-
1
-
-
0022112084
-
Formaldehyde fixation
-
10.1177/33.8.3894502 1:STN:280:DyaL2M3mt1Oiug%3D%3D
-
CH Fox FB Johnson J Whiting PP Roller 1985 Formaldehyde fixation J Histochem Cytochem 33 8 845 853 10.1177/33.8.3894502 1:STN:280: DyaL2M3mt1Oiug%3D%3D
-
(1985)
J Histochem Cytochem
, vol.33
, Issue.8
, pp. 845-853
-
-
Fox, C.H.1
Johnson, F.B.2
Whiting, J.3
Roller, P.P.4
-
2
-
-
79953072078
-
The use of formalin fixed wax embedded tissue for proteomic analysis
-
10.1136/jcp.2010.086835 1:CAS:528:DC%2BC3MXlvFGqt7Y%3D
-
LD Ralton GI Murray 2011 The use of formalin fixed wax embedded tissue for proteomic analysis J Clin Pathol 64 4 297 302 10.1136/jcp.2010.086835 1:CAS:528:DC%2BC3MXlvFGqt7Y%3D
-
(2011)
J Clin Pathol
, vol.64
, Issue.4
, pp. 297-302
-
-
Ralton, L.D.1
Murray, G.I.2
-
3
-
-
0023948705
-
Mapping protein-DNA interactions in vivo with formaldehyde: Evidence that histone H4 is retained on a highly transcribed gene
-
10.1016/S0092-8674(88)90469-2 1:CAS:528:DyaL1cXkvVOgsrk%3D
-
MJ Solomon PL Larsen A Varshavsky 1988 Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene Cell 53 6 937 947 10.1016/S0092-8674(88)90469-2 1:CAS:528:DyaL1cXkvVOgsrk%3D
-
(1988)
Cell
, vol.53
, Issue.6
, pp. 937-947
-
-
Solomon, M.J.1
Larsen, P.L.2
Varshavsky, A.3
-
4
-
-
79952113220
-
Mass spectrometry-based proteomics in biomedical research: Emerging technologies and future strategies
-
10.1017/S1462399410001614
-
GM Walsh JC Rogalski C Klockenbusch J Kast 2010 Mass spectrometry-based proteomics in biomedical research: emerging technologies and future strategies Expert Rev Mol Med 12 e30 10.1017/S1462399410001614
-
(2010)
Expert Rev Mol Med
, vol.12
, pp. 30
-
-
Walsh, G.M.1
Rogalski, J.C.2
Klockenbusch, C.3
Kast, J.4
-
5
-
-
34748916981
-
Quantitative mass spectrometry in proteomics: A critical review
-
10.1007/s00216-007-1486-6 1:CAS:528:DC%2BD2sXhtVyntbfF
-
M Bantscheff M Schirle G Sweetman J Rick B Kuster 2007 Quantitative mass spectrometry in proteomics: a critical review Anal Bioanal Chem 389 4 1017 1031 10.1007/s00216-007-1486-6 1:CAS:528:DC%2BD2sXhtVyntbfF
-
(2007)
Anal Bioanal Chem
, vol.389
, Issue.4
, pp. 1017-1031
-
-
Bantscheff, M.1
Schirle, M.2
Sweetman, G.3
Rick, J.4
Kuster, B.5
-
6
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
10.1074/mcp.M200025-MCP200 1:CAS:528:DC%2BD38XlslWhsrk%3D
-
SE Ong B Blagoev I Kratchmarova DB Kristensen H Steen A Pandey M Mann 2002 Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics Mol Cell Proteomics 1 5 376 386 10.1074/mcp.M200025-MCP200 1:CAS:528:DC%2BD38XlslWhsrk%3D
-
(2002)
Mol Cell Proteomics
, vol.1
, Issue.5
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
7
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
10.1074/mcp.M400129-MCP200 1:CAS:528:DC%2BD2MXhvFartg%3D%3D
-
PL Ross YN Huang JN Marchese B Williamson K Parker S Hattan N Khainovski S Pillai S Dey S Daniels S Purkayastha P Juhasz S Martin M Bartlet-Jones F He A Jacobson DJ Pappin 2004 Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents Mol Cell Proteomics 3 12 1154 1169 10.1074/mcp.M400129-MCP200 1:CAS:528:DC%2BD2MXhvFartg%3D%3D
-
(2004)
Mol Cell Proteomics
, vol.3
, Issue.12
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
Purkayastha, S.11
Juhasz, P.12
Martin, S.13
Bartlet-Jones, M.14
He, F.15
Jacobson, A.16
Pappin, D.J.17
-
8
-
-
12444345515
-
Tandem mass tags: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
-
10.1021/ac0262560 1:CAS:528:DC%2BD3sXhslSmtbw%3D
-
A Thompson J Schafer K Kuhn S Kienle J Schwarz G Schmidt T Neumann R Johnstone AK Mohammed C Hamon 2003 Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS Anal Chem 75 8 1895 1904 10.1021/ac0262560 1:CAS:528:DC%2BD3sXhslSmtbw%3D
-
(2003)
Anal Chem
, vol.75
, Issue.8
, pp. 1895-1904
-
-
Thompson, A.1
Schafer, J.2
Kuhn, K.3
Kienle, S.4
Schwarz, J.5
Schmidt, G.6
Neumann, T.7
Johnstone, R.8
Mohammed, A.K.9
Hamon, C.10
-
9
-
-
79551500036
-
Less label, more free: Approaches in label-free quantitative mass spectrometry
-
10.1002/pmic.201000553 1:CAS:528:DC%2BC3MXhsVSnu74%3D
-
KA Neilson NA Ali S Muralidharan M Mirzaei M Mariani G Assadourian A Lee SC van Sluyter PA Haynes 2011 Less label, more free: approaches in label-free quantitative mass spectrometry Proteomics 11 4 535 553 10.1002/pmic.201000553 1:CAS:528:DC%2BC3MXhsVSnu74%3D
-
(2011)
Proteomics
, vol.11
, Issue.4
, pp. 535-553
-
-
Neilson, K.A.1
Ali, N.A.2
Muralidharan, S.3
Mirzaei, M.4
Mariani, M.5
Assadourian, G.6
Lee, A.7
Van Sluyter, S.C.8
Haynes, P.A.9
-
10
-
-
46849099222
-
Utility of formaldehyde cross-linking and mass spectrometry in the study of protein-protein interactions
-
10.1002/jms.1415 1:CAS:528:DC%2BD1cXnvFCmu7g%3D
-
BW Sutherland J Toews J Kast 2008 Utility of formaldehyde cross-linking and mass spectrometry in the study of protein-protein interactions J Mass Spectrom 43 6 699 715 10.1002/jms.1415 1:CAS:528:DC%2BD1cXnvFCmu7g%3D
-
(2008)
J Mass Spectrom
, vol.43
, Issue.6
, pp. 699-715
-
-
Sutherland, B.W.1
Toews, J.2
Kast, J.3
-
11
-
-
33646908503
-
Identification of formaldehyde-induced modifications in proteins: Reactions with insulin
-
10.1021/bc050340f 1:CAS:528:DC%2BD28XjvVKjs7g%3D
-
B Metz GF Kersten GJ Baart A de Jong H Meiring J ten Hove MJ van Steenbergen WE Hennink DJ Crommelin W Jiskoot 2006 Identification of formaldehyde-induced modifications in proteins: reactions with insulin Bioconj Chem 17 3 815 822 10.1021/bc050340f 1:CAS:528:DC%2BD28XjvVKjs7g%3D
-
(2006)
Bioconj Chem
, vol.17
, Issue.3
, pp. 815-822
-
-
Metz, B.1
Kersten, G.F.2
Baart, G.J.3
De Jong, A.4
Meiring, H.5
Ten Hove, J.6
Van Steenbergen, M.J.7
Hennink, W.E.8
Crommelin, D.J.9
Jiskoot, W.10
-
12
-
-
10744223820
-
Identification of formaldehyde-induced modifications in proteins: Reactions with model peptides
-
10.1074/jbc.M310752200 1:CAS:528:DC%2BD2cXht1ClsL8%3D
-
B Metz GF Kersten P Hoogerhout HF Brugghe HA Timmermans A de Jong H Meiring J ten Hove WE Hennink DJ Crommelin W Jiskoot 2004 Identification of formaldehyde-induced modifications in proteins: reactions with model peptides J Biol Chem 279 8 6235 6243 10.1074/jbc.M310752200 1:CAS:528:DC%2BD2cXht1ClsL8%3D
-
(2004)
J Biol Chem
, vol.279
, Issue.8
, pp. 6235-6243
-
-
Metz, B.1
Kersten, G.F.2
Hoogerhout, P.3
Brugghe, H.F.4
Timmermans, H.A.5
De Jong, A.6
Meiring, H.7
Ten Hove, J.8
Hennink, W.E.9
Crommelin, D.J.10
Jiskoot, W.11
-
13
-
-
44149119998
-
Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions
-
10.1016/j.aca.2008.04.049 1:CAS:528:DC%2BD1cXms1yjur0%3D
-
J Toews JC Rogalski TJ Clark J Kast 2008 Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions Anal Chim Acta 618 2 168 183 10.1016/j.aca.2008.04.049 1:CAS:528:DC%2BD1cXms1yjur0%3D
-
(2008)
Anal Chim Acta
, vol.618
, Issue.2
, pp. 168-183
-
-
Toews, J.1
Rogalski, J.C.2
Clark, T.J.3
Kast, J.4
-
14
-
-
77956173802
-
Accessibility governs the relative reactivity of basic residues in formaldehyde-induced protein modifications
-
10.1016/j.aca.2010.07.040 1:CAS:528:DC%2BC3cXhtV2hu77J
-
J Toews JC Rogalski J Kast 2010 Accessibility governs the relative reactivity of basic residues in formaldehyde-induced protein modifications Anal Chim Acta 676 1-2 60 67 10.1016/j.aca.2010.07.040 1:CAS:528:DC%2BC3cXhtV2hu77J
-
(2010)
Anal Chim Acta
, vol.676
, Issue.12
, pp. 60-67
-
-
Toews, J.1
Rogalski, J.C.2
Kast, J.3
-
15
-
-
64749108158
-
Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
-
10.1038/nprot.2009.21 1:CAS:528:DC%2BD1MXjvFyjs7g%3D
-
PJ Boersema R Raijmakers S Lemeer S Mohammed AJ Heck 2009 Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics Nat Protoc 4 4 484 494 10.1038/nprot.2009.21 1:CAS:528:DC%2BD1MXjvFyjs7g%3D
-
(2009)
Nat Protoc
, vol.4
, Issue.4
, pp. 484-494
-
-
Boersema, P.J.1
Raijmakers, R.2
Lemeer, S.3
Mohammed, S.4
Heck, A.J.5
-
16
-
-
77954378942
-
Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry
-
10.1021/pr100234w 1:CAS:528:DC%2BC3cXmsFSnsrk%3D
-
P Ostasiewicz DF Zielinska M Mann JR Wisniewski 2010 Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry J Proteome Res 9 7 3688 3700 10.1021/pr100234w 1:CAS:528: DC%2BC3cXmsFSnsrk%3D
-
(2010)
J Proteome Res
, vol.9
, Issue.7
, pp. 3688-3700
-
-
Ostasiewicz, P.1
Zielinska, D.F.2
Mann, M.3
Wisniewski, J.R.4
-
18
-
-
0029791705
-
A strategy for identifying gel-separated proteins in sequence databases by MS alone
-
1:CAS:528:DyaK28XlslSns78%3D
-
A Shevchenko M Wilm O Vorm ON Jensen AV Podtelejnikov G Neubauer P Mortensen M Mann 1996 A strategy for identifying gel-separated proteins in sequence databases by MS alone Biochem Soc Trans 24 3 893 896 1:CAS:528:DyaK28XlslSns78%3D
-
(1996)
Biochem Soc Trans
, vol.24
, Issue.3
, pp. 893-896
-
-
Shevchenko, A.1
Wilm, M.2
Vorm, O.3
Jensen, O.N.4
Podtelejnikov, A.V.5
Neubauer, G.6
Mortensen, P.7
Mann, M.8
-
19
-
-
12344310514
-
Reversing the effects of formalin fixation with citraconic anhydride and heat: A universal antigen retrieval method
-
1:CAS:528:DC%2BD2MXot12hug%3D%3D
-
S Namimatsu M Ghazizadeh Y Sugisaki 2005 Reversing the effects of formalin fixation with citraconic anhydride and heat: a universal antigen retrieval method J Histochem Cytochem 53 1 3 11 1:CAS:528:DC%2BD2MXot12hug%3D%3D
-
(2005)
J Histochem Cytochem
, vol.53
, Issue.1
, pp. 3-11
-
-
Namimatsu, S.1
Ghazizadeh, M.2
Sugisaki, Y.3
-
21
-
-
0030884713
-
Emerging tandem-mass-spectrometry techniques for the rapid identification of proteins
-
10.1016/S0167-7799(97)01110-4 1:CAS:528:DyaK2sXmslCksLw%3D
-
AR Dongre JK Eng JR Yates 3rd 1997 Emerging tandem-mass-spectrometry techniques for the rapid identification of proteins Trends Biotechnol 15 10 418 425 10.1016/S0167-7799(97)01110-4 1:CAS:528:DyaK2sXmslCksLw%3D
-
(1997)
Trends Biotechnol
, vol.15
, Issue.10
, pp. 418-425
-
-
Dongre, A.R.1
Eng, J.K.2
Yates III, J.R.3
-
22
-
-
77956108790
-
MTRAQ-based quantification of potential endometrial carcinoma biomarkers from archived formalin-fixed paraffin-embedded tissues
-
10.1002/pmic.201000082 1:CAS:528:DC%2BC3cXhtV2gsb3E
-
LV DeSouza O Krakovska MM Darfler DB Krizman AD Romaschin TJ Colgan KW Siu 2010 mTRAQ-based quantification of potential endometrial carcinoma biomarkers from archived formalin-fixed paraffin-embedded tissues Proteomics 10 17 3108 3116 10.1002/pmic.201000082 1:CAS:528:DC%2BC3cXhtV2gsb3E
-
(2010)
Proteomics
, vol.10
, Issue.17
, pp. 3108-3116
-
-
Desouza, L.V.1
Krakovska, O.2
Darfler, M.M.3
Krizman, D.B.4
Romaschin, A.D.5
Colgan, T.J.6
Siu, K.W.7
-
23
-
-
84856407461
-
Peptide extraction from formalin-fixed paraffin-embedded tissue
-
Chapter 23:Unit23 25
-
Heaton KJ, Master SR (2011) Peptide extraction from formalin-fixed paraffin-embedded tissue. Curr Protoc Protein Sci Chapter 23:Unit23 25
-
(2011)
Curr Protoc Protein Sci
-
-
Heaton, K.J.1
Master, S.R.2
-
24
-
-
67349266694
-
Universal sample preparation method for proteome analysis
-
10.1038/nmeth.1322 1:CAS:528:DC%2BD1MXks12ksb0%3D
-
JR Wisniewski A Zougman N Nagaraj M Mann 2009 Universal sample preparation method for proteome analysis Nat Methods 6 5 359 362 10.1038/nmeth.1322 1:CAS:528:DC%2BD1MXks12ksb0%3D
-
(2009)
Nat Methods
, vol.6
, Issue.5
, pp. 359-362
-
-
Wisniewski, J.R.1
Zougman, A.2
Nagaraj, N.3
Mann, M.4
-
25
-
-
33846629961
-
Quantitative protein analysis from formalin-fixed tissues: Implications for translational clinical research and nanoscale molecular diagnosis
-
10.1002/path.2107 1:CAS:528:DC%2BD2sXisFyksb4%3D
-
KF Becker C Schott S Hipp V Metzger P Porschewski R Beck J Nahrig I Becker H Hofler 2007 Quantitative protein analysis from formalin-fixed tissues: implications for translational clinical research and nanoscale molecular diagnosis J Pathol 211 3 370 378 10.1002/path.2107 1:CAS:528: DC%2BD2sXisFyksb4%3D
-
(2007)
J Pathol
, vol.211
, Issue.3
, pp. 370-378
-
-
Becker, K.F.1
Schott, C.2
Hipp, S.3
Metzger, V.4
Porschewski, P.5
Beck, R.6
Nahrig, J.7
Becker, I.8
Hofler, H.9
-
26
-
-
79955448303
-
Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker investigations
-
10.1021/pr100812d 1:CAS:528:DC%2BC3cXhs1SrsbzM
-
NJ Nirmalan C Hughes J Peng T McKenna J Langridge DA Cairns P Harnden PJ Selby RE Banks 2011 Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker investigations J Proteome Res 10 2 896 906 10.1021/pr100812d 1:CAS:528:DC%2BC3cXhs1SrsbzM
-
(2011)
J Proteome Res
, vol.10
, Issue.2
, pp. 896-906
-
-
Nirmalan, N.J.1
Hughes, C.2
Peng, J.3
McKenna, T.4
Langridge, J.5
Cairns, D.A.6
Harnden, P.7
Selby, P.J.8
Banks, R.E.9
-
27
-
-
27144511949
-
Liquid Tissue: Proteomic profiling of formalin-fixed tissues
-
Prieto DA, Hood BL, Darfler MM, Guiel TG, Lucas DA, Conrads TP, Veenstra TD, Krizman DB (2005) Liquid Tissue: proteomic profiling of formalin-fixed tissues. Biotechniques Suppl:32-35
-
(2005)
Biotechniques
, Issue.SUPPL.
, pp. 32-35
-
-
Prieto, D.A.1
Hood, B.L.2
Darfler, M.M.3
Guiel, T.G.4
Lucas, D.A.5
Conrads, T.P.6
Veenstra, T.D.7
Krizman, D.B.8
-
28
-
-
75349102311
-
Quantitative proteomic analysis of formalin fixed paraffin embedded oral HPV lesions from HIV patients
-
10.2174/1875039700801010040 1:CAS:528:DC%2BD1cXlslegu7g%3D
-
MR Jain T Liu J Hu M Darfler V Fitzhugh J Rinaggio H Li 2008 Quantitative proteomic analysis of formalin fixed paraffin embedded oral HPV lesions from HIV patients Open Proteomics J 1 40 45 10.2174/1875039700801010040 1:CAS:528:DC%2BD1cXlslegu7g%3D
-
(2008)
Open Proteomics J
, vol.1
, pp. 40-45
-
-
Jain, M.R.1
Liu, T.2
Hu, J.3
Darfler, M.4
Fitzhugh, V.5
Rinaggio, J.6
Li, H.7
-
29
-
-
77952764025
-
Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry
-
10.1369/jhc.2010.955526 1:CAS:528:DC%2BC3cXms1Sjs70%3D
-
Z Xiao G Li Y Chen M Li F Peng C Li F Li Y Yu Y Ouyang Z Chen 2010 Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry J Histochem Cytochem 58 6 517 527 10.1369/jhc.2010.955526 1:CAS:528:DC%2BC3cXms1Sjs70%3D
-
(2010)
J Histochem Cytochem
, vol.58
, Issue.6
, pp. 517-527
-
-
Xiao, Z.1
Li, G.2
Chen, Y.3
Li, M.4
Peng, F.5
Li, C.6
Li, F.7
Yu, Y.8
Ouyang, Y.9
Chen, Z.10
-
30
-
-
79952392534
-
Differential proteomic analysis of late-stage and recurrent breast cancer from formalin-fixed paraffin-embedded tissues
-
10.1021/pr101073s 1:CAS:528:DC%2BC3MXnvVSlsw%3D%3D
-
NW Bateman M Sun R Bhargava BL Hood MM Darfler AJ Kovatich JA Hooke DB Krizman TP Conrads 2011 Differential proteomic analysis of late-stage and recurrent breast cancer from formalin-fixed paraffin-embedded tissues J Proteome Res 10 3 1323 1332 10.1021/pr101073s 1:CAS:528:DC%2BC3MXnvVSlsw%3D%3D
-
(2011)
J Proteome Res
, vol.10
, Issue.3
, pp. 1323-1332
-
-
Bateman, N.W.1
Sun, M.2
Bhargava, R.3
Hood, B.L.4
Darfler, M.M.5
Kovatich, A.J.6
Hooke, J.A.7
Krizman, D.B.8
Conrads, T.P.9
-
31
-
-
77954834510
-
The current state of chromatin immunoprecipitation
-
10.1007/s12033-009-9239-8 1:CAS:528:DC%2BC3cXktVWqtLc%3D
-
P Collas 2010 The current state of chromatin immunoprecipitation Mol Biotechnol 45 1 87 100 10.1007/s12033-009-9239-8 1:CAS:528:DC%2BC3cXktVWqtLc%3D
-
(2010)
Mol Biotechnol
, vol.45
, Issue.1
, pp. 87-100
-
-
Collas, P.1
-
32
-
-
17644392168
-
Multiple and simultaneous detection of specific bacteria in enriched bacterial communities using a DNA microarray chip with randomly generated genomic DNA probes
-
10.1021/ac048703c 1:CAS:528:DC%2BD2MXit1ahurg%3D
-
BC Kim JH Park MB Gu 2005 Multiple and simultaneous detection of specific bacteria in enriched bacterial communities using a DNA microarray chip with randomly generated genomic DNA probes Anal Chem 77 8 2311 2317 10.1021/ac048703c 1:CAS:528:DC%2BD2MXit1ahurg%3D
-
(2005)
Anal Chem
, vol.77
, Issue.8
, pp. 2311-2317
-
-
Kim, B.C.1
Park, J.H.2
Gu, M.B.3
-
33
-
-
33750442923
-
Genome-wide analysis of estrogen receptor binding sites
-
10.1038/ng1901 1:CAS:528:DC%2BD28XhtFeisbjI
-
JS Carroll CA Meyer J Song W Li TR Geistlinger J Eeckhoute AS Brodsky EK Keeton KC Fertuck GF Hall Q Wang S Bekiranov V Sementchenko EA Fox PA Silver TR Gingeras XS Liu M Brown 2006 Genome-wide analysis of estrogen receptor binding sites Nat Genet 38 11 1289 1297 10.1038/ng1901 1:CAS:528:DC%2BD28XhtFeisbjI
-
(2006)
Nat Genet
, vol.38
, Issue.11
, pp. 1289-1297
-
-
Carroll, J.S.1
Meyer, C.A.2
Song, J.3
Li, W.4
Geistlinger, T.R.5
Eeckhoute, J.6
Brodsky, A.S.7
Keeton, E.K.8
Fertuck, K.C.9
Hall, G.F.10
Wang, Q.11
Bekiranov, S.12
Sementchenko, V.13
Fox, E.A.14
Silver, P.A.15
Gingeras, T.R.16
Liu, X.S.17
Brown, M.18
-
34
-
-
50849090969
-
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data
-
10.1038/nmeth.1246 1:CAS:528:DC%2BD1cXhtVGgsb3F
-
A Valouev DS Johnson A Sundquist C Medina E Anton S Batzoglou RM Myers A Sidow 2008 Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data Nat Methods 5 9 829 834 10.1038/nmeth.1246 1:CAS:528: DC%2BD1cXhtVGgsb3F
-
(2008)
Nat Methods
, vol.5
, Issue.9
, pp. 829-834
-
-
Valouev, A.1
Johnson, D.S.2
Sundquist, A.3
Medina, C.4
Anton, E.5
Batzoglou, S.6
Myers, R.M.7
Sidow, A.8
-
35
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
10.1126/science.1141319 1:CAS:528:DC%2BD2sXmtFSjtrg%3D
-
DS Johnson A Mortazavi RM Myers B Wold 2007 Genome-wide mapping of in vivo protein-DNA interactions Science 316 5830 1497 1502 10.1126/science.1141319 1:CAS:528:DC%2BD2sXmtFSjtrg%3D
-
(2007)
Science
, vol.316
, Issue.5830
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
36
-
-
34548231009
-
Co-immunoprecipitations revisited: An update on experimental concepts and their implementation for sensitive interactome investigations of endogenous proteins
-
10.1007/s00216-007-1385-x 1:CAS:528:DC%2BD2sXpsFSjt7g%3D
-
K Markham Y Bai G Schmitt-Ulms 2007 Co-immunoprecipitations revisited: an update on experimental concepts and their implementation for sensitive interactome investigations of endogenous proteins Anal Bioanal Chem 389 2 461 473 10.1007/s00216-007-1385-x 1:CAS:528:DC%2BD2sXpsFSjt7g%3D
-
(2007)
Anal Bioanal Chem
, vol.389
, Issue.2
, pp. 461-473
-
-
Markham, K.1
Bai, Y.2
Schmitt-Ulms, G.3
-
37
-
-
77956058146
-
Investigation of protein-protein interactions in living cells by chemical crosslinking and mass spectrometry
-
10.1007/s00216-009-3405-5 1:CAS:528:DC%2BC3cXmt1eiug%3D%3D
-
A Sinz 2010 Investigation of protein-protein interactions in living cells by chemical crosslinking and mass spectrometry Anal Bioanal Chem 397 8 3433 3440 10.1007/s00216-009-3405-5 1:CAS:528:DC%2BC3cXmt1eiug%3D%3D
-
(2010)
Anal Bioanal Chem
, vol.397
, Issue.8
, pp. 3433-3440
-
-
Sinz, A.1
-
38
-
-
0017075525
-
Chemical probes of extended biological structures: Synthesis and properties of the cleavable protein cross-linking reagent [35S] dithiobis(succinimidyl propionate)
-
10.1016/0022-2836(76)90011-5 1:CAS:528:DyaE28XksF2isbs%3D
-
AJ Lomant G Fairbanks 1976 Chemical probes of extended biological structures: synthesis and properties of the cleavable protein cross-linking reagent [35S]dithiobis(succinimidyl propionate) J Mol Biol 104 1 243 261 10.1016/0022-2836(76)90011-5 1:CAS:528:DyaE28XksF2isbs%3D
-
(1976)
J Mol Biol
, vol.104
, Issue.1
, pp. 243-261
-
-
Lomant, A.J.1
Fairbanks, G.2
-
39
-
-
10644254712
-
Identification of protein-protein interactions using in vivo cross-linking and mass spectrometry
-
10.1002/pmic.200400856 1:CAS:528:DC%2BD2cXhtFarsb7N
-
J Vasilescu X Guo J Kast 2004 Identification of protein-protein interactions using in vivo cross-linking and mass spectrometry Proteomics 4 12 3845 3854 10.1002/pmic.200400856 1:CAS:528:DC%2BD2cXhtFarsb7N
-
(2004)
Proteomics
, vol.4
, Issue.12
, pp. 3845-3854
-
-
Vasilescu, J.1
Guo, X.2
Kast, J.3
-
40
-
-
77955394572
-
Optimization of formaldehyde cross-linking for protein interaction analysis of non-tagged integrin beta1
-
10.1155/2010/927585
-
C Klockenbusch J Kast 2010 Optimization of formaldehyde cross-linking for protein interaction analysis of non-tagged integrin beta1 J Biomed Biotechnol 2010 927585 10.1155/2010/927585
-
(2010)
J Biomed Biotechnol
, vol.2010
, pp. 927585
-
-
Klockenbusch, C.1
Kast, J.2
-
41
-
-
73349140865
-
Interactome analyses identify ties of PrP and its mammalian paralogs to oligomannosidic N-glycans and endoplasmic reticulum-derived chaperones
-
10.1371/journal.ppat.1000608
-
JC Watts H Huo Y Bai S Ehsani AH Jeon T Shi N Daude A Lau R Young L Xu GA Carlson D Williams D Westaway G Schmitt-Ulms 2009 Interactome analyses identify ties of PrP and its mammalian paralogs to oligomannosidic N-glycans and endoplasmic reticulum-derived chaperones PLoS Pathog 5 10 e1000608 10.1371/journal.ppat.1000608
-
(2009)
PLoS Pathog
, vol.5
, Issue.10
, pp. 1000608
-
-
Watts, J.C.1
Huo, H.2
Bai, Y.3
Ehsani, S.4
Jeon, A.H.5
Shi, T.6
Daude, N.7
Lau, A.8
Young, R.9
Xu, L.10
Carlson, G.A.11
Williams, D.12
Westaway, D.13
Schmitt-Ulms, G.14
-
42
-
-
82355165051
-
Time-controlled transcardiac perfusion crosslinking for in vivo interactome studies
-
10.1007/978-1-61779-364-6-16
-
AH Jeon G Schmitt-Ulms 2012 Time-controlled transcardiac perfusion crosslinking for in vivo interactome studies Methods Mol Biol 803 231 246 10.1007/978-1-61779-364-6-16
-
(2012)
Methods Mol Biol
, vol.803
, pp. 231-246
-
-
Jeon, A.H.1
Schmitt-Ulms, G.2
-
43
-
-
77953167152
-
Revealing novel telomere proteins using in vivo cross-linking, tandem affinity purification, and label-free quantitative LC-FTICR-MS
-
10.1074/mcp.M900490-MCP200 1:CAS:528:DC%2BC3cXpsFCrtL4%3D
-
T Nittis L Guittat RD LeDuc B Dao JP Duxin H Rohrs RR Townsend SA Stewart 2010 Revealing novel telomere proteins using in vivo cross-linking, tandem affinity purification, and label-free quantitative LC-FTICR-MS Mol Cell Proteomics 9 6 1144 1156 10.1074/mcp.M900490-MCP200 1:CAS:528: DC%2BC3cXpsFCrtL4%3D
-
(2010)
Mol Cell Proteomics
, vol.9
, Issue.6
, pp. 1144-1156
-
-
Nittis, T.1
Guittat, L.2
Leduc, R.D.3
Dao, B.4
Duxin, J.P.5
Rohrs, H.6
Townsend, R.R.7
Stewart, S.A.8
-
44
-
-
26844556166
-
I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions
-
10.1021/pr050225e 1:CAS:528:DC%2BD2MXovFWhsbY%3D
-
AJ Tackett JA DeGrasse MD Sekedat M Oeffinger MP Rout BT Chait 2005 I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions J Proteome Res 4 5 1752 1756 10.1021/pr050225e 1:CAS:528:DC%2BD2MXovFWhsbY%3D
-
(2005)
J Proteome Res
, vol.4
, Issue.5
, pp. 1752-1756
-
-
Tackett, A.J.1
Degrasse, J.A.2
Sekedat, M.D.3
Oeffinger, M.4
Rout, M.P.5
Chait, B.T.6
-
45
-
-
33644670152
-
An integrated mass spectrometry-based proteomic approach: Quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26S proteasome-interacting network
-
1:CAS:528:DC%2BD28XitVagsbo%3D
-
C Guerrero C Tagwerker P Kaiser L Huang 2006 An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26S proteasome-interacting network Mol Cell Proteomics 5 2 366 378 1:CAS:528:DC%2BD28XitVagsbo%3D
-
(2006)
Mol Cell Proteomics
, vol.5
, Issue.2
, pp. 366-378
-
-
Guerrero, C.1
Tagwerker, C.2
Kaiser, P.3
Huang, L.4
-
46
-
-
0031791530
-
Interactions in the TonB-dependent energy transduction complex: ExbB and ExbD form homomultimers
-
1:CAS:528:DyaK1cXntlers7k%3D
-
PI Higgs PS Myers K Postle 1998 Interactions in the TonB-dependent energy transduction complex: ExbB and ExbD form homomultimers J Bacteriol 180 22 6031 6038 1:CAS:528:DyaK1cXntlers7k%3D
-
(1998)
J Bacteriol
, vol.180
, Issue.22
, pp. 6031-6038
-
-
Higgs, P.I.1
Myers, P.S.2
Postle, K.3
-
47
-
-
0027282061
-
Energy transduction between membranes. TonB, a cytoplasmic membrane protein, can be chemically cross-linked in vivo to the outer membrane receptor FepA
-
1:CAS:528:DyaK3sXlsFGrtbw%3D
-
JT Skare BM Ahmer CL Seachord RP Darveau K Postle 1993 Energy transduction between membranes. TonB, a cytoplasmic membrane protein, can be chemically cross-linked in vivo to the outer membrane receptor FepA J Biol Chem 268 22 16302 16308 1:CAS:528:DyaK3sXlsFGrtbw%3D
-
(1993)
J Biol Chem
, vol.268
, Issue.22
, pp. 16302-16308
-
-
Skare, J.T.1
Ahmer, B.M.2
Seachord, C.L.3
Darveau, R.P.4
Postle, K.5
-
48
-
-
0030911410
-
Regions of Escherichia coli TonB and FepA proteins essential for in vivo physical interactions
-
1:CAS:528:DyaK2sXjtFKhsbY%3D
-
RA Larsen D Foster-Hartnett MA McIntosh K Postle 1997 Regions of Escherichia coli TonB and FepA proteins essential for in vivo physical interactions J Bacteriol 179 10 3213 3221 1:CAS:528:DyaK2sXjtFKhsbY%3D
-
(1997)
J Bacteriol
, vol.179
, Issue.10
, pp. 3213-3221
-
-
Larsen, R.A.1
Foster-Hartnett, D.2
McIntosh, M.A.3
Postle, K.4
-
49
-
-
0034099903
-
Proteins complexed to the P1 adhesin of Mycoplasma pneumoniae
-
1:CAS:528:DC%2BD3cXitVans7k%3D
-
G Layh-Schmitt A Podtelejnikov M Mann 2000 Proteins complexed to the P1 adhesin of Mycoplasma pneumoniae Microbiology 146 Pt 3 741 747 1:CAS:528:DC%2BD3cXitVans7k%3D
-
(2000)
Microbiology
, vol.146
, Issue.PART 3
, pp. 741-747
-
-
Layh-Schmitt, G.1
Podtelejnikov, A.2
Mann, M.3
-
50
-
-
80053896620
-
Choice of biological source material supersedes oxidative stress in its influence on DJ-1 in vivo interactions with Hsp90
-
10.1021/pr200225c 1:CAS:528:DC%2BC3MXhtVOktr3J
-
CB Knobbe TJ Revett Y Bai V Chow AH Jeon C Bohm S Ehsani T Kislinger HT Mount TW Mak P St George-Hyslop G Schmitt-Ulms 2011 Choice of biological source material supersedes oxidative stress in its influence on DJ-1 in vivo interactions with Hsp90 J Proteome Res 10 10 4388 4404 10.1021/pr200225c 1:CAS:528:DC%2BC3MXhtVOktr3J
-
(2011)
J Proteome Res
, vol.10
, Issue.10
, pp. 4388-4404
-
-
Knobbe, C.B.1
Revett, T.J.2
Bai, Y.3
Chow, V.4
Jeon, A.H.5
Bohm, C.6
Ehsani, S.7
Kislinger, T.8
Mount, H.T.9
Mak, T.W.10
St George-Hyslop, P.11
Schmitt-Ulms, G.12
-
51
-
-
77955817279
-
Proteomic identification of sorting nexin 6 as a negative regulator of BACE1-mediated APP processing
-
10.1096/fj.09-146357 1:CAS:528:DC%2BC3cXhtVeisbfJ
-
H Okada W Zhang C Peterhoff JC Hwang RA Nixon SH Ryu TW Kim 2010 Proteomic identification of sorting nexin 6 as a negative regulator of BACE1-mediated APP processing FASEB J 24 8 2783 2794 10.1096/fj.09-146357 1:CAS:528:DC%2BC3cXhtVeisbfJ
-
(2010)
FASEB J
, vol.24
, Issue.8
, pp. 2783-2794
-
-
Okada, H.1
Zhang, W.2
Peterhoff, C.3
Hwang, J.C.4
Nixon, R.A.5
Ryu, S.H.6
Kim, T.W.7
-
52
-
-
67449088488
-
Affinity purification strategy to capture human endogenous proteasome complexes diversity and to identify proteasome-interacting proteins
-
10.1074/mcp.M800193-MCP200 1:CAS:528:DC%2BD1MXmtlGqur4%3D
-
MP Bousquet-Dubouch E Baudelet F Guerin M Matondo S Uttenweiler-Joseph O Burlet-Schiltz B Monsarrat 2009 Affinity purification strategy to capture human endogenous proteasome complexes diversity and to identify proteasome-interacting proteins Mol Cell Proteomics 8 5 1150 1164 10.1074/mcp.M800193-MCP200 1:CAS:528:DC%2BD1MXmtlGqur4%3D
-
(2009)
Mol Cell Proteomics
, vol.8
, Issue.5
, pp. 1150-1164
-
-
Bousquet-Dubouch, M.P.1
Baudelet, E.2
Guerin, F.3
Matondo, M.4
Uttenweiler-Joseph, S.5
Burlet-Schiltz, O.6
Monsarrat, B.7
-
53
-
-
82555186441
-
Bioinformatics tools for the structural elucidation of multi-subunit protein complexes by mass spectrometric analysis of protein-protein cross-links
-
10.1093/bib/bbq087 1:CAS:528:DC%2BC3MXhsFant7bL
-
SL Mayne HG Patterton 2011 Bioinformatics tools for the structural elucidation of multi-subunit protein complexes by mass spectrometric analysis of protein-protein cross-links Brief Bioinform 12 6 660 671 10.1093/bib/bbq087 1:CAS:528:DC%2BC3MXhsFant7bL
-
(2011)
Brief Bioinform
, vol.12
, Issue.6
, pp. 660-671
-
-
Mayne, S.L.1
Patterton, H.G.2
-
54
-
-
77952027769
-
XComb: A cross-linked peptide database approach to protein-protein interaction analysis
-
10.1021/pr9011816 1:CAS:528:DC%2BC3cXkvVKrurk%3D
-
A Panchaud P Singh SA Shaffer DR Goodlett 2010 xComb: a cross-linked peptide database approach to protein-protein interaction analysis J Proteome Res 9 5 2508 2515 10.1021/pr9011816 1:CAS:528:DC%2BC3cXkvVKrurk%3D
-
(2010)
J Proteome Res
, vol.9
, Issue.5
, pp. 2508-2515
-
-
Panchaud, A.1
Singh, P.2
Shaffer, S.A.3
Goodlett, D.R.4
-
55
-
-
79952430498
-
Xlink-identifier: An automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry
-
10.1021/pr100848a 1:CAS:528:DC%2BC3MXhvFGqtro%3D
-
X Du SM Chowdhury NP Manes S Wu MU Mayer JN Adkins GA Anderson RD Smith 2011 Xlink-identifier: an automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry J Proteome Res 10 3 923 931 10.1021/pr100848a 1:CAS:528: DC%2BC3MXhvFGqtro%3D
-
(2011)
J Proteome Res
, vol.10
, Issue.3
, pp. 923-931
-
-
Du, X.1
Chowdhury, S.M.2
Manes, N.P.3
Wu, S.4
Mayer, M.U.5
Adkins, J.N.6
Anderson, G.A.7
Smith, R.D.8
-
56
-
-
79952118292
-
Protein identification by spectral networks analysis
-
10.1007/978-1-60761-977-2-11 1:CAS:528:DC%2BC3cXhs1WrsL%2FF
-
N Bandeira 2011 Protein identification by spectral networks analysis Methods Mol Biol 694 151 168 10.1007/978-1-60761-977-2-11 1:CAS:528: DC%2BC3cXhs1WrsL%2FF
-
(2011)
Methods Mol Biol
, vol.694
, pp. 151-168
-
-
Bandeira, N.1
-
57
-
-
80053020998
-
Isocratic method for affinity enrichment of covalently-linked peptides in cyanogen bromide cleavage of proteins
-
Shi T, Liu J, Yan C, Wang X (2011) Isocratic method for affinity enrichment of covalently-linked peptides in cyanogen bromide cleavage of proteins. Proteomics
-
(2011)
Proteomics
-
-
Shi, T.1
Liu, J.2
Yan, C.3
Wang, X.4
-
58
-
-
84857097692
-
Optimizing the enrichment of cross-linked products for mass spectrometric protein analysis
-
10.1002/rcm.6150 1:CAS:528:DC%2BC38Xit1Sktbk%3D
-
R Fritzsche CH Ihling M Gotze A Sinz 2012 Optimizing the enrichment of cross-linked products for mass spectrometric protein analysis Rapid Commun Mass Spectrom 26 6 653 658 10.1002/rcm.6150 1:CAS:528:DC%2BC38Xit1Sktbk%3D
-
(2012)
Rapid Commun Mass Spectrom
, vol.26
, Issue.6
, pp. 653-658
-
-
Fritzsche, R.1
Ihling, C.H.2
Gotze, M.3
Sinz, A.4
-
59
-
-
79961213851
-
Structural analysis of a prokaryotic ribosome using a novel amidinating cross-linker and mass spectrometry
-
10.1021/pr200260n 1:CAS:528:DC%2BC3MXnvFansL0%3D
-
MA Lauber JP Reilly 2011 Structural analysis of a prokaryotic ribosome using a novel amidinating cross-linker and mass spectrometry J Proteome Res 10 8 3604 3616 10.1021/pr200260n 1:CAS:528:DC%2BC3MXnvFansL0%3D
-
(2011)
J Proteome Res
, vol.10
, Issue.8
, pp. 3604-3616
-
-
Lauber, M.A.1
Reilly, J.P.2
-
60
-
-
84857966803
-
Expanding the chemical cross-linking toolbox by the use of multiple proteases and enrichment by size exclusion chromatography
-
014126
-
A Leitner R Reischl T Walzthoeni F Herzog S Bohn F Forster R Aebersold 2012 Expanding the chemical cross-linking toolbox by the use of multiple proteases and enrichment by size exclusion chromatography Mol Cell Proteomics 11 3 M111 014126
-
(2012)
Mol Cell Proteomics
, vol.11
, Issue.3
, pp. 111
-
-
Leitner, A.1
Reischl, R.2
Walzthoeni, T.3
Herzog, F.4
Bohn, S.5
Forster, F.6
Aebersold, R.7
-
61
-
-
36049005354
-
Interactome and interface protocol (2IP): A novel strategy for high sensitivity topology mapping of protein complexes
-
10.1002/pmic.200700688 1:CAS:528:DC%2BD2sXhtlOgurrJ
-
R Weerasekera YM She KA Markham Y Bai N Opalka S Orlicky F Sicheri T Kislinger G Schmitt-Ulms 2007 Interactome and interface protocol (2IP): a novel strategy for high sensitivity topology mapping of protein complexes Proteomics 7 21 3835 3852 10.1002/pmic.200700688 1:CAS:528:DC%2BD2sXhtlOgurrJ
-
(2007)
Proteomics
, vol.7
, Issue.21
, pp. 3835-3852
-
-
Weerasekera, R.1
She, Y.M.2
Markham, K.A.3
Bai, Y.4
Opalka, N.5
Orlicky, S.6
Sicheri, F.7
Kislinger, T.8
Schmitt-Ulms, G.9
-
62
-
-
80955137946
-
Chromatin immunoprecipitation and high-throughput sequencing from paraffin-embedded pathology tissue
-
10.1038/nprot.2011.406 1:CAS:528:DC%2BC3MXhsFyltb3O
-
M Fanelli S Amatori I Barozzi S Minucci 2011 Chromatin immunoprecipitation and high-throughput sequencing from paraffin-embedded pathology tissue Nat Protoc 6 12 1905 1919 10.1038/nprot.2011.406 1:CAS:528:DC%2BC3MXhsFyltb3O
-
(2011)
Nat Protoc
, vol.6
, Issue.12
, pp. 1905-1919
-
-
Fanelli, M.1
Amatori, S.2
Barozzi, I.3
Minucci, S.4
-
63
-
-
77956314944
-
Citric acid antigen retrieval (CAAR) for tryptic peptide imaging directly on archived formalin-fixed paraffin-embedded tissue
-
10.1021/pr9011766 1:CAS:528:DC%2BC3cXptlWgtL4%3D
-
JO Gustafsson MK Oehler SR McColl P Hoffmann 2010 Citric acid antigen retrieval (CAAR) for tryptic peptide imaging directly on archived formalin-fixed paraffin-embedded tissue J Proteome Res 9 9 4315 4328 10.1021/pr9011766 1:CAS:528:DC%2BC3cXptlWgtL4%3D
-
(2010)
J Proteome Res
, vol.9
, Issue.9
, pp. 4315-4328
-
-
Gustafsson, J.O.1
Oehler, M.K.2
McColl, S.R.3
Hoffmann, P.4
-
64
-
-
80054825298
-
Proteomic analysis of formalin-fixed paraffin-embedded tissue by MALDI imaging mass spectrometry
-
10.1038/nprot.2011.388 1:CAS:528:DC%2BC3MXhtl2qu7bI
-
R Casadonte RM Caprioli 2011 Proteomic analysis of formalin-fixed paraffin-embedded tissue by MALDI imaging mass spectrometry Nat Protoc 6 11 1695 1709 10.1038/nprot.2011.388 1:CAS:528:DC%2BC3MXhtl2qu7bI
-
(2011)
Nat Protoc
, vol.6
, Issue.11
, pp. 1695-1709
-
-
Casadonte, R.1
Caprioli, R.M.2
-
65
-
-
68549098247
-
Generation of high-quality protein extracts from formalin-fixed, paraffin-embedded tissues
-
10.1002/pmic.200800971 1:CAS:528:DC%2BD1MXhtVWkurjP
-
MF Addis A Tanca D Pagnozzi S Crobu G Fanciulli P Cossu-Rocca S Uzzau 2009 Generation of high-quality protein extracts from formalin-fixed, paraffin-embedded tissues Proteomics 9 15 3815 3823 10.1002/pmic.200800971 1:CAS:528:DC%2BD1MXhtVWkurjP
-
(2009)
Proteomics
, vol.9
, Issue.15
, pp. 3815-3823
-
-
Addis, M.F.1
Tanca, A.2
Pagnozzi, D.3
Crobu, S.4
Fanciulli, G.5
Cossu-Rocca, P.6
Uzzau, S.7
-
66
-
-
77956327955
-
Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gel-based proteomics
-
10.1021/pr1004168 1:CAS:528:DC%2BC3cXpt1Cltbo%3D
-
O Azimzadeh Z Barjaktarovic M Aubele J Calzada-Wack H Sarioglu MJ Atkinson S Tapio 2010 Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gel-based proteomics J Proteome Res 9 9 4710 4720 10.1021/pr1004168 1:CAS:528:DC%2BC3cXpt1Cltbo%3D
-
(2010)
J Proteome Res
, vol.9
, Issue.9
, pp. 4710-4720
-
-
Azimzadeh, O.1
Barjaktarovic, Z.2
Aubele, M.3
Calzada-Wack, J.4
Sarioglu, H.5
Atkinson, M.J.6
Tapio, S.7
-
67
-
-
62849124399
-
Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting
-
10.1002/path.2504 1:CAS:528:DC%2BD1MXjvFOmu7Y%3D
-
NJ Nirmalan P Harnden PJ Selby RE Banks 2009 Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting J Pathol 217 4 497 506 10.1002/path.2504 1:CAS:528:DC%2BD1MXjvFOmu7Y%3D
-
(2009)
J Pathol
, vol.217
, Issue.4
, pp. 497-506
-
-
Nirmalan, N.J.1
Harnden, P.2
Selby, P.J.3
Banks, R.E.4
-
68
-
-
78650087646
-
Elevated pressure improves the extraction and identification of proteins recovered from formalin-fixed, paraffin-embedded tissue surrogates
-
10.1371/journal.pone.0014253
-
CB Fowler IE Chesnick CD Moore TJ O'Leary JT Mason 2010 Elevated pressure improves the extraction and identification of proteins recovered from formalin-fixed, paraffin-embedded tissue surrogates PLoS One 5 12 e14253 10.1371/journal.pone.0014253
-
(2010)
PLoS One
, vol.5
, Issue.12
, pp. 14253
-
-
Fowler, C.B.1
Chesnick, I.E.2
Moore, C.D.3
O'Leary, T.J.4
Mason, J.T.5
-
69
-
-
28644451439
-
Proteomic analysis of formalin-fixed prostate cancer tissue
-
10.1074/mcp.M500102-MCP200 1:CAS:528:DC%2BD2MXht1Cgtb%2FO
-
BL Hood MM Darfler TG Guiel B Furusato DA Lucas BR Ringeisen IA Sesterhenn TP Conrads TD Veenstra DB Krizman 2005 Proteomic analysis of formalin-fixed prostate cancer tissue Mol Cell Proteomics 4 11 1741 1753 10.1074/mcp.M500102-MCP200 1:CAS:528:DC%2BD2MXht1Cgtb%2FO
-
(2005)
Mol Cell Proteomics
, vol.4
, Issue.11
, pp. 1741-1753
-
-
Hood, B.L.1
Darfler, M.M.2
Guiel, T.G.3
Furusato, B.4
Lucas, D.A.5
Ringeisen, B.R.6
Sesterhenn, I.A.7
Conrads, T.P.8
Veenstra, T.D.9
Krizman, D.B.10
-
70
-
-
70149108744
-
Quantitative proteomics using formalin-fixed paraffin-embedded tissues of oral squamous cell carcinoma
-
10.1111/j.1349-7006.2009.01227.x 1:CAS:528:DC%2BD1MXhtFOhurvL
-
A Negishi M Masuda M Ono K Honda M Shitashige R Satow T Sakuma H Kuwabara Y Nakanishi Y Kanai K Omura S Hirohashi T Yamada 2009 Quantitative proteomics using formalin-fixed paraffin-embedded tissues of oral squamous cell carcinoma Cancer Sci 100 9 1605 1611 10.1111/j.1349-7006.2009.01227.x 1:CAS:528: DC%2BD1MXhtFOhurvL
-
(2009)
Cancer Sci
, vol.100
, Issue.9
, pp. 1605-1611
-
-
Negishi, A.1
Masuda, M.2
Ono, M.3
Honda, K.4
Shitashige, M.5
Satow, R.6
Sakuma, T.7
Kuwabara, H.8
Nakanishi, Y.9
Kanai, Y.10
Omura, K.11
Hirohashi, S.12
Yamada, T.13
-
71
-
-
78651516681
-
Proteomic analysis of formalin-fixed, paraffin-embedded lung neuroendocrine tumor samples from hospital archives
-
10.1016/j.jprot.2010.12.001 1:CAS:528:DC%2BC3MXhtVWqs7w%3D
-
A Tanca MF Addis D Pagnozzi P Cossu-Rocca R Tonelli G Falchi A Eccher T Roggio G Fanciulli S Uzzau 2011 Proteomic analysis of formalin-fixed, paraffin-embedded lung neuroendocrine tumor samples from hospital archives J Proteomics 74 3 359 370 10.1016/j.jprot.2010.12.001 1:CAS:528: DC%2BC3MXhtVWqs7w%3D
-
(2011)
J Proteomics
, vol.74
, Issue.3
, pp. 359-370
-
-
Tanca, A.1
Addis, M.F.2
Pagnozzi, D.3
Cossu-Rocca, P.4
Tonelli, R.5
Falchi, G.6
Eccher, A.7
Roggio, T.8
Fanciulli, G.9
Uzzau, S.10
-
72
-
-
39749160439
-
Proteomic analysis of laser-captured paraffin-embedded tissues: A molecular portrait of head and neck cancer progression
-
10.1158/1078-0432.CCR-07-1497 1:CAS:528:DC%2BD1cXhvF2gtbk%3D
-
V Patel BL Hood AA Molinolo NH Lee TP Conrads JC Braisted DB Krizman TD Veenstra JS Gutkind 2008 Proteomic analysis of laser-captured paraffin-embedded tissues: a molecular portrait of head and neck cancer progression Clin Cancer Res 14 4 1002 1014 10.1158/1078-0432.CCR-07-1497 1:CAS:528:DC%2BD1cXhvF2gtbk%3D
-
(2008)
Clin Cancer Res
, vol.14
, Issue.4
, pp. 1002-1014
-
-
Patel, V.1
Hood, B.L.2
Molinolo, A.A.3
Lee, N.H.4
Conrads, T.P.5
Braisted, J.C.6
Krizman, D.B.7
Veenstra, T.D.8
Gutkind, J.S.9
-
73
-
-
69249119365
-
Mapping the local protein interactome of the NuA3 histone acetyltransferase
-
10.1002/pro.212 1:CAS:528:DC%2BD1MXhtVKnt7rO
-
SK Smart SG Mackintosh RD Edmondson SD Taverna AJ Tackett 2009 Mapping the local protein interactome of the NuA3 histone acetyltransferase Protein Sci 18 9 1987 1997 10.1002/pro.212 1:CAS:528:DC%2BD1MXhtVKnt7rO
-
(2009)
Protein Sci
, vol.18
, Issue.9
, pp. 1987-1997
-
-
Smart, S.K.1
MacKintosh, S.G.2
Edmondson, R.D.3
Taverna, S.D.4
Tackett, A.J.5
-
74
-
-
65249116382
-
A method for investigating protein-protein interactions related to Salmonella typhimurium pathogenesis
-
10.1021/pr800865d 1:CAS:528:DC%2BD1MXhs1Oitbg%3D
-
SM Chowdhury L Shi H Yoon C Ansong LM Rommereim AD Norbeck KJ Auberry RJ Moore JN Adkins F Heffron RD Smith 2009 A method for investigating protein-protein interactions related to Salmonella typhimurium pathogenesis J Proteome Res 8 3 1504 1514 10.1021/pr800865d 1:CAS:528:DC%2BD1MXhs1Oitbg%3D
-
(2009)
J Proteome Res
, vol.8
, Issue.3
, pp. 1504-1514
-
-
Chowdhury, S.M.1
Shi, L.2
Yoon, H.3
Ansong, C.4
Rommereim, L.M.5
Norbeck, A.D.6
Auberry, K.J.7
Moore, R.J.8
Adkins, J.N.9
Heffron, F.10
Smith, R.D.11
-
76
-
-
77950642747
-
Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy
-
10.1021/pr1000175 1:CAS:528:DC%2BC3cXivFGiur8%3D
-
RM Kaake T Milenkovic N Przulj P Kaiser L Huang 2010 Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy J Proteome Res 9 4 2016 2029 10.1021/pr1000175 1:CAS:528:DC%2BC3cXivFGiur8%3D
-
(2010)
J Proteome Res
, vol.9
, Issue.4
, pp. 2016-2029
-
-
Kaake, R.M.1
Milenkovic, T.2
Przulj, N.3
Kaiser, P.4
Huang, L.5
-
77
-
-
79955780957
-
Membrane-SPINE: An improved method to identify protein-protein interaction partners of membrane proteins in vivo
-
10.1002/pmic.201000558
-
VS Muller PR Jungblut TF Meyer S Hunke 2011 Membrane-SPINE: an improved method to identify protein-protein interaction partners of membrane proteins in vivo Proteomics 11 10 2124 2128 10.1002/pmic.201000558
-
(2011)
Proteomics
, vol.11
, Issue.10
, pp. 2124-2128
-
-
Muller, V.S.1
Jungblut, P.R.2
Meyer, T.F.3
Hunke, S.4
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