issue.6
, pp. 2414-2421
-
-
Shiromizu, T.1
Adachi, J.2
Watanabe, S.3
Murakami, T.4
Kuga, T.5
Muraoka, S.6
Tomonaga, T.7
-
27
-
-
28644451439
-
Proteomic analysis of formalin-fixed prostate cancer tissue
-
Hood, B. L.; Darfler, M. M.; Guiel, T. G.; Furusato, B.; Lucas, D. A.; Ringeisen, B. R.; Sesterhenn, I. A.; Conrads, T. P.; Veenstra, T. D.; Krizman, D. B. Proteomic analysis of formalin-fixed prostate cancer tissue Mol. Cell Proteomics 2005, 4 (11) 1741-1753
-
(2005)
Mol. Cell Proteomics
, vol.4
, Issue.11
, pp. 1741-1753
-
-
Hood, B.L.1
Darfler, M.M.2
Guiel, T.G.3
Furusato, B.4
Lucas, D.A.5
Ringeisen, B.R.6
Sesterhenn, I.A.7
Conrads, T.P.8
Veenstra, T.D.9
Krizman, D.B.10
-
28
-
-
84859965675
-
Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues
-
Magdeldin, S.; Yamamoto, T. Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues Proteomics 2012, 12 (7) 1045-1058
-
(2012)
Proteomics
, vol.12
, Issue.7
, pp. 1045-1058
-
-
Magdeldin, S.1
Yamamoto, T.2
-
29
-
-
27144511949
-
Liquid Tissue: Proteomic profiling of formalin-fixed tissues
-
Suppl, 32-5.
-
Prieto, D. A.; Hood, B. L.; Darfler, M. M.; Guiel, T. G.; Lucas, D. A.; Conrads, T. P.; Veenstra, T. D.; Krizman, D. B., Liquid Tissue: proteomic profiling of formalin-fixed tissues. Biotechniques 2005, Suppl, 32-5.
-
(2005)
Biotechniques
-
-
Prieto, D.A.1
Hood, B.L.2
Darfler, M.M.3
Guiel, T.G.4
Lucas, D.A.5
Conrads, T.P.6
Veenstra, T.D.7
Krizman, D.B.8
-
30
-
-
77950813992
-
Extraction of proteins from formalin-fixed, paraffin-embedded tissue using the Qproteome extraction technique and preparation of tryptic peptides for liquid chromatography/mass spectrometry analysis
-
Chapter 10, Unit, issue
-
Geoui, T.; Urlaub, H.; Plessmann, U.; Porschewski, P. Extraction of proteins from formalin-fixed, paraffin-embedded tissue using the Qproteome extraction technique and preparation of tryptic peptides for liquid chromatography/mass spectrometry analysis. Curr. Protoc. Mol. Biol. 2010, Chapter 10, Unit 10, issue 27, pp 1-12.
-
(2010)
Curr. Protoc. Mol. Biol.
, vol.10
, Issue.27
, pp. 1-12
-
-
Geoui, T.1
Urlaub, H.2
Plessmann, U.3
Porschewski, P.4
-
31
-
-
79955448303
-
Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker investigations
-
Nirmalan, N. J.; Hughes, C.; Peng, J.; McKenna, T.; Langridge, J.; Cairns, D. A.; Harnden, P.; Selby, P. J.; Banks, R. E. Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker investigations J. Proteome Res. 2011, 10 (2) 896-906
-
(2011)
J. Proteome Res.
, vol.10
, Issue.2
, pp. 896-906
-
-
Nirmalan, N.J.1
Hughes, C.2
Peng, J.3
McKenna, T.4
Langridge, J.5
Cairns, D.A.6
Harnden, P.7
Selby, P.J.8
Banks, R.E.9
-
32
-
-
77954378942
-
Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry
-
Ostasiewicz, P.; Zielinska, D. F.; Mann, M.; Wisniewski, J. R. Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry J. Proteome Res. 2010, 9 (7) 3688-3700
-
(2010)
J. Proteome Res.
, vol.9
, Issue.7
, pp. 3688-3700
-
-
Ostasiewicz, P.1
Zielinska, D.F.2
Mann, M.3
Wisniewski, J.R.4
-
33
-
-
75149180460
-
Unbiased quantitation of Escherichia coli membrane proteome using phase transfer surfactants
-
Masuda, T.; Saito, N.; Tomita, M.; Ishihama, Y. Unbiased quantitation of Escherichia coli membrane proteome using phase transfer surfactants Mol. Cell. Proteomics 2009, 8 (12) 2770-2777
-
(2009)
Mol. Cell. Proteomics
, vol.8
, Issue.12
, pp. 2770-2777
-
-
Masuda, T.1
Saito, N.2
Tomita, M.3
Ishihama, Y.4
-
34
-
-
39749125069
-
Phase transfer surfactant-aided trypsin digestion for membrane proteome analysis
-
Masuda, T.; Tomita, M.; Ishihama, Y. Phase transfer surfactant-aided trypsin digestion for membrane proteome analysis J. Proteome Res. 2008, 7 (2) 731-740
-
(2008)
J. Proteome Res.
, vol.7
, Issue.2
, pp. 731-740
-
-
Masuda, T.1
Tomita, M.2
Ishihama, Y.3
-
35
-
-
84885106989
-
Quantitative Assessment of In-solution Digestion Efficiency Identifies Optimal Protocols for Unbiased Protein Analysis
-
Leon, I. R.; Schwammle, V.; Jensen, O. N.; Sprenger, R. R. Quantitative Assessment of In-solution Digestion Efficiency Identifies Optimal Protocols for Unbiased Protein Analysis Mol. Cell. Proteomics 2013, 12 (10) 2992-3005
-
(2013)
Mol. Cell. Proteomics
, vol.12
, Issue.10
, pp. 2992-3005
-
-
Leon, I.R.1
Schwammle, V.2
Jensen, O.N.3
Sprenger, R.R.4
-
36
-
-
79960350722
-
Protein phosphorylation analysis in archival clinical cancer samples by shotgun and targeted proteomics approaches
-
Gamez-Pozo, A.; Sanchez-Navarro, I.; Calvo, E.; Diaz, E.; Miguel-Martin, M.; Lopez, R.; Agullo, T.; Camafeita, E.; Espinosa, E.; Lopez, J. A.; Nistal, M.; Vara, J. A. Protein phosphorylation analysis in archival clinical cancer samples by shotgun and targeted proteomics approaches Mol. Biosyst. 2011, 7 (8) 2368-2374
-
(2011)
Mol. Biosyst.
, vol.7
, Issue.8
, pp. 2368-2374
-
-
Gamez-Pozo, A.1
Sanchez-Navarro, I.2
Calvo, E.3
Diaz, E.4
Miguel-Martin, M.5
Lopez, R.6
Agullo, T.7
Camafeita, E.8
Espinosa, E.9
Lopez, J.A.10
Nistal, M.11
Vara, J.A.12
-
37
-
-
0242291099
-
Enzyme-friendly, mass spectrometry-compatible surfactant for in-solution enzymatic digestion of proteins
-
Yu, Y. Q.; Gilar, M.; Lee, P. J.; Bouvier, E. S.; Gebler, J. C. Enzyme-friendly, mass spectrometry-compatible surfactant for in-solution enzymatic digestion of proteins Anal. Chem. 2003, 75 (21) 6023-6028
-
(2003)
Anal. Chem.
, vol.75
, Issue.21
, pp. 6023-6028
-
-
Yu, Y.Q.1
Gilar, M.2
Lee, P.J.3
Bouvier, E.S.4
Gebler, J.C.5
-
38
-
-
0037317228
-
Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics
-
Rappsilber, J.; Ishihama, Y.; Mann, M. Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics Anal. Chem. 2003, 75 (3) 663-670
-
(2003)
Anal. Chem.
, vol.75
, Issue.3
, pp. 663-670
-
-
Rappsilber, J.1
Ishihama, Y.2
Mann, M.3
-
39
-
-
64749108158
-
Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
-
Boersema, P. J.; Raijmakers, R.; Lemeer, S.; Mohammed, S.; Heck, A. J. Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics Nat. Protoc. 2009, 4 (4) 484-494
-
(2009)
Nat. Protoc.
, vol.4
, Issue.4
, pp. 484-494
-
-
Boersema, P.J.1
Raijmakers, R.2
Lemeer, S.3
Mohammed, S.4
Heck, A.J.5
-
40
-
-
0348014635
-
Stable-isotope dimethyl labeling for quantitative proteomics
-
Hsu, J. L.; Huang, S. Y.; Chow, N. H.; Chen, S. H. Stable-isotope dimethyl labeling for quantitative proteomics Anal. Chem. 2003, 75 (24) 6843-6852
-
(2003)
Anal. Chem.
, vol.75
, Issue.24
, pp. 6843-6852
-
-
Hsu, J.L.1
Huang, S.Y.2
Chow, N.H.3
Chen, S.H.4
-
41
-
-
0037032628
-
Microcolumns with self-assembled particle frits for proteomics
-
Ishihama, Y.; Rappsilber, J.; Andersen, J. S.; Mann, M. Microcolumns with self-assembled particle frits for proteomics J. Chromatogr., A 2002, 979 (1-2) 233-239
-
(2002)
J. Chromatogr., A
, vol.979
, Issue.12
, pp. 233-239
-
-
Ishihama, Y.1
Rappsilber, J.2
Andersen, J.S.3
Mann, M.4
-
42
-
-
29244448703
-
Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap
-
Olsen, J. V.; de Godoy, L. M.; Li, G.; Macek, B.; Mortensen, P.; Pesch, R.; Makarov, A.; Lange, O.; Horning, S.; Mann, M. Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap Mol. Cell Proteomics 2005, 4 (12) 2010-2021
-
(2005)
Mol. Cell Proteomics
, vol.4
, Issue.12
, pp. 2010-2021
-
-
Olsen, J.V.1
De Godoy, L.M.2
Li, G.3
MacEk, B.4
Mortensen, P.5
Pesch, R.6
Makarov, A.7
Lange, O.8
Horning, S.9
Mann, M.10
-
43
-
-
66149091950
-
Improved electrospray ionization efficiency compensates for diminished chromatographic resolution and enables proteomics analysis of tyrosine signaling in embryonic stem cells
-
Ficarro, S. B.; Zhang, Y.; Lu, Y.; Moghimi, A. R.; Askenazi, M.; Hyatt, E.; Smith, E. D.; Boyer, L.; Schlaeger, T. M.; Luckey, C. J.; Marto, J. A. Improved electrospray ionization efficiency compensates for diminished chromatographic resolution and enables proteomics analysis of tyrosine signaling in embryonic stem cells Anal. Chem. 2009, 81 (9) 3440-3447
-
(2009)
Anal. Chem.
, vol.81
, Issue.9
, pp. 3440-3447
-
-
Ficarro, S.B.1
Zhang, Y.2
Lu, Y.3
Moghimi, A.R.4
Askenazi, M.5
Hyatt, E.6
Smith, E.D.7
Boyer, L.8
Schlaeger, T.M.9
Luckey, C.J.10
Marto, J.A.11
-
44
-
-
27144469969
-
Self-made frits for nanoscale columns in proteomics
-
Maiolica, A.; Borsotti, D.; Rappsilber, J. Self-made frits for nanoscale columns in proteomics Proteomics 2005, 5 (15) 3847-3850
-
(2005)
Proteomics
, vol.5
, Issue.15
, pp. 3847-3850
-
-
Maiolica, A.1
Borsotti, D.2
Rappsilber, J.3
-
45
-
-
80054711609
-
Microscale phosphoproteome analysis of 10,000 cells from human cancer cell lines
-
Masuda, T.; Sugiyama, N.; Tomita, M.; Ishihama, Y. Microscale phosphoproteome analysis of 10,000 cells from human cancer cell lines Anal. Chem. 2011, 83 (20) 7698-7703
-
(2011)
Anal. Chem.
, vol.83
, Issue.20
, pp. 7698-7703
-
-
Masuda, T.1
Sugiyama, N.2
Tomita, M.3
Ishihama, Y.4
-
46
-
-
3042815334
-
Trypsin cleaves exclusively C-terminal to arginine and lysine residues
-
Olsen, J. V.; Ong, S. E.; Mann, M. Trypsin cleaves exclusively C-terminal to arginine and lysine residues Mol. Cell. Proteomics 2004, 3 (6) 608-614
-
(2004)
Mol. Cell. Proteomics
, vol.3
, Issue.6
, pp. 608-614
-
-
Olsen, J.V.1
Ong, S.E.2
Mann, M.3
-
47
-
-
0028575316
-
Error-tolerant identification of peptides in sequence databases by peptide sequence tags
-
Mann, M.; Wilm, M. Error-tolerant identification of peptides in sequence databases by peptide sequence tags Anal. Chem. 1994, 66 (24) 4390-4399
-
(1994)
Anal. Chem.
, vol.66
, Issue.24
, pp. 4390-4399
-
-
Mann, M.1
Wilm, M.2
-
48
-
-
33749853607
-
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
-
Beausoleil, S. A.; Villen, J.; Gerber, S. A.; Rush, J.; Gygi, S. P. A probability-based approach for high-throughput protein phosphorylation analysis and site localization Nat. Biotechnol. 2006, 24 (10) 1285-1292
-
(2006)
Nat. Biotechnol.
, vol.24
, Issue.10
, pp. 1285-1292
-
-
Beausoleil, S.A.1
Villen, J.2
Gerber, S.A.3
Rush, J.4
Gygi, S.P.5
-
49
-
-
0025829609
-
Antigen retrieval in formalin-fixed, paraffin-embedded tissues: An enhancement method for immunohistochemical staining based on microwave oven heating of tissue sections
-
Shi, S. R.; Key, M. E.; Kalra, K. L. Antigen retrieval in formalin-fixed, paraffin-embedded tissues: an enhancement method for immunohistochemical staining based on microwave oven heating of tissue sections J. Histochem. Cytochem. 1991, 39 (6) 741-748
-
(1991)
J. Histochem. Cytochem.
, vol.39
, Issue.6
, pp. 741-748
-
-
Shi, S.R.1
Key, M.E.2
Kalra, K.L.3
-
50
-
-
78650814932
-
Antigen retrieval immunohistochemistry: Review and future prospects in research and diagnosis over two decades
-
Shi, S. R.; Shi, Y.; Taylor, C. R. Antigen retrieval immunohistochemistry: review and future prospects in research and diagnosis over two decades J. Histochem. Cytochem. 2011, 59 (1) 13-32
-
(2011)
J. Histochem. Cytochem.
, vol.59
, Issue.1
, pp. 13-32
-
-
Shi, S.R.1
Shi, Y.2
Taylor, C.R.3
-
51
-
-
33646698472
-
Protein extraction from formalin-fixed, paraffin-embedded tissue sections: Quality evaluation by mass spectrometry
-
Shi, S. R.; Liu, C.; Balgley, B. M.; Lee, C.; Taylor, C. R. Protein extraction from formalin-fixed, paraffin-embedded tissue sections: quality evaluation by mass spectrometry J. Histochem. Cytochem. 2006, 54 (6) 739-743
-
(2006)
J. Histochem. Cytochem.
, vol.54
, Issue.6
, pp. 739-743
-
-
Shi, S.R.1
Liu, C.2
Balgley, B.M.3
Lee, C.4
Taylor, C.R.5
-
52
-
-
71049141298
-
Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis
-
Sprung, R. W., Jr.; Brock, J. W.; Tanksley, J. P.; Li, M.; Washington, M. K.; Slebos, R. J.; Liebler, D. C. Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis Mol. Cell. Proteomics 2009, 8 (8) 1988-1998
-
(2009)
Mol. Cell. Proteomics
, vol.8
, Issue.8
, pp. 1988-1998
-
-
Sprung, Jr.R.W.1
Brock, J.W.2
Tanksley, J.P.3
Li, M.4
Washington, M.K.5
Slebos, R.J.6
Liebler, D.C.7
-
53
-
-
61849114172
-
Evaluation of archival time on shotgun proteomics of formalin-fixed and paraffin-embedded tissues
-
Balgley, B. M.; Guo, T.; Zhao, K.; Fang, X.; Tavassoli, F. A.; Lee, C. S. Evaluation of archival time on shotgun proteomics of formalin-fixed and paraffin-embedded tissues J. Proteome Res. 2009, 8 (2) 917-925
-
(2009)
J. Proteome Res.
, vol.8
, Issue.2
, pp. 917-925
-
-
Balgley, B.M.1
Guo, T.2
Zhao, K.3
Fang, X.4
Tavassoli, F.A.5
Lee, C.S.6
-
54
-
-
80054038843
-
Enhancing the identification of phosphopeptides from putative basophilic kinase substrates using Ti (IV) based IMAC enrichment
-
Zhou, H.; Low, T. Y.; Hennrich, M. L.; van der Toorn, H.; Schwend, T.; Zou, H.; Mohammed, S.; Heck, A. J. Enhancing the identification of phosphopeptides from putative basophilic kinase substrates using Ti (IV) based IMAC enrichment Mol. Cell. Proteomics 2011, 10 (10) M110.006452
-
(2011)
Mol. Cell. Proteomics
, vol.10
, Issue.10
, pp. 110006452
-
-
Zhou, H.1
Low, T.Y.2
Hennrich, M.L.3
Van Der Toorn, H.4
Schwend, T.5
Zou, H.6
Mohammed, S.7
Heck, A.J.8
-
55
-
-
84875208164
-
Robust phosphoproteome enrichment using monodisperse microsphere-based immobilized titanium (IV) ion affinity chromatography
-
Zhou, H.; Ye, M.; Dong, J.; Corradini, E.; Cristobal, A.; Heck, A. J.; Zou, H.; Mohammed, S. Robust phosphoproteome enrichment using monodisperse microsphere-based immobilized titanium (IV) ion affinity chromatography Nat. Protoc. 2013, 8 (3) 461-480
-
(2013)
Nat. Protoc.
, vol.8
, Issue.3
, pp. 461-480
-
-
Zhou, H.1
Ye, M.2
Dong, J.3
Corradini, E.4
Cristobal, A.5
Heck, A.J.6
Zou, H.7
Mohammed, S.8
-
56
-
-
80555134728
-
Online nanoflow multidimensional fractionation for high efficiency phosphopeptide analysis
-
Ficarro, S. B.; Zhang, Y.; Carrasco-Alfonso, M. J.; Garg, B.; Adelmant, G.; Webber, J. T.; Luckey, C. J.; Marto, J. A. Online nanoflow multidimensional fractionation for high efficiency phosphopeptide analysis Mol Cell Proteomics 2011, 10 (11) O111.011064
-
(2011)
Mol Cell Proteomics
, vol.10
, Issue.11
, pp. 111011064
-
-
Ficarro, S.B.1
Zhang, Y.2
Carrasco-Alfonso, M.J.3
Garg, B.4
Adelmant, G.5
Webber, J.T.6
Luckey, C.J.7
Marto, J.A.8
-
57
-
-
77953595441
-
Undesirable charge-enhancement of isobaric tagged phosphopeptides leads to reduced identification efficiency
-
Thingholm, T. E.; Palmisano, G.; Kjeldsen, F.; Larsen, M. R. Undesirable charge-enhancement of isobaric tagged phosphopeptides leads to reduced identification efficiency J. Proteome Res. 2010, 9 (8) 4045-4052
-
(2010)
J. Proteome Res.
, vol.9
, Issue.8
, pp. 4045-4052
-
-
Thingholm, T.E.1
Palmisano, G.2
Kjeldsen, F.3
Larsen, M.R.4
-
58
-
-
27644573915
-
Macrodissection versus microdissection of rectal carcinoma: Minor influence of stroma cells to tumor cell gene expression profiles
-
de Bruin, E. C.; van de Pas, S.; Lips, E. H.; van Eijk, R.; van der Zee, M. M.; Lombaerts, M.; van Wezel, T.; Marijnen, C. A.; van Krieken, J. H.; Medema, J. P.; van de Velde, C. J.; Eilers, P. H.; Peltenburg, L. T. Macrodissection versus microdissection of rectal carcinoma: minor influence of stroma cells to tumor cell gene expression profiles BMC Genomics 2005, 6, 142
-
(2005)
BMC Genomics
, vol.6
, pp. 142
-
-
De Bruin, E.C.1
Van De Pas, S.2
Lips, E.H.3
Van Eijk, R.4
Van Der Zee, M.M.5
Lombaerts, M.6
Van Wezel, T.7
Marijnen, C.A.8
Van Krieken, J.H.9
Medema, J.P.10
Van De Velde, C.J.11
Eilers, P.H.12
Peltenburg, L.T.13
-
59
-
-
64649085620
-
Application of laser microdissection and reverse-phase protein microarrays to the molecular profiling of cancer signal pathway networks in the tissue microenvironment
-
Espina, V.; Wulfkuhle, J.; Liotta, L. A. Application of laser microdissection and reverse-phase protein microarrays to the molecular profiling of cancer signal pathway networks in the tissue microenvironment Clin. Lab. Med. 2009, 29 (1) 1-13
-
(2009)
Clin. Lab. Med.
, vol.29
, Issue.1
, pp. 1-13
-
-
Espina, V.1
Wulfkuhle, J.2
Liotta, L.A.3
-
60
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte, J.; Doolittle, R. F. A simple method for displaying the hydropathic character of a protein J. Mol. Biol. 1982, 157 (1) 105-132
-
(1982)
J. Mol. Biol.
, vol.157
, Issue.1
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
|