-
1
-
-
77954464041
-
Proteomics: A pragmatic perspective
-
Mallick, P.; Kuster, B. Proteomics: a pragmatic perspective Nat. Biotechnol. 2010, 28 (7) 695-709
-
(2010)
Nat. Biotechnol.
, vol.28
, Issue.7
, pp. 695-709
-
-
Mallick, P.1
Kuster, B.2
-
2
-
-
33646698472
-
Protein extraction from formalin-fixed, paraffin-embedded tissue sections: Quality evaluation by mass spectrometry
-
Shi, S.-R.; Liu, C.; Balgley, B. M.; Lee, C.; Taylor, C. R. Protein extraction from formalin-fixed, paraffin-embedded tissue sections: quality evaluation by mass spectrometry J. Histochem. Cytochem. 2006, 54 (6) 739-43
-
(2006)
J. Histochem. Cytochem.
, vol.54
, Issue.6
, pp. 739-743
-
-
Shi, S.-R.1
Liu, C.2
Balgley, B.M.3
Lee, C.4
Taylor, C.R.5
-
3
-
-
77954378942
-
Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry
-
Ostasiewicz, P.; Zielinska, D. F.; Mann, M.; Wisniewski, J. R. Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry J. Proteome Res. 2010, 9 (7) 3688-700
-
(2010)
J. Proteome Res.
, vol.9
, Issue.7
, pp. 3688-3700
-
-
Ostasiewicz, P.1
Zielinska, D.F.2
Mann, M.3
Wisniewski, J.R.4
-
4
-
-
28644451439
-
Proteomic analysis of formalin-fixed prostate cancer tissue
-
Hood, B. L.; Darfler, M. M.; Guiel, T. G.; Furusato, B.; Lucas, D. A.; Ringeisen, B. R.; Sesterhenn, I. A.; Conrads, T. P.; Veenstra, T. D.; Krizman, D. B. Proteomic analysis of formalin-fixed prostate cancer tissue Mol. Cell. Proteomics 2005, 4 (11) 1741-53
-
(2005)
Mol. Cell. Proteomics
, vol.4
, Issue.11
, pp. 1741-1753
-
-
Hood, B.L.1
Darfler, M.M.2
Guiel, T.G.3
Furusato, B.4
Lucas, D.A.5
Ringeisen, B.R.6
Sesterhenn, I.A.7
Conrads, T.P.8
Veenstra, T.D.9
Krizman, D.B.10
-
5
-
-
39749160439
-
Proteomic analysis of laser-captured paraffin-embedded tissues: A molecular portrait of head and neck cancer progression
-
Patel, V.; Hood, B. L.; Molinolo, A. A.; Lee, N. H.; Conrads, T. P.; Braisted, J. C.; Krizman, D. B.; Veenstra, T. D.; Gutkind, J. S. Proteomic analysis of laser-captured paraffin-embedded tissues: a molecular portrait of head and neck cancer progression Clin. Cancer Res. 2008, 14 (4) 1002-14
-
(2008)
Clin. Cancer Res.
, vol.14
, Issue.4
, pp. 1002-1014
-
-
Patel, V.1
Hood, B.L.2
Molinolo, A.A.3
Lee, N.H.4
Conrads, T.P.5
Braisted, J.C.6
Krizman, D.B.7
Veenstra, T.D.8
Gutkind, J.S.9
-
6
-
-
77956327955
-
Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gel-based proteomics
-
Azimzadeh, O.; Barjaktarovic, Z.; Aubele, M.; Calzada-Wack, J.; Sarioglu, H.; Atkinson, M.; Tapio, S. Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gel-based proteomics J. Proteome Res. 2010, 9, 4710-4720
-
(2010)
J. Proteome Res.
, vol.9
, pp. 4710-4720
-
-
Azimzadeh, O.1
Barjaktarovic, Z.2
Aubele, M.3
Calzada-Wack, J.4
Sarioglu, H.5
Atkinson, M.6
Tapio, S.7
-
7
-
-
61849114172
-
Evaluation of archival time on shotgun proteomics of formalin-fixed and paraffin-embedded tissues
-
Balgley, B. M.; Guo, T.; Zhao, K.; Fang, X.; Tavassoli, F. A.; Lee, C. S. Evaluation of archival time on shotgun proteomics of formalin-fixed and paraffin-embedded tissues J. Proteome Res. 2009, 8 (2) 917-25
-
(2009)
J. Proteome Res.
, vol.8
, Issue.2
, pp. 917-925
-
-
Balgley, B.M.1
Guo, T.2
Zhao, K.3
Fang, X.4
Tavassoli, F.A.5
Lee, C.S.6
-
8
-
-
77956108790
-
MTRAQ-based quantification of potential endometrial carcinoma biomarkers from archived formalin-fixed paraffin-embedded tissues
-
DeSouza, L. V.; Krakovska, O.; Darfler, M. M.; Krizman, D. B.; Romaschin, A. D.; Colgan, T. J.; Siu, K. W. mTRAQ-based quantification of potential endometrial carcinoma biomarkers from archived formalin-fixed paraffin-embedded tissues Proteomics 2010, 10 (17) 3108-16
-
(2010)
Proteomics
, vol.10
, Issue.17
, pp. 3108-3116
-
-
Desouza, L.V.1
Krakovska, O.2
Darfler, M.M.3
Krizman, D.B.4
Romaschin, A.D.5
Colgan, T.J.6
Siu, K.W.7
-
9
-
-
77952764025
-
Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry
-
Xiao, Z.; Li, G.; Chen, Y.; Li, M.; Peng, F.; Li, C.; Li, F.; Yu, Y.; Ouyang, Y.; Xiao, Z.; Chen, Z. Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry J. Histochem. Cytochem. 2010, 58 (6) 517-27
-
(2010)
J. Histochem. Cytochem.
, vol.58
, Issue.6
, pp. 517-527
-
-
Xiao, Z.1
Li, G.2
Chen, Y.3
Li, M.4
Peng, F.5
Li, C.6
Li, F.7
Yu, Y.8
Ouyang, Y.9
Xiao, Z.10
Chen, Z.11
-
10
-
-
64649100925
-
Clinical proteomic applications of formalin-fixed paraffin-embedded tissues
-
Blonder, J.; Veenstra, T. D. Clinical proteomic applications of formalin-fixed paraffin-embedded tissues Clin. Lab. Med. 2009, 29 (1) 101-13
-
(2009)
Clin. Lab. Med.
, vol.29
, Issue.1
, pp. 101-113
-
-
Blonder, J.1
Veenstra, T.D.2
-
11
-
-
46049096567
-
Modeling formalin fixation and histological processing with bovine ribonuclease A: Effects of ethanol dehydration on reversal of formaldehyde-induced cross-links
-
Fowler, C. B.; OLeary, T. J.; Mason, J. T. Modeling formalin fixation and histological processing with bovine ribonuclease A: Effects of ethanol dehydration on reversal of formaldehyde-induced cross-links Lab. Invest. 2008, 88 (7) 785-91
-
(2008)
Lab. Invest.
, vol.88
, Issue.7
, pp. 785-791
-
-
Fowler, C.B.1
Oleary, T.J.2
Mason, J.T.3
-
12
-
-
73549102171
-
Udp-glucose dehydrogenase as a novel field-specific candidate biomarker of prostate cancer
-
Huang, D.; Casale, G. P.; Tian, J.; Lele, S. M.; Pisarev, V. M.; Simpson, M. A.; Hemstreet, G. P., III. Udp-glucose dehydrogenase as a novel field-specific candidate biomarker of prostate cancer Int. J. Cancer 2010, 126 (2) 315-27
-
(2010)
Int. J. Cancer
, vol.126
, Issue.2
, pp. 315-327
-
-
Huang, D.1
Casale, G.P.2
Tian, J.3
Lele, S.M.4
Pisarev, V.M.5
Simpson, M.A.6
Hemstreet Iii., G.P.7
-
13
-
-
34447512839
-
Quantitative fluorescence imaging analysis for cancer biomarker discovery: Application to beta-catenin in archived prostate specimens
-
Huang, D.; Casale, G. P.; Tian, J.; Wehbi, N. K.; Abrahams, N. A.; Kaleem, Z.; Smith, L. M.; Johansson, S. L.; Elkahwaji, J. E.; Hemstreet, G. P., III. Quantitative fluorescence imaging analysis for cancer biomarker discovery: application to beta-catenin in archived prostate specimens Cancer Epidemiol. Biomarkers Prev. 2007, 16 (7) 1371-81
-
(2007)
Cancer Epidemiol. Biomarkers Prev.
, vol.16
, Issue.7
, pp. 1371-1381
-
-
Huang, D.1
Casale, G.P.2
Tian, J.3
Wehbi, N.K.4
Abrahams, N.A.5
Kaleem, Z.6
Smith, L.M.7
Johansson, S.L.8
Elkahwaji, J.E.9
Hemstreet Iii., G.P.10
-
14
-
-
70350565066
-
Tissue-based quantification of 8-hydroxy-2-deoxyguanosine in human prostate biopsies using quantitative fluorescence imaging analysis
-
Richardson, T.; McCanse, W.; Casale, G. P.; Huang, D.; Tian, J.; Elkahwaji, J. E.; Lele, S.; Hemstreet, G. P. Tissue-based quantification of 8-hydroxy-2-deoxyguanosine in human prostate biopsies using quantitative fluorescence imaging analysis Urology 2009, 74 (5) 1174-9
-
(2009)
Urology
, vol.74
, Issue.5
, pp. 1174-1179
-
-
Richardson, T.1
McCanse, W.2
Casale, G.P.3
Huang, D.4
Tian, J.5
Elkahwaji, J.E.6
Lele, S.7
Hemstreet, G.P.8
-
15
-
-
80054825298
-
Proteomic analysis of formalin-fixed paraffin-embedded tissue by MALDI imaging mass spectrometry
-
Casadonte, R.; Caprioli, R. M. Proteomic analysis of formalin-fixed paraffin-embedded tissue by MALDI imaging mass spectrometry Nat. Protoc. 2011, 6 (11) 1695-709
-
(2011)
Nat. Protoc.
, vol.6
, Issue.11
, pp. 1695-1709
-
-
Casadonte, R.1
Caprioli, R.M.2
-
16
-
-
53549127586
-
Protein unlocking procedures of formalin-fixed paraffin-embedded tissues: Application to MALDI-TOF imaging MS investigations
-
Ronci, M.; Bonanno, E.; Colantoni, A.; Pieroni, L.; Di, I. C.; Spagnoli, L. G.; Federici, G.; Urbani, A. Protein unlocking procedures of formalin-fixed paraffin-embedded tissues: application to MALDI-TOF imaging MS investigations Proteomics 2008, 8 (18) 3702-14
-
(2008)
Proteomics
, vol.8
, Issue.18
, pp. 3702-3714
-
-
Ronci, M.1
Bonanno, E.2
Colantoni, A.3
Pieroni, L.4
Di, I.C.5
Spagnoli, L.G.6
Federici, G.7
Urbani, A.8
-
17
-
-
78349308988
-
MALDI direct analysis and imaging of frozen versus FFPE tissues: What strategy for which sample?
-
30322
-
Wisztorski, M.; Franck, J.; Salzet, M.; Fournier, I. MALDI direct analysis and imaging of frozen versus FFPE tissues: what strategy for which sample? Methods Mol. Biol. 2010, 656:303-22, 303-22
-
(2010)
Methods Mol. Biol.
, vol.656
, pp. 303-322
-
-
Wisztorski, M.1
Franck, J.2
Salzet, M.3
Fournier, I.4
-
18
-
-
68549098247
-
Generation of high-quality protein extracts from formalin-fixed, paraffin-embedded tissues
-
Addis, M. F.; Tanca, A.; Pagnozzi, D.; Crobu, S.; Fanciulli, G.; Cossu-Rocca, P.; Uzzau, S. Generation of high-quality protein extracts from formalin-fixed, paraffin-embedded tissues Proteomics 2009, 9 (15) 3815-23
-
(2009)
Proteomics
, vol.9
, Issue.15
, pp. 3815-3823
-
-
Addis, M.F.1
Tanca, A.2
Pagnozzi, D.3
Crobu, S.4
Fanciulli, G.5
Cossu-Rocca, P.6
Uzzau, S.7
-
19
-
-
53449083436
-
Application of a global proteomic approach to archival precursor lesions: Deleted in malignant brain tumors 1 and tissue transglutaminase 2 are upregulated in pancreatic cancers
-
Cheung, W.; Darfler, M.; Alvarez, H.; Hood, B. L.; Conrads, T. P.; Habbe, N.; Krizman, D. B.; Mollenhaur, J.; Feldmann, G.; Maitra, A. Application of a global proteomic approach to archival precursor lesions: Deleted in malignant brain tumors 1 and tissue transglutaminase 2 are upregulated in pancreatic cancers Pancreatology 2008, 8, 608-16
-
(2008)
Pancreatology
, vol.8
, pp. 608-616
-
-
Cheung, W.1
Darfler, M.2
Alvarez, H.3
Hood, B.L.4
Conrads, T.P.5
Habbe, N.6
Krizman, D.B.7
Mollenhaur, J.8
Feldmann, G.9
Maitra, A.10
-
20
-
-
27144511949
-
Liquid Tissue: Proteomic profiling of formalin-fixed tissues
-
Prieto, D. A.; Hood, B. L.; Darfler, M. M.; Guiel, T. G.; Lucas, D. A.; Conrads, T. P.; Veenstra, T. D.; Krizman, D. B. Liquid Tissue: proteomic profiling of formalin-fixed tissues Biotechniques 2005, 38 (Suppl) 32-5
-
(2005)
Biotechniques
, vol.38
, Issue.SUPPL.
, pp. 32-35
-
-
Prieto, D.A.1
Hood, B.L.2
Darfler, M.M.3
Guiel, T.G.4
Lucas, D.A.5
Conrads, T.P.6
Veenstra, T.D.7
Krizman, D.B.8
-
21
-
-
70449433878
-
Protein fixation and antigen retrieval: Chemical studies
-
OLeary, T. J.; Fowler, C. B.; Evers, D. L.; Mason, J. T. Protein fixation and antigen retrieval: chemical studies Biotechnol. Histochem. 2009, 84 (5) 217-21
-
(2009)
Biotechnol. Histochem.
, vol.84
, Issue.5
, pp. 217-221
-
-
Oleary, T.J.1
Fowler, C.B.2
Evers, D.L.3
Mason, J.T.4
-
22
-
-
2142645898
-
Modeling formalin fixation and antigen retrieval with bovine pancreatic ribonuclease A: I-structural and functional alterations
-
Rait, V. K.; OLeary, T. J.; Mason, J. T. Modeling formalin fixation and antigen retrieval with bovine pancreatic ribonuclease A: I-structural and functional alterations Lab. Invest. 2004, 84 (3) 292-9
-
(2004)
Lab. Invest.
, vol.84
, Issue.3
, pp. 292-299
-
-
Rait, V.K.1
Oleary, T.J.2
Mason, J.T.3
-
23
-
-
34447566048
-
"Tissue surrogates" as a model for archival formalin-fixed paraffin-embedded tissues
-
Fowler, C. B.; Cunningham, R. E.; OLeary, T. J.; Mason, J. T. "Tissue surrogates" as a model for archival formalin-fixed paraffin-embedded tissues Lab. Invest. 2007, 87 (8) 836-46
-
(2007)
Lab. Invest.
, vol.87
, Issue.8
, pp. 836-846
-
-
Fowler, C.B.1
Cunningham, R.E.2
Oleary, T.J.3
Mason, J.T.4
-
24
-
-
0037171122
-
High pressure effects on biological macromolecules: From structural changes to alteration of cellular processes
-
Balny, C.; Masson, P.; Heremans, K. High pressure effects on biological macromolecules: from structural changes to alteration of cellular processes Biochim. Biophys. Acta 2002, 1595 (1-2) 3-10
-
(2002)
Biochim. Biophys. Acta
, vol.1595
, Issue.1-2
, pp. 3-10
-
-
Balny, C.1
Masson, P.2
Heremans, K.3
-
25
-
-
38549099794
-
Elevated hydrostatic pressure promotes protein recovery from formalin-fixed, paraffin-embedded tissue surrogates
-
Fowler, C. B.; Cunningham, R. E.; Waybright, T. J.; Blonder, J.; Veenstra, T. D.; OLeary, T. J.; Mason, J. T. Elevated hydrostatic pressure promotes protein recovery from formalin-fixed, paraffin-embedded tissue surrogates Lab. Invest. 2008, 88 (2) 185-95
-
(2008)
Lab. Invest.
, vol.88
, Issue.2
, pp. 185-195
-
-
Fowler, C.B.1
Cunningham, R.E.2
Waybright, T.J.3
Blonder, J.4
Veenstra, T.D.5
Oleary, T.J.6
Mason, J.T.7
-
26
-
-
78650087646
-
Elevated pressure improves the extraction and identification of proteins recovered from formalin-fixed, paraffin-embedded tissue surrogates
-
Fowler, C. B.; Chesnick, I. E.; Moore, C. D.; OLeary, T. J.; Mason, J. T. Elevated pressure improves the extraction and identification of proteins recovered from formalin-fixed, paraffin-embedded tissue surrogates PLoS One 2010, 5 (12) e14253
-
(2010)
PLoS One
, vol.5
, Issue.12
, pp. 14253
-
-
Fowler, C.B.1
Chesnick, I.E.2
Moore, C.D.3
Oleary, T.J.4
Mason, J.T.5
-
27
-
-
77449113523
-
Processing of tissue specimens
-
Bratthauer, G. L. Processing of tissue specimens Methods Mol. Biol. 2010, 588, 93-102
-
(2010)
Methods Mol. Biol.
, vol.588
, pp. 93-102
-
-
Bratthauer, G.L.1
-
28
-
-
34250840587
-
Proteome analysis of microdissected formalin-fixed and paraffin-embedded tissue specimens
-
Guo, T.; Wang, W.; Rudnick, P. A.; Song, T.; Li, J.; Zhuang, Z.; Weil, R. J.; DeVoe, D. L.; Lee, C. S.; Balgley, B. M. Proteome analysis of microdissected formalin-fixed and paraffin-embedded tissue specimens J. Histochem. Cytochem. 2007, 55 (7) 763-72
-
(2007)
J. Histochem. Cytochem.
, vol.55
, Issue.7
, pp. 763-772
-
-
Guo, T.1
Wang, W.2
Rudnick, P.A.3
Song, T.4
Li, J.5
Zhuang, Z.6
Weil, R.J.7
Devoe, D.L.8
Lee, C.S.9
Balgley, B.M.10
-
29
-
-
71049161234
-
Molecular profiling of signalling pathways in formalin-fixed and paraffin-embedded cancer tissues
-
Berg, D.; Hipp, S.; Malinowsky, K.; Bollner, C.; Becker, K. F. Molecular profiling of signalling pathways in formalin-fixed and paraffin-embedded cancer tissues Eur. J. Cancer 2010, 46 (1) 47-55
-
(2010)
Eur. J. Cancer
, vol.46
, Issue.1
, pp. 47-55
-
-
Berg, D.1
Hipp, S.2
Malinowsky, K.3
Bollner, C.4
Becker, K.F.5
-
30
-
-
0025829609
-
Antigen retrieval in formalin-fixed, paraffin-embedded tissues: An enhancement method for immunohistochemical staining based on microwave oven heating of tissue sections
-
Shi, S. R.; Key, M. E.; Kalra, K. L. Antigen retrieval in formalin-fixed, paraffin-embedded tissues: an enhancement method for immunohistochemical staining based on microwave oven heating of tissue sections J. Histochem. Cytochem. 1991, 39 (6) 741-8
-
(1991)
J. Histochem. Cytochem.
, vol.39
, Issue.6
, pp. 741-748
-
-
Shi, S.R.1
Key, M.E.2
Kalra, K.L.3
-
31
-
-
78650837904
-
Study of Formalin-Fixation and Heat-Induced Antigen Retrieval
-
Taylor, C. Shi, S.-R. Wiley-Blackwell: Hoboken, NJ
-
Mason, J. T.; Fowler, C. B.; OLeary, T. J. Study of Formalin-Fixation and Heat-Induced Antigen Retrieval. In Immunohistochemistry & Antigen Retrieval Technique Based Research & Diagnostics; Taylor, C.; Shi, S.-R., Eds.; Wiley-Blackwell: Hoboken, NJ, 2010; pp 253-286.
-
(2010)
Immunohistochemistry & Antigen Retrieval Technique Based Research & Diagnostics
, pp. 253-286
-
-
Mason, J.T.1
Fowler, C.B.2
Oleary, T.J.3
-
32
-
-
0030846045
-
Antigen retrieval techniques in immunohistochemistry: Comparison of different methods
-
Pileri, S. A.; Roncador, G.; Ceccarelli, C.; Piccioli, M.; Briskomatis, A.; Sabattini, E.; Ascani, S.; Santini, D.; Piccaluga, P. P.; Leone, O.; Damiani, S.; Ercolessi, C.; Sandri, F.; Pieri, F.; Leoncini, L.; Falini, B. Antigen retrieval techniques in immunohistochemistry: comparison of different methods J. Pathol. 1997, 183 (1) 116-23
-
(1997)
J. Pathol.
, vol.183
, Issue.1
, pp. 116-123
-
-
Pileri, S.A.1
Roncador, G.2
Ceccarelli, C.3
Piccioli, M.4
Briskomatis, A.5
Sabattini, E.6
Ascani, S.7
Santini, D.8
Piccaluga, P.P.9
Leone, O.10
Damiani, S.11
Ercolessi, C.12
Sandri, F.13
Pieri, F.14
Leoncini, L.15
Falini, B.16
-
33
-
-
59349119394
-
State of the art in antigen retrieval for immunohistochemistry
-
DAmico, F.; Skarmoutsou, E.; Stivala, F. State of the art in antigen retrieval for immunohistochemistry J. Immunol. Methods 2009, 341 (1-2) 1-18
-
(2009)
J. Immunol. Methods
, vol.341
, Issue.1-2
, pp. 1-18
-
-
Damico, F.1
Skarmoutsou, E.2
Stivala, F.3
|