Evaluation of the suitability of archival Bouin-fixed paraffin-embedded tissue specimens to proteomic investigation

Electrophoresis

Volumn 33, Issue 9-10, 2012, Pages 1375-1384

  Tanca, Alessandro ^a   Addis, Maria Filippa ^a   Simula, Maria Paola ^b   Pagnozzi, Daniela ^a   Biosa, Grazia ^a   Pisanu, Salvatore ^a   Garziera, Marica ^b   Cannizzaro, Renato ^b   Canzonieri, Vincenzo ^b   De Re, Valli ^b   Uzzau, Sergio ^a,c  

^a Porto Conte Ricerche Srl   (Italy)

^b CENTRO DI RIFERIMENTO ONCOLOGICO   (Italy)

^c UNIVERSITY OF SASSARI   (Italy)

Author keywords

2D PAGE; Archival tissues; Bouin's fixative; GeLC MS MS; Mass spectrometry; Proteomics

Indexed keywords

HISTOLOGY; MASS SPECTROMETRY; MOLECULAR BIOLOGY; PROTEINS; TISSUE; TISSUE ENGINEERING;

2D-PAGE; ARCHIVAL TISSUES; BOUIN FIXATIVE; CLINICAL INVESTIGATION; GELC-MS/MS; PROTEOMIC STUDIES; PROTEOMICS; SYSTEMATIC STUDY; TISSUE SPECIMENS; TUMOR SAMPLES;

PARAFFINS;

BOUIN SOLUTIION; FIXATIVE; PARAFFIN; TUMOR MARKER; UNCLASSIFIED DRUG;

ARTICLE; CLINICAL ARTICLE; CONTROLLED STUDY; HISTOPATHOLOGY; HUMAN; HUMAN TISSUE; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MOLECULAR BIOLOGY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN ANALYSIS; PROTEIN ISOLATION; PROTEOMICS; QUALITATIVE ANALYSIS; STOMACH CANCER; STOMACH FUNCTION; TISSUE SECTION; TWO DIMENSIONAL GEL ELECTROPHORESIS;

EID: 84861715116     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.201200026     Document Type: Article

References (46)

1. Fox, C., Johnson, F., Whiting, J., Roller, P., J. Histochem. Cytochem. 1985, 33, 845-853.
2. Bancroft, J. D., Gamble, M., Theory and Practice of Histological Techniques, Churchill Livingstone, London 2007.
3. Ortiz-Hidalgo, C., Arch. Pathol. Lab. Med. 1992, 116, 882-884.
4. Meyer, W., Hornickel, I. N., in: Méndez-Vilas, A., Dìaz, J. (Eds.), Microscopy: Science, Technology, Applications and Education, Formatex Research Centre, Badajoz 2010, pp. 953-959.
5. Longy, M., Duboue, B., Soubeyran, P., Moynet, D., Diagn. Mol. Pathol. 1997, 6, 167-173.
6. Gloghini, A., Canal, B., Klein, U., Dal Maso, L., Perin, T., Dalla-Favera, R., Carbone, A., J. Mol. Diagn. 2004, 6, 290-296.
7. Ananthanarayanan, V., Pins, M. R., Meyer, R. E., Gann, P. H., J. Clin. Pathol. 2005, 58, 322-324.
8. Bonin, S., Petrera, F., Rosai, J., Stanta, G., J. Clin. Pathol. 2005, 58, 313-316.
9. Gagnon, J. F., Sanschagrin, F., Jacob, S., Provencher, L., Morin, C., Diorio, C., Appl. Immunohistochem. Mol. Morphol. 2011, 19, 168-172.
10. Conti, C. J., Larcher, F., Chesner, J., Aldaz, C. M., J. Histochem. Cytochem. 1988, 36, 547-550.
11. Ahram, M., Flaig, M. J., Gillespie, J. W., Duray, P. H., Linehan, W. M., Ornstein, D. K., Niu, S., Zhao, Y., Petricoin, E. F., 3rd, Emmert-Buck, M. R., Proteomics 2003, 3, 413-421.
12. Blonder, J., Veenstra, T. D., Clin. Lab. Med. 2009, 29, 101-113.
13. Shi, S., Key, M., Kalra, K., J. Histochem. Cytochem. 1991, 39, 741-748.
14. Shi, S.-R., Shi, Y., Taylor, C. R., J. Histochem. Cytochem. 2011, 59, 13-32.
15. Hood, B. L., Conrads, T. P., Veenstra, T. D., Brief. Funct. Genomic. Proteomic. 2006, 5, 169-175.
16. Ralton, L. D., Murray, G. I., J. Clin. Pathol. 2011, 64, 297-302.
17. Tanca, A., Pagnozzi, D., Addis, M. F., Proteomics Clin. Appl. 2012, 6, 7-21.
18. Addis, M. F., Tanca, A., Pagnozzi, D., Rocca, S., Uzzau, S., Proteomics 2009, 9, 4329-4339.
19. Ostasiewicz, P., Zielinska, D. F., Mann, M., Wiśniewski, J. R., J. Proteome Res. 2010, 9, 3688-3700.
20. Rocken, C., Wilhelm, S., J. Lab. Clin. Med. 2005, 146, 244-250.
21. Addis, M. F., Tanca, A., Pagnozzi, D., Crobu, S., Fanciulli, G., Cossu-Rocca, P., Uzzau, S., Proteomics 2009, 9, 3815-3823.
22. Laemmli, U. K., Nature 1970, 227, 680-685.
23. Pisanu, S., Ghisaura, S., Pagnozzi, D., Biosa, G., Tanca, A., Roggio, T., Uzzau, S., Addis, M. F., J. Proteomics 2011, 74, 350-358.
24. Gasteiger, E., Gattiker, A., Hoogland, C., Ivanyi, I., Appel, R. D., Bairoch, A., Nucleic Acids Res. 2003, 31, 3784-3788.
25. Old, W. M., Meyer-Arendt, K., Aveline-Wolf, L., Pierce, K. G., Mendoza, A., Sevinsky, J. R., Resing, K. A., Ahn, N. G., Mol. Cell. Proteomics 2005, 4, 1487-1502.
26. Zybailov, B., Mosley, A. L., Sardiu, M. E., Coleman, M. K., Florens, L., Washburn, M. P., J. Proteome Res. 2006, 5, 2339-2347.
27. Tanca, A., Pagnozzi, D., Falchi, G., Tonelli, R., Rocca, S., Roggio, T., Uzzau, S., Addis, M. F., Proteomics 2011, 11, 1005-1011.
28. Tanca, A., Addis, M. F., Pagnozzi, D., Cossu-Rocca, P., Tonelli, R., Falchi, G., Eccher, A., Roggio, T., Fanciulli, G., Uzzau, S., J. Proteomics 2011, 74, 359-370.
29. Wang, X. H., Zhang, L. H., Zhong, X. Y., Xing, X. F., Liu, Y. Q., Niu, Z. J., Peng, Y., Du, H., Zhang, G. G., Hu, Y., Liu, N., Zhu, Y. B., Ge, S. H., Zhao, W., Lu, A. P., Li, J. Y., Ji, J. F., Am. J. Pathol. 2010, 177, 586-597.
30. Yang, Y. Q., Zhang, L. J., Dong, H., Jiang, C. L., Zhu, Z. G., Wu, J. X., Wu, Y. L., Han, J. S., Xiao, H. S., Gao, H. J., Zhang, Q. H., J. Dig. Dis. 2007, 8, 186-193.
31. Li, A., Zhou, T., Guo, L., Si, J., Oncol. Rep. 2010, 23, 1247-1255.
32. Yin, Y., Zhao, Y., Li, A.-Q., Si, J.-M., Med. Hypotheses 2009, 72, 163-165.
33. Mönig, S. P., Nolden, B., Lübke, T., Pohl, A., Grass, G., Schneider, P. M., Dienes, H. P., Hölscher, A. H., Baldus, S. E., Anticancer Res. 2007, 27, 3029-3033.
34. Kim, H. K., Reyzer, M. L., Choi, I. J., Kim, C. G., Kim, H. S., Oshima, A., Chertov, O., Colantonio, S., Fisher, R. J., Allen, J. L., Caprioli, R. M., Green, J. E., J. Proteome Res. 2010, 9, 4123-4130.
35. Yong, H. Y., Moon, A., Arch. Pharm. Res. 2007, 30, 75-81.
36. Yan, B., Yap, C. T., Wang, S., Lee, C. K., Koh, S., Omar, M. F., Salto-Tellez, M., Kumarasinghe, M. P., Acta Histochem. 2010, 112, 101-106.
37. Bai, Z., Ye, Y., Liang, B., Xu, F., Zhang, H., Zhang, Y., Peng, J., Shen, D., Cui, Z., Zhang, Z., Wang, S., Int. J. Oncol. 2011, 38, 375-383.
38. Wang, B., Li, G. X., Zhang, S. G., Wang, Q., Wen, Y. G., Tang, H. M., Zhou, C. Z., Xing, A. Y., Fan, J. W., Yan, D. W., Qiu, G. Q., Yu, Z. H., Peng, Z. H., Exp. Biol. Med. (Maywood) 2011, 236, 1247-1253.
39. Miyazaki, J., Hokari, R., Kato, S., Tsuzuki, Y., Kawaguchi, A., Nagao, S., Itoh, K., Miura, S., Oncol. Rep. 2002, 9, 1307-1312.
40. Baldus, S. E., Zirbes, T. K., Weingarten, M., Fromm, S., Glossmann, J., Hanisch, F. G., Monig, S. P., Schroder, W., Flucke, U., Thiele, J., Holscher, A. H., Dienes, H. P., Tumour Biol. 2000, 21, 258-266.
41. Ikeda, Y., Mori, M., Kajiyama, K., Haraguchi, Y., Sasaki, O., Sugimachi, K., Brit. J. Cancer 1995, 72, 189-192.
42. Isidoro, A., Martínez, M., Fernández, P. L., Ortega, A. D., Santamaría, G., Chamorro, M., Reed, J. C., Cuezva, J. M., Biochem. J. 2004, 378, 17-20.
43. DeBerardinis, R. J., Genet. Med. 2008, 10, 767-777.
44. Liu, X., Wang, X., Zhang, J., Lam, E. K. Y., Shin, V. Y., Cheng, A. S. L., Yu, J., Chan, F. K. L., Sung, J. J. Y., Jin, H. C., Oncogene 2009, 29, 442-450.
45. Kajiya, H., Takekoshi, S., Takei, M., Egashira, N., Miyakoshi, T., Serizawa, A., Teramoto, A., Osamura, R. Y., Histochem. Cell Biol. 2009, 132, 659-667.
46. Azimzadeh, O., Barjaktarovic, Z., Aubele, M., Calzada-Wack, J., Sarioglu, H., Atkinson, M. J., Tapio, S., J. Proteome Res. 2010, 9, 4710-4720.