-
1
-
-
84939254155
-
Elicitation of secondary metabolism in actinomycetes
-
Abdelmohsen U.R., Grkovic T., Balasubramanian S., Kamel M.S., Quinn R.J., Hentschel U. Elicitation of secondary metabolism in actinomycetes. Biotechnol. Adv. 2015, 33:798-811. 10.1016/j.biotechadv.2015.06.003.
-
(2015)
Biotechnol. Adv.
, vol.33
, pp. 798-811
-
-
Abdelmohsen, U.R.1
Grkovic, T.2
Balasubramanian, S.3
Kamel, M.S.4
Quinn, R.J.5
Hentschel, U.6
-
2
-
-
84870918230
-
Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature
-
Arnison P.G., Bibb M.J., Bierbaum G., Bowers A.A., Bugni T.S., Bulaj G., Camarero J.A., Campopiano D.J., Challis G.L., Clardy J., Cotter P.D., Craik D.J., Dawson M., Dittmann E., Donadio S., Dorrestein P.C., Entian K.D., Fischbach M.A., Garavelli J.S., Goransson U., Gruber C.W., Haft D.H., Hemscheidt T.K., Hertweck C., Hill C., Horswill A.R., Jaspars M., Kelly W.L., Klinman J.P., Kuipers O.P., Link A.J., Liu W., Marahiel M.A., Mitchell D.A., Moll G.N., Moore B.S., Muller R., Nair S.K., Nes I.F., Norris G.E., Olivera B.M., Onaka H., Patchett M.L., Piel J., Reaney M.J., Rebuffat S., Ross R.P., Sahl H.G., Schmidt E.W., Selsted M.E., Severinov K., Shen B., Sivonen K., Smith L., Stein T., Sussmuth R.D., Tagg J.R., Tang G.L., Truman A.W., Vederas J.C., Walsh C.T., Walton J.D., Wenzel S.C., Willey J.M., van der Donk W.A. Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature. Nat. Prod. Rep. 2013, 30:108-160. 10.1039/c2np20085f.
-
(2013)
Nat. Prod. Rep.
, vol.30
, pp. 108-160
-
-
Arnison, P.G.1
Bibb, M.J.2
Bierbaum, G.3
Bowers, A.A.4
Bugni, T.S.5
Bulaj, G.6
Camarero, J.A.7
Campopiano, D.J.8
Challis, G.L.9
Clardy, J.10
Cotter, P.D.11
Craik, D.J.12
Dawson, M.13
Dittmann, E.14
Donadio, S.15
Dorrestein, P.C.16
Entian, K.D.17
Fischbach, M.A.18
Garavelli, J.S.19
Goransson, U.20
Gruber, C.W.21
Haft, D.H.22
Hemscheidt, T.K.23
Hertweck, C.24
Hill, C.25
Horswill, A.R.26
Jaspars, M.27
Kelly, W.L.28
Klinman, J.P.29
Kuipers, O.P.30
Link, A.J.31
Liu, W.32
Marahiel, M.A.33
Mitchell, D.A.34
Moll, G.N.35
Moore, B.S.36
Muller, R.37
Nair, S.K.38
Nes, I.F.39
Norris, G.E.40
Olivera, B.M.41
Onaka, H.42
Patchett, M.L.43
Piel, J.44
Reaney, M.J.45
Rebuffat, S.46
Ross, R.P.47
Sahl, H.G.48
Schmidt, E.W.49
Selsted, M.E.50
Severinov, K.51
Shen, B.52
Sivonen, K.53
Smith, L.54
Stein, T.55
Sussmuth, R.D.56
Tagg, J.R.57
Tang, G.L.58
Truman, A.W.59
Vederas, J.C.60
Walsh, C.T.61
Walton, J.D.62
Wenzel, S.C.63
Willey, J.M.64
van der Donk, W.A.65
more..
-
3
-
-
77952517931
-
Biosynthesis: is it time to go retro?
-
Bachmann B.O. Biosynthesis: is it time to go retro?. Nat. Chem. Biol. 2010, 6:390-393. 10.1038/nchembio.377.
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 390-393
-
-
Bachmann, B.O.1
-
4
-
-
70149113922
-
Synthesis of methyl halides from biomass using engineered microbes
-
Bayer T.S., Widmaier D.M., Temme K., Mirsky E.A., Santi D.V., Voigt C.A. Synthesis of methyl halides from biomass using engineered microbes. J. Am. Chem. Soc. 2009, 131:6508-6515.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 6508-6515
-
-
Bayer, T.S.1
Widmaier, D.M.2
Temme, K.3
Mirsky, E.A.4
Santi, D.V.5
Voigt, C.A.6
-
5
-
-
45849147020
-
VelB/VeA/LaeA complex coordinates light signal with fungal development and secondary metabolism
-
Bayram O., Krappmann S., Ni M., Bok J.W., Helmstaedt K., Valerius O., Braus-Stromeyer S., Kwon N.-J., Keller N.P., Yu J.-H., Braus G.H. VelB/VeA/LaeA complex coordinates light signal with fungal development and secondary metabolism. Science 2008, 320:1504-1506. 10.1126/science.1155888.
-
(2008)
Science
, vol.320
, pp. 1504-1506
-
-
Bayram, O.1
Krappmann, S.2
Ni, M.3
Bok, J.W.4
Helmstaedt, K.5
Valerius, O.6
Braus-Stromeyer, S.7
Kwon, N.-J.8
Keller, N.P.9
Yu, J.-H.10
Braus, G.H.11
-
6
-
-
84899486357
-
Bioretrosynthetic construction of a didanosine biosynthetic pathway
-
Birmingham W.R., Starbird C.A., Panosian T.D., Nannemann D.P., Iverson T.M., Bachmann B.O. Bioretrosynthetic construction of a didanosine biosynthetic pathway. Nat. Chem. Biol. 2014, 10:392-399. 10.1038/nchembio.1494.
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 392-399
-
-
Birmingham, W.R.1
Starbird, C.A.2
Panosian, T.D.3
Nannemann, D.P.4
Iverson, T.M.5
Bachmann, B.O.6
-
7
-
-
84883353135
-
AntiSMASH 2.0-a versatile platform for genome mining of secondary metabolite producers
-
Blin K., Medema M.H., Kazempour D., Fischbach M.A., Breitling R., Takano E., Weber T. AntiSMASH 2.0-a versatile platform for genome mining of secondary metabolite producers. Nucleic Acids Res. 2013, 31:W204-W212. 10.1093/nar/gkt449.
-
(2013)
Nucleic Acids Res.
, vol.31
, pp. W204-W212
-
-
Blin, K.1
Medema, M.H.2
Kazempour, D.3
Fischbach, M.A.4
Breitling, R.5
Takano, E.6
Weber, T.7
-
8
-
-
0036902202
-
Big effects from small changes: possible ways to explore nature's chemical diversity
-
7<619::AID-CBIC619>3.0.CO;2-9
-
Bode H.B., Bethe B., Höfs R., Zeeck A. Big effects from small changes: possible ways to explore nature's chemical diversity. ChemBioChem 2002, 3:619-627. 10.1002/1439-7633(20020703)3:7<619::AID-CBIC619>3.0.CO;2-9.
-
(2002)
ChemBioChem
, vol.3
, pp. 619-627
-
-
Bode, H.B.1
Bethe, B.2
Höfs, R.3
Zeeck, A.4
-
9
-
-
67650321573
-
Chromatin-level regulation of biosynthetic gene clusters
-
Bok J.W., Chiang Y.-M., Szewczyk E., Reyes-Dominguez Y., Davidson A.D., Sanchez J.F., Lo H.-C., Watanabe K., Strauss J., Oakley B.R., Wang C.C.C., Keller N.P. Chromatin-level regulation of biosynthetic gene clusters. Nat. Chem. Biol. 2009, 5:462-464. 10.1038/nchembio.177.
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 462-464
-
-
Bok, J.W.1
Chiang, Y.-M.2
Szewczyk, E.3
Reyes-Dominguez, Y.4
Davidson, A.D.5
Sanchez, J.F.6
Lo, H.-C.7
Watanabe, K.8
Strauss, J.9
Oakley, B.R.10
Wang, C.C.C.11
Keller, N.P.12
-
10
-
-
84900848248
-
Mass spectrometry of natural products: current, emerging and future technologies
-
Bouslimani A., Sanchez L.M., Garg N., Dorrestein P.C. Mass spectrometry of natural products: current, emerging and future technologies. Nat. Prod. Rep. 2014, 31:718-729. 10.1039/c4np00044g.
-
(2014)
Nat. Prod. Rep.
, vol.31
, pp. 718-729
-
-
Bouslimani, A.1
Sanchez, L.M.2
Garg, N.3
Dorrestein, P.C.4
-
11
-
-
84871292787
-
Regulation of fungal secondary metabolism
-
Brakhage A.A. Regulation of fungal secondary metabolism. Nat. Rev. Microbiol. 2013, 11:21-32. 10.1038/nrmicro2916.
-
(2013)
Nat. Rev. Microbiol.
, vol.11
, pp. 21-32
-
-
Brakhage, A.A.1
-
12
-
-
78650198931
-
Fungal secondary metabolites - strategies to activate silent gene clusters
-
Brakhage A.A., Schroeckh V. Fungal secondary metabolites - strategies to activate silent gene clusters. Fungal Genet. Biol. 2011, 48:15-22. 10.1016/j.fgb.2010.04.004.
-
(2011)
Fungal Genet. Biol.
, vol.48
, pp. 15-22
-
-
Brakhage, A.A.1
Schroeckh, V.2
-
13
-
-
84920693527
-
Next-generation sequencing approach for connecting secondary metabolites to biosynthetic gene clusters in fungi
-
Cacho R.A., Tang Y., Chooi Y.-H. Next-generation sequencing approach for connecting secondary metabolites to biosynthetic gene clusters in fungi. Front. Microbiol. 2015, 5:774. 10.3389/fmicb.2014.00774.
-
(2015)
Front. Microbiol.
, vol.5
, pp. 774
-
-
Cacho, R.A.1
Tang, Y.2
Chooi, Y.-H.3
-
14
-
-
79851515868
-
Recent advances in awakening silent biosynthetic gene clusters and linking orphan clusters to natural products in microorganisms
-
Chiang Y.-M., Chang S.-L., Oakley B.R., Wang C.C.C. Recent advances in awakening silent biosynthetic gene clusters and linking orphan clusters to natural products in microorganisms. Curr. Opin. Chem. Biol. 2011, 15:137-143. 10.1016/j.cbpa.2010.10.011.
-
(2011)
Curr. Opin. Chem. Biol.
, vol.15
, pp. 137-143
-
-
Chiang, Y.-M.1
Chang, S.-L.2
Oakley, B.R.3
Wang, C.C.C.4
-
15
-
-
84878214376
-
An efficient system for heterologous expression of secondary metabolite genes in Aspergillus nidulans
-
Chiang Y.-M., Oakley C.E., Ahuja M., Entwistle R., Schultz A., Chang S.-L., Sung C.T., Wang C.C.C., Oakley B.R. An efficient system for heterologous expression of secondary metabolite genes in Aspergillus nidulans. J. Am. Chem. Soc. 2013, 135:7720-7731. 10.1021/ja401945a.
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 7720-7731
-
-
Chiang, Y.-M.1
Oakley, C.E.2
Ahuja, M.3
Entwistle, R.4
Schultz, A.5
Chang, S.-L.6
Sung, C.T.7
Wang, C.C.C.8
Oakley, B.R.9
-
16
-
-
84920566739
-
A chemical ecogenomics approach to understand the roles of secondary metabolites in fungal cereal pathogens
-
Chooi Y.-H., Solomon P.S. A chemical ecogenomics approach to understand the roles of secondary metabolites in fungal cereal pathogens. Front. Microbiol. 2014, 5:640. 10.3389/fmicb.2014.00640.
-
(2014)
Front. Microbiol.
, vol.5
, pp. 640
-
-
Chooi, Y.-H.1
Solomon, P.S.2
-
17
-
-
84904554933
-
Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters
-
Cimermancic P., Medema M.H., Claesen J., Kurita K., Wieland Brown L.C., Mavrommatis K., Pati A., Godfrey P.A., Koehrsen M., Clardy J., Birren B.W., Takano E., Sali A., Linington R.G., Fischbach M.A. Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters. Cell 2014, 158:412-421. 10.1016/j.cell.2014.06.034.
-
(2014)
Cell
, vol.158
, pp. 412-421
-
-
Cimermancic, P.1
Medema, M.H.2
Claesen, J.3
Kurita, K.4
Wieland Brown, L.C.5
Mavrommatis, K.6
Pati, A.7
Godfrey, P.A.8
Koehrsen, M.9
Clardy, J.10
Birren, B.W.11
Takano, E.12
Sali, A.13
Linington, R.G.14
Fischbach, M.A.15
-
18
-
-
84937761254
-
Molecular networking and pattern-based genome mining improves discovery of biosynthetic gene clusters and their products from Salinispora species
-
Duncan K.R., Crüsemann M., Lechner A., Sarkar A., Li J., Ziemert N., Wang M., Bandeira N., Moore B.S., Dorrestein P.C., Jensen P.R. Molecular networking and pattern-based genome mining improves discovery of biosynthetic gene clusters and their products from Salinispora species. Chem. Biol. 2015, 22:460-471. 10.1016/j.chembiol.2015.03.010.
-
(2015)
Chem. Biol.
, vol.22
, pp. 460-471
-
-
Duncan, K.R.1
Crüsemann, M.2
Lechner, A.3
Sarkar, A.4
Li, J.5
Ziemert, N.6
Wang, M.7
Bandeira, N.8
Moore, B.S.9
Dorrestein, P.C.10
Jensen, P.R.11
-
19
-
-
85047289483
-
Development of the CRISPR/Cas9 system for targeted gene disruption in Aspergillus fumigatus
-
Fuller K.K., Chen S., Loros J.J., Dunlap J.C. Development of the CRISPR/Cas9 system for targeted gene disruption in Aspergillus fumigatus. Eukaryot. Cell 2015, 14:1073-1080. 10.1128/EC.00107-15.
-
(2015)
Eukaryot. Cell
, vol.14
, pp. 1073-1080
-
-
Fuller, K.K.1
Chen, S.2
Loros, J.J.3
Dunlap, J.C.4
-
20
-
-
84900826142
-
Variability of chromosome structure in pathogenic fungi-of "ends and odds"
-
Galazka J.M., Freitag M. Variability of chromosome structure in pathogenic fungi-of "ends and odds". Curr. Opin. Microbiol. 2014, 20:19-26. 10.1016/j.mib.2014.04.002.
-
(2014)
Curr. Opin. Microbiol.
, vol.20
, pp. 19-26
-
-
Galazka, J.M.1
Freitag, M.2
-
21
-
-
79955772476
-
A stereoselective hydroxylation step of alkaloid biosynthesis by a unique cytochrome P450 in Catharanthus roseus
-
Giddings L.-A., Liscombe D.K., Hamilton J.P., Childs K.L., DellaPenna D., Buell C.R., O'Connor S.E. A stereoselective hydroxylation step of alkaloid biosynthesis by a unique cytochrome P450 in Catharanthus roseus. J. Biol. Chem. 2011, 286:16751-16757. 10.1074/jbc.M111.225383.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 16751-16757
-
-
Giddings, L.-A.1
Liscombe, D.K.2
Hamilton, J.P.3
Childs, K.L.4
DellaPenna, D.5
Buell, C.R.6
O'Connor, S.E.7
-
22
-
-
84903172568
-
Natural product proteomining, a quantitative proteomics platform, allows rapid discovery of biosynthetic gene clusters for different classes of natural products
-
Gubbens J., Zhu H., Girard G., Song L., Florea B.I., Aston P., Ichinose K., Filippov D.V., Choi Y.H., Overkleeft H.S., Challis G.L., van Wezel G.P. Natural product proteomining, a quantitative proteomics platform, allows rapid discovery of biosynthetic gene clusters for different classes of natural products. Chem. Biol. 2014, 21:707-718. 10.1016/j.chembiol.2014.03.011.
-
(2014)
Chem. Biol.
, vol.21
, pp. 707-718
-
-
Gubbens, J.1
Zhu, H.2
Girard, G.3
Song, L.4
Florea, B.I.5
Aston, P.6
Ichinose, K.7
Filippov, D.V.8
Choi, Y.H.9
Overkleeft, H.S.10
Challis, G.L.11
van Wezel, G.P.12
-
23
-
-
77955148530
-
First heterologous reconstruction of a complete functional fungal biosynthetic multigene cluster
-
Heneghan M.N., Yakasai A.A., Halo L.M., Song Z., Bailey A.M., Simpson T.J., Cox R.J., Lazarus C.M. First heterologous reconstruction of a complete functional fungal biosynthetic multigene cluster. ChemBioChem 2010, 11:1508-1512. 10.1002/cbic.201000259.
-
(2010)
ChemBioChem
, vol.11
, pp. 1508-1512
-
-
Heneghan, M.N.1
Yakasai, A.A.2
Halo, L.M.3
Song, Z.4
Bailey, A.M.5
Simpson, T.J.6
Cox, R.J.7
Lazarus, C.M.8
-
24
-
-
84903744161
-
EBR1 genomic expansion and its role in virulence of Fusarium species
-
Jonkers W., Xayamongkhon H., Haas M., Olivain C., van der Does H.C., Broz K., Rep M., Alabouvette C., Steinberg C., Kistler H.C. EBR1 genomic expansion and its role in virulence of Fusarium species. Environ. Microbiol. 2014, 16:1982-2003. 10.1111/1462-2920.12331.
-
(2014)
Environ. Microbiol.
, vol.16
, pp. 1982-2003
-
-
Jonkers, W.1
Xayamongkhon, H.2
Haas, M.3
Olivain, C.4
van der Does, H.C.5
Broz, K.6
Rep, M.7
Alabouvette, C.8
Steinberg, C.9
Kistler, H.C.10
-
25
-
-
30544434099
-
Fungal secondary metabolism - from biochemistry to genomics
-
Keller N.P., Turner G., Bennett J.W. Fungal secondary metabolism - from biochemistry to genomics. Nat. Rev. Microbiol. 2005, 3:937-947. 10.1038/nrmicro1286.
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 937-947
-
-
Keller, N.P.1
Turner, G.2
Bennett, J.W.3
-
26
-
-
77955274600
-
SMURF: Genomic mapping of fungal secondary metabolite clusters
-
Khaldi N., Seifuddin F.T., Turner G., Haft D., Nierman W.C., Wolfe K.H., Fedorova N.D. SMURF: Genomic mapping of fungal secondary metabolite clusters. Fungal Genet. Biol. 2010, 47:736-741.
-
(2010)
Fungal Genet. Biol.
, vol.47
, pp. 736-741
-
-
Khaldi, N.1
Seifuddin, F.T.2
Turner, G.3
Haft, D.4
Nierman, W.C.5
Wolfe, K.H.6
Fedorova, N.D.7
-
27
-
-
84942442755
-
Six enzymes from mayapple that complete the biosynthetic pathway to the etoposide aglycone
-
Lau W., Sattely E.S. Six enzymes from mayapple that complete the biosynthetic pathway to the etoposide aglycone. Science 2015, 349:1224-1228. 10.1126/science.aac7202.
-
(2015)
Science
, vol.349
, pp. 1224-1228
-
-
Lau, W.1
Sattely, E.S.2
-
28
-
-
84907144112
-
Reconstructing fungal natural product biosynthetic pathways
-
Lazarus C.M., Williams K., Bailey A.M. Reconstructing fungal natural product biosynthetic pathways. Nat. Prod. Rep. 2014, 31:1339-1347. 10.1039/c4np00084f.
-
(2014)
Nat. Prod. Rep.
, vol.31
, pp. 1339-1347
-
-
Lazarus, C.M.1
Williams, K.2
Bailey, A.M.3
-
29
-
-
84904001533
-
Expansion of biological pathways based on evolutionary inference
-
Li Y., Calvo S.E., Gutman R., Liu J.S., Mootha V.K. Expansion of biological pathways based on evolutionary inference. Cell 2014, 158:213-225. 10.1016/j.cell.2014.05.034.
-
(2014)
Cell
, vol.158
, pp. 213-225
-
-
Li, Y.1
Calvo, S.E.2
Gutman, R.3
Liu, J.S.4
Mootha, V.K.5
-
30
-
-
84960075421
-
Complete curation of fungal gene clusters encoding experimentally verified natural products
-
Li Y.F., Tsai K.J.S., Harvey C.J.B., Ary B.E., Berlew E.E., Boehman B.L., Findley D.M., Friant A.G., Gardner C.A., Gould M.P., Ha J.H., Lilley B.K., McKinstry E.L., Nawal S., Parry R.C., Rothchild K.W., Silbert S.D., Tentilucci M.D., Thurston A.M., Wai R.B., Yoon Y., Medema M.H., Hillenmeyer M.E., Charkoudian L.K. Complete curation of fungal gene clusters encoding experimentally verified natural products. Fungal Genet. Biol. 2016, 89:18-28. http://dx.doi.org/j.fgb.2016.01.012.
-
(2016)
Fungal Genet. Biol.
, vol.89
, pp. 18-28
-
-
Li, Y.F.1
Tsai, K.J.S.2
Harvey, C.J.B.3
Ary, B.E.4
Berlew, E.E.5
Boehman, B.L.6
Findley, D.M.7
Friant, A.G.8
Gardner, C.A.9
Gould, M.P.10
Ha, J.H.11
Lilley, B.K.12
McKinstry, E.L.13
Nawal, S.14
Parry, R.C.15
Rothchild, K.W.16
Silbert, S.D.17
Tentilucci, M.D.18
Thurston, A.M.19
Wai, R.B.20
Yoon, Y.21
Medema, M.H.22
Hillenmeyer, M.E.23
Charkoudian, L.K.24
more..
-
31
-
-
84896929356
-
Rational domain swaps reveal insights about chain length control by ketosynthase domains in fungal nonreducing polyketide synthases
-
Liu T., Sanchez J.F., Chiang Y.-M., Oakley B.R., Wang C.C.C. Rational domain swaps reveal insights about chain length control by ketosynthase domains in fungal nonreducing polyketide synthases. Org. Lett. 2014, 16:1676-1679. 10.1021/ol5003384.
-
(2014)
Org. Lett.
, vol.16
, pp. 1676-1679
-
-
Liu, T.1
Sanchez, J.F.2
Chiang, Y.-M.3
Oakley, B.R.4
Wang, C.C.C.5
-
32
-
-
32044471897
-
Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits
-
Lutzoni F., Kauff F., Cox C.J., McLaughlin D., Celio G., Dentinger B., Padamsee M., Hibbett D., James T.Y., Baloch E., Grube M., Reeb V., Hofstetter V., Schoch C., Arnold A.E., Miadlikowska J., Spatafora J., Johnson D., Hambleton S., Crockett M., Shoemaker R., Sung G.-H., Lucking R., Lumbsch T., O'Donnell K., Binder M., Diederich P., Ertz D., Gueidan C., Hansen K., Harris R.C., Hosaka K., Lim Y.-W., Matheny B., Nishida H., Pfister D., Rogers J., Rossman A., Schmitt I., Sipman H., Stone J., Sugiyama J., Yahr R., Vilgalys R. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. Am. J. Bot. 2004, 91:1446-1480. 10.3732/ajb.91.10.1446.
-
(2004)
Am. J. Bot.
, vol.91
, pp. 1446-1480
-
-
Lutzoni, F.1
Kauff, F.2
Cox, C.J.3
McLaughlin, D.4
Celio, G.5
Dentinger, B.6
Padamsee, M.7
Hibbett, D.8
James, T.Y.9
Baloch, E.10
Grube, M.11
Reeb, V.12
Hofstetter, V.13
Schoch, C.14
Arnold, A.E.15
Miadlikowska, J.16
Spatafora, J.17
Johnson, D.18
Hambleton, S.19
Crockett, M.20
Shoemaker, R.21
Sung, G.-H.22
Lucking, R.23
Lumbsch, T.24
O'Donnell, K.25
Binder, M.26
Diederich, P.27
Ertz, D.28
Gueidan, C.29
Hansen, K.30
Harris, R.C.31
Hosaka, K.32
Lim, Y.-W.33
Matheny, B.34
Nishida, H.35
Pfister, D.36
Rogers, J.37
Rossman, A.38
Schmitt, I.39
Sipman, H.40
Stone, J.41
Sugiyama, J.42
Yahr, R.43
Vilgalys, R.44
more..
-
33
-
-
29244442741
-
Genome sequencing and analysis of Aspergillus oryzae
-
Machida M., Asai K., Sano M., Tanaka T., Kumagai T., Terai G., Kusumoto K.-I., Arima T., Akita O., Kashiwagi Y. Genome sequencing and analysis of Aspergillus oryzae. Nature 2005, 438:1157-1161.
-
(2005)
Nature
, vol.438
, pp. 1157-1161
-
-
Machida, M.1
Asai, K.2
Sano, M.3
Tanaka, T.4
Kumagai, T.5
Terai, G.6
Kusumoto, K.-I.7
Arima, T.8
Akita, O.9
Kashiwagi, Y.10
-
34
-
-
84938836541
-
Synthetic biology of fungal natural products
-
Mattern D.J., Valiante V., Unkles S.E., Brakhage A.A. Synthetic biology of fungal natural products. Front. Microbiol. 2015, 6:775. 10.3389/fmicb.2015.00775.
-
(2015)
Front. Microbiol.
, vol.6
, pp. 775
-
-
Mattern, D.J.1
Valiante, V.2
Unkles, S.E.3
Brakhage, A.A.4
-
35
-
-
79959920872
-
AntiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
-
Medema M.H., Blin K., Cimermancic P., de Jager V., Zakrzewski P., Fischbach M.A., Weber T., Takano E., Breitling R. AntiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acids Res. 2011, 39:W339-W346. 10.1093/nar/gkr466; 10.1093/nar/gkr466.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. W339-W346
-
-
Medema, M.H.1
Blin, K.2
Cimermancic, P.3
de Jager, V.4
Zakrzewski, P.5
Fischbach, M.A.6
Weber, T.7
Takano, E.8
Breitling, R.9
-
36
-
-
78651517511
-
Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms
-
Medema M.H., Breitling R., Bovenberg R., Takano E. Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms. Nat. Rev. 2011, 9:131-137. 10.1038/nrmicro2478.
-
(2011)
Nat. Rev.
, vol.9
, pp. 131-137
-
-
Medema, M.H.1
Breitling, R.2
Bovenberg, R.3
Takano, E.4
-
37
-
-
84939536885
-
Computational approaches to natural product discovery
-
Medema M.H., Fischbach M.A. Computational approaches to natural product discovery. Nat. Chem. Biol. 2015, 11:639-648. 10.1038/nchembio.1884.
-
(2015)
Nat. Chem. Biol.
, vol.11
, pp. 639-648
-
-
Medema, M.H.1
Fischbach, M.A.2
-
38
-
-
84939557642
-
Minimum Information about a Biosynthetic Gene cluster
-
Medema M.H., Kottmann R., Yilmaz P., Cummings M., Biggins J.B., Blin K., de Bruijn I., Chooi Y.H., Claesen J., Coates R.C., Cruz-Morales P., Duddela S., Düsterhus S., Edwards D.J., Fewer D.P., Garg N., Geiger C., Gomez-Escribano J.P., Greule A., Hadjithomas M., Haines A.S., Helfrich E.J.N., Hillwig M.L., Ishida K., Jones A.C., Jones C.S., Jungmann K., Kegler C., Kim H.U., Kötter P., Krug D., Masschelein J., Melnik A.V., Mantovani S.M., Monroe E.A., Moore M., Moss N., Nützmann H.-W., Pan G., Pati A., Petras D., Reen F.J., Rosconi F., Rui Z., Tian Z., Tobias N.J., Tsunematsu Y., Wiemann P., Wyckoff E., Yan X., Yim G., Yu F., Xie Y., Aigle B., Apel A.K., Balibar C.J., Balskus E.P., Barona-Gómez F., Bechthold A., Bode H.B., Borriss R., Brady S.F., Brakhage A.A., Caffrey P., Cheng Y.-Q., Clardy J., Cox R.J., De Mot R., Donadio S., Donia M.S., van der Donk W.A., Dorrestein P.C., Doyle S., Driessen A.J.M., Ehling-Schulz M., Entian K.-D., Fischbach M.A., Gerwick L., Gerwick W.H., Gross H., Gust B., Hertweck C., Höfte M., Jensen S.E., Ju J., Katz L., Kaysser L., Klassen J.L., Keller N.P., Kormanec J., Kuipers O.P., Kuzuyama T., Kyrpides N.C., Kwon H.-J., Lautru S., Lavigne R., Lee C.Y., Linquan B., Liu X., Liu W., Luzhetskyy A., Mahmud T., Mast Y., Méndez C., Metsä-Ketelä M., Micklefield J., Mitchell D.A., Moore B.S., Moreira L.M., Müller R., Neilan B.A., Nett M., Nielsen J., O'Gara F., Oikawa H., Osbourn A., Osburne M.S., Ostash B., Payne S.M., Pernodet J.-L., Petricek M., Piel J., Ploux O., Raaijmakers J.M., Salas J.A., Schmitt E.K., Scott B., Seipke R.F., Shen B., Sherman D.H., Sivonen K., Smanski M.J., Sosio M., Stegmann E., Süssmuth R.D., Tahlan K., Thomas C.M., Tang Y., Truman A.W., Viaud M., Walton J.D., Walsh C.T., Weber T., van Wezel G.P., Wilkinson B., Willey J.M., Wohlleben W., Wright G.D., Ziemert N., Zhang C., Zotchev S.B., Breitling R., Takano E., Glöckner F.O. Minimum Information about a Biosynthetic Gene cluster. Nat. Chem. Biol. 2015, 11:625-631. 10.1038/nchembio.1890.
-
(2015)
Nat. Chem. Biol.
, vol.11
, pp. 625-631
-
-
Medema, M.H.1
Kottmann, R.2
Yilmaz, P.3
Cummings, M.4
Biggins, J.B.5
Blin, K.6
de Bruijn, I.7
Chooi, Y.H.8
Claesen, J.9
Coates, R.C.10
Cruz-Morales, P.11
Duddela, S.12
Düsterhus, S.13
Edwards, D.J.14
Fewer, D.P.15
Garg, N.16
Geiger, C.17
Gomez-Escribano, J.P.18
Greule, A.19
Hadjithomas, M.20
Haines, A.S.21
Helfrich, E.J.N.22
Hillwig, M.L.23
Ishida, K.24
Jones, A.C.25
Jones, C.S.26
Jungmann, K.27
Kegler, C.28
Kim, H.U.29
Kötter, P.30
Krug, D.31
Masschelein, J.32
Melnik, A.V.33
Mantovani, S.M.34
Monroe, E.A.35
Moore, M.36
Moss, N.37
Nützmann, H.-W.38
Pan, G.39
Pati, A.40
Petras, D.41
Reen, F.J.42
Rosconi, F.43
Rui, Z.44
Tian, Z.45
Tobias, N.J.46
Tsunematsu, Y.47
Wiemann, P.48
Wyckoff, E.49
Yan, X.50
Yim, G.51
Yu, F.52
Xie, Y.53
Aigle, B.54
Apel, A.K.55
Balibar, C.J.56
Balskus, E.P.57
Barona-Gómez, F.58
Bechthold, A.59
Bode, H.B.60
Borriss, R.61
Brady, S.F.62
Brakhage, A.A.63
Caffrey, P.64
Cheng, Y.-Q.65
Clardy, J.66
Cox, R.J.67
De Mot, R.68
Donadio, S.69
Donia, M.S.70
van der Donk, W.A.71
Dorrestein, P.C.72
Doyle, S.73
Driessen, A.J.M.74
Ehling-Schulz, M.75
Entian, K.-D.76
Fischbach, M.A.77
Gerwick, L.78
Gerwick, W.H.79
Gross, H.80
Gust, B.81
Hertweck, C.82
Höfte, M.83
Jensen, S.E.84
Ju, J.85
Katz, L.86
Kaysser, L.87
Klassen, J.L.88
Keller, N.P.89
Kormanec, J.90
Kuipers, O.P.91
Kuzuyama, T.92
Kyrpides, N.C.93
Kwon, H.-J.94
Lautru, S.95
Lavigne, R.96
Lee, C.Y.97
Linquan, B.98
Liu, X.99
more..
-
39
-
-
84876587454
-
Detecting sequence homology at the gene cluster level with MultiGeneBlast
-
Medema M.H., Takano E., Breitling R. Detecting sequence homology at the gene cluster level with MultiGeneBlast. Mol. Biol. Evol. 2013, 30:1218-1223. 10.1093/molbev/mst025.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 1218-1223
-
-
Medema, M.H.1
Takano, E.2
Breitling, R.3
-
40
-
-
84857192122
-
Computational tools for the synthetic design of biochemical pathways
-
Medema M.H., van Raaphorst R., Takano E., Breitling R. Computational tools for the synthetic design of biochemical pathways. Nat. Rev. 2012, 10:191-202. 10.1038/nrmicro2717.
-
(2012)
Nat. Rev.
, vol.10
, pp. 191-202
-
-
Medema, M.H.1
van Raaphorst, R.2
Takano, E.3
Breitling, R.4
-
41
-
-
84950279555
-
Class of cyclic ribosomal peptide synthetic genes in filamentous fungi
-
Nagano N., Umemura M., Izumikawa M., Kawano J., Ishii T., Kikuchi M., Tomii K., Kumagai T., Yoshimi A., Machida M., Abe K., Shin-ya K., Asai K. Class of cyclic ribosomal peptide synthetic genes in filamentous fungi. Fungal Genet. Biol. 2016, 86:58-70. 10.1016/j.fgb.2015.12.010.
-
(2016)
Fungal Genet. Biol.
, vol.86
, pp. 58-70
-
-
Nagano, N.1
Umemura, M.2
Izumikawa, M.3
Kawano, J.4
Ishii, T.5
Kikuchi, M.6
Tomii, K.7
Kumagai, T.8
Yoshimi, A.9
Machida, M.10
Abe, K.11
Shin-ya, K.12
Asai, K.13
-
42
-
-
84940524988
-
A CRISPR-Cas9 System for genetic engineering of filamentous fungi
-
Nødvig C.S., Nielsen J.B., Kogle M.E., Mortensen U.H. A CRISPR-Cas9 System for genetic engineering of filamentous fungi. PLoS ONE 2015, 10:e0133085. 10.1371/journal.pone.0133085.
-
(2015)
PLoS ONE
, vol.10
, pp. e0133085
-
-
Nødvig, C.S.1
Nielsen, J.B.2
Kogle, M.E.3
Mortensen, U.H.4
-
43
-
-
80052154073
-
Bacteria-induced natural product formation in the fungus Aspergillus nidulans requires Saga/Ada-mediated histone acetylation
-
Nützmann H.W., Reyes-Dominguez Y., Scherlach K., Schroeckh V., Horn F., Gacek A., Schümann J., Hertweck C., Strauss J., Brakhage A.A. Bacteria-induced natural product formation in the fungus Aspergillus nidulans requires Saga/Ada-mediated histone acetylation. Proc. Natl. Acad. Sci. U.S.A. 2011, 108:14282-14287. 10.1073/pnas.1103523108/-/DCSupplemental.www.pnas.org/cgi/doi/10.1073/pnas.1103523108.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 14282-14287
-
-
Nützmann, H.W.1
Reyes-Dominguez, Y.2
Scherlach, K.3
Schroeckh, V.4
Horn, F.5
Gacek, A.6
Schümann, J.7
Hertweck, C.8
Strauss, J.9
Brakhage, A.A.10
-
44
-
-
84873498382
-
Secondary metabolism and development is mediated by LlmF control of VeA subcellular localization in Aspergillus nidulans
-
Palmer J.M., Theisen J.M., Duran R.M., Grayburn W.S., Calvo A.M., Keller N.P. Secondary metabolism and development is mediated by LlmF control of VeA subcellular localization in Aspergillus nidulans. PLoS Genet. 2013, 9:e1003193. 10.1371/journal.pgen.1003193.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003193
-
-
Palmer, J.M.1
Theisen, J.M.2
Duran, R.M.3
Grayburn, W.S.4
Calvo, A.M.5
Keller, N.P.6
-
45
-
-
79959424209
-
Metabolic engineering for the production of natural products
-
Pickens L.B., Tang Y., Chooi Y.H. Metabolic engineering for the production of natural products. Annu. Rev. Chem. Biomol. Eng. 2011, 2:211-236. 10.1146/annurev-chembioeng-061010-114209.
-
(2011)
Annu. Rev. Chem. Biomol. Eng.
, vol.2
, pp. 211-236
-
-
Pickens, L.B.1
Tang, Y.2
Chooi, Y.H.3
-
46
-
-
84869862664
-
A retrosynthetic biology approach to therapeutics: from conception to delivery
-
Planson A.-G., Carbonell P., Grigoras I., Faulon J.-L. A retrosynthetic biology approach to therapeutics: from conception to delivery. Curr. Opin. Biotechnol. 2012, 23:948-956. 10.1016/j.copbio.2012.03.009.
-
(2012)
Curr. Opin. Biotechnol.
, vol.23
, pp. 948-956
-
-
Planson, A.-G.1
Carbonell, P.2
Grigoras, I.3
Faulon, J.-L.4
-
47
-
-
70450198122
-
Evidence that a secondary metabolic biosynthetic gene cluster has grown by gene relocation during evolution of the filamentous fungus Fusarium
-
Proctor R.H., McCormick S.P., Alexander N.J., Desjardins A.E. Evidence that a secondary metabolic biosynthetic gene cluster has grown by gene relocation during evolution of the filamentous fungus Fusarium. Mol. Microbiol. 2009, 74:1128-1142. 10.1111/j.1365-2958.2009.06927.x.
-
(2009)
Mol. Microbiol.
, vol.74
, pp. 1128-1142
-
-
Proctor, R.H.1
McCormick, S.P.2
Alexander, N.J.3
Desjardins, A.E.4
-
48
-
-
84885390419
-
Birth, death and horizontal transfer of the fumonisin biosynthetic gene cluster during the evolutionary diversification of Fusarium
-
Proctor R.H., Van Hove F., Susca A., Stea G., Busman M., van der Lee T., Waalwijk C., Moretti A., Ward T.J. Birth, death and horizontal transfer of the fumonisin biosynthetic gene cluster during the evolutionary diversification of Fusarium. Mol. Microbiol. 2013, 90:290-306. 10.1111/mmi.12362.
-
(2013)
Mol. Microbiol.
, vol.90
, pp. 290-306
-
-
Proctor, R.H.1
Van Hove, F.2
Susca, A.3
Stea, G.4
Busman, M.5
van der Lee, T.6
Waalwijk, C.7
Moretti, A.8
Ward, T.J.9
-
49
-
-
84942068153
-
A new cyanogenic metabolite in Arabidopsis required for inducible pathogen defence
-
Rajniak J., Barco B., Clay N.K., Sattely E.S. A new cyanogenic metabolite in Arabidopsis required for inducible pathogen defence. Nature 2015, 525:376-379. 10.1038/nature14907.
-
(2015)
Nature
, vol.525
, pp. 376-379
-
-
Rajniak, J.1
Barco, B.2
Clay, N.K.3
Sattely, E.S.4
-
50
-
-
84937253653
-
Discovery of microbial natural products by activation of silent biosynthetic gene clusters
-
Rutledge P.J., Challis G.L. Discovery of microbial natural products by activation of silent biosynthetic gene clusters. Nat. Rev. Microbiol. 2015, 13:509-523. 10.1038/nrmicro3496.
-
(2015)
Nat. Rev. Microbiol.
, vol.13
, pp. 509-523
-
-
Rutledge, P.J.1
Challis, G.L.2
-
51
-
-
84874772540
-
Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the Clavicipitaceae reveals dynamics of alkaloid loci
-
Schardl C.L., Young C.A., Hesse U., Amyotte S.G., Andreeva K., Calie P.J., Fleetwood D.J., Haws D.C., Moore N., Oeser B., Panaccione D.G., Schweri K.K., Voisey C.R., Farman M.L., Jaromczyk J.W., Roe B.A., O'Sullivan D.M., Scott B., Tudzynski P., An Z., Arnaoudova E.G., Bullock C.T., Charlton N.D., Chen L., Cox M., Dinkins R.D., Florea S., Glenn A.E., Gordon A., Güldener U., Harris D.R., Hollin W., Jaromczyk J., Johnson R.D., Khan A.K., Leistner E., Leuchtmann A., Li C., Liu J., Liu J., Liu M., Mace W., Machado C., Nagabhyru P., Pan J., Schmid J., Sugawara K., Steiner U., Takach J.E., Tanaka E., Webb J.S., Wilson E.V., Wiseman J.L., Yoshida R., Zeng Z. Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the Clavicipitaceae reveals dynamics of alkaloid loci. PLoS Genet. 2013, 9:e1003323. 10.1371/journal.pgen.1003323.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003323
-
-
Schardl, C.L.1
Young, C.A.2
Hesse, U.3
Amyotte, S.G.4
Andreeva, K.5
Calie, P.J.6
Fleetwood, D.J.7
Haws, D.C.8
Moore, N.9
Oeser, B.10
Panaccione, D.G.11
Schweri, K.K.12
Voisey, C.R.13
Farman, M.L.14
Jaromczyk, J.W.15
Roe, B.A.16
O'Sullivan, D.M.17
Scott, B.18
Tudzynski, P.19
An, Z.20
Arnaoudova, E.G.21
Bullock, C.T.22
Charlton, N.D.23
Chen, L.24
Cox, M.25
Dinkins, R.D.26
Florea, S.27
Glenn, A.E.28
Gordon, A.29
Güldener, U.30
Harris, D.R.31
Hollin, W.32
Jaromczyk, J.33
Johnson, R.D.34
Khan, A.K.35
Leistner, E.36
Leuchtmann, A.37
Li, C.38
Liu, J.39
Liu, J.40
Liu, M.41
Mace, W.42
Machado, C.43
Nagabhyru, P.44
Pan, J.45
Schmid, J.46
Sugawara, K.47
Steiner, U.48
Takach, J.E.49
Tanaka, E.50
Webb, J.S.51
Wilson, E.V.52
Wiseman, J.L.53
Yoshida, R.54
Zeng, Z.55
more..
-
52
-
-
84872175341
-
Engineering fungal secondary metabolism: a roadmap to novel compounds
-
Scharf D.H., Brakhage A.A. Engineering fungal secondary metabolism: a roadmap to novel compounds. J. Biotechnol. 2013, 163:179-183. 10.1016/j.jbiotec.2012.06.027.
-
(2013)
J. Biotechnol.
, vol.163
, pp. 179-183
-
-
Scharf, D.H.1
Brakhage, A.A.2
-
53
-
-
84887870749
-
Refactoring the silent spectinabilin gene cluster using a plug-and-play scaffold
-
Shao Z., Rao G., Li C., Abil Z., Luo Y., Zhao H. Refactoring the silent spectinabilin gene cluster using a plug-and-play scaffold. ACS Synth. Biol. 2013, 2:662-669. 10.1021/sb400058n.
-
(2013)
ACS Synth. Biol.
, vol.2
, pp. 662-669
-
-
Shao, Z.1
Rao, G.2
Li, C.3
Abil, Z.4
Luo, Y.5
Zhao, H.6
-
54
-
-
84921517479
-
Functional optimization of gene clusters by combinatorial design and assembly
-
Smanski M.J., Bhatia S., Zhao D., Park Y., Woodruff L., Giannoukos G., Ciulla D., Busby M., Calderon J., Nicol R., Gordon D.B., Densmore D., Voigt C.A. Functional optimization of gene clusters by combinatorial design and assembly. Nat. Biotechnol. 2014, 32:1241-1249. 10.1038/nbt.3063.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 1241-1249
-
-
Smanski, M.J.1
Bhatia, S.2
Zhao, D.3
Park, Y.4
Woodruff, L.5
Giannoukos, G.6
Ciulla, D.7
Busby, M.8
Calderon, J.9
Nicol, R.10
Gordon, D.B.11
Densmore, D.12
Voigt, C.A.13
-
55
-
-
84908374997
-
Variation in the fumonisin biosynthetic gene cluster in fumonisin-producing and nonproducing black aspergilli
-
Susca A., Proctor R.H., Butchko R.A.E., Haidukowski M., Stea G., Logrieco A., Moretti A. Variation in the fumonisin biosynthetic gene cluster in fumonisin-producing and nonproducing black aspergilli. Fungal Genet. Biol. 2014, 73:39-52. 10.1016/j.fgb.2014.09.009.
-
(2014)
Fungal Genet. Biol.
, vol.73
, pp. 39-52
-
-
Susca, A.1
Proctor, R.H.2
Butchko, R.A.E.3
Haidukowski, M.4
Stea, G.5
Logrieco, A.6
Moretti, A.7
-
56
-
-
84873821538
-
Reconstitution of biosynthetic machinery for indole-diterpene paxilline in Aspergillus oryzae
-
Tagami K., Liu C., Minami A., Noike M., Isaka T., Fueki S., Shichijo Y., Toshima H., Gomi K., Dairi T., Oikawa H. Reconstitution of biosynthetic machinery for indole-diterpene paxilline in Aspergillus oryzae. J. Am. Chem. Soc. 2013, 135:1260-1263. 10.1021/ja3116636.
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 1260-1263
-
-
Tagami, K.1
Liu, C.2
Minami, A.3
Noike, M.4
Isaka, T.5
Fueki, S.6
Shichijo, Y.7
Toshima, H.8
Gomi, K.9
Dairi, T.10
Oikawa, H.11
-
57
-
-
84906983992
-
Motif-independent prediction of a secondary metabolism gene cluster using comparative genomics: application to sequenced genomes of Aspergillus and ten other filamentous fungal species
-
Takeda I., Umemura M., Koike H., Asai K., Machida M. Motif-independent prediction of a secondary metabolism gene cluster using comparative genomics: application to sequenced genomes of Aspergillus and ten other filamentous fungal species. DNA Res. 2014, 21:447-457. 10.1093/dnares/dsu010.
-
(2014)
DNA Res.
, vol.21
, pp. 447-457
-
-
Takeda, I.1
Umemura, M.2
Koike, H.3
Asai, K.4
Machida, M.5
-
58
-
-
84914142313
-
Fungal biogeography. Global diversity and geography of soil fungi
-
Tedersoo L., Bahram M., Põlme S., Kõljalg U., Yorou N.S., Wijesundera R., Villarreal Ruiz L., Vasco-Palacios A.M., Thu P.Q., Suija A., Smith M.E., Sharp C., Saluveer E., Saitta A., Rosas M., Riit T., Ratkowsky D., Pritsch K., Põldmaa K., Piepenbring M., Phosri C., Peterson M., Parts K., Pärtel K., Otsing E., Nouhra E., Njouonkou A.L., Nilsson R.H., Morgado L.N., Mayor J., May T.W., Majuakim L., Lodge D.J., Lee S.S., Larsson K.-H., Kohout P., Hosaka K., Hiiesalu I., Henkel T.W., Harend H., Guo L., Greslebin A., Grelet G., Geml J., Gates G., Dunstan W., Dunk C., Drenkhan R., Dearnaley J., De Kesel A., Dang T., Chen X., Buegger F., Brearley F.Q., Bonito G., Anslan S., Abell S., Abarenkov K. Fungal biogeography. Global diversity and geography of soil fungi. Science 2014, 346:1256688. 10.1126/science.1256688.
-
(2014)
Science
, vol.346
, pp. 1256688
-
-
Tedersoo, L.1
Bahram, M.2
Põlme, S.3
Kõljalg, U.4
Yorou, N.S.5
Wijesundera, R.6
Villarreal Ruiz, L.7
Vasco-Palacios, A.M.8
Thu, P.Q.9
Suija, A.10
Smith, M.E.11
Sharp, C.12
Saluveer, E.13
Saitta, A.14
Rosas, M.15
Riit, T.16
Ratkowsky, D.17
Pritsch, K.18
Põldmaa, K.19
Piepenbring, M.20
Phosri, C.21
Peterson, M.22
Parts, K.23
Pärtel, K.24
Otsing, E.25
Nouhra, E.26
Njouonkou, A.L.27
Nilsson, R.H.28
Morgado, L.N.29
Mayor, J.30
May, T.W.31
Majuakim, L.32
Lodge, D.J.33
Lee, S.S.34
Larsson, K.-H.35
Kohout, P.36
Hosaka, K.37
Hiiesalu, I.38
Henkel, T.W.39
Harend, H.40
Guo, L.41
Greslebin, A.42
Grelet, G.43
Geml, J.44
Gates, G.45
Dunstan, W.46
Dunk, C.47
Drenkhan, R.48
Dearnaley, J.49
De Kesel, A.50
Dang, T.51
Chen, X.52
Buegger, F.53
Brearley, F.Q.54
Bonito, G.55
Anslan, S.56
Abell, S.57
Abarenkov, K.58
more..
-
59
-
-
78449259379
-
Identification and characterization of genes responsible for biosynthesis of kojic acid, an industrially important compound from Aspergillus oryzae
-
Terabayashi Y., Sano M., Yamane N., Marui J., Tamano K., Sagara J., Dohmoto M., Oda K., Ohshima E., Tachibana K., Higa Y., Ohashi S., Koike H., Machida M. Identification and characterization of genes responsible for biosynthesis of kojic acid, an industrially important compound from Aspergillus oryzae. Fungal Genet. Biol. 2010, 47:953-961. 10.1016/j.fgb.2010.08.014.
-
(2010)
Fungal Genet. Biol.
, vol.47
, pp. 953-961
-
-
Terabayashi, Y.1
Sano, M.2
Yamane, N.3
Marui, J.4
Tamano, K.5
Sagara, J.6
Dohmoto, M.7
Oda, K.8
Ohshima, E.9
Tachibana, K.10
Higa, Y.11
Ohashi, S.12
Koike, H.13
Machida, M.14
-
60
-
-
84929144243
-
Ustiloxins, fungal cyclic peptides, are ribosomally synthesized in Ustilaginoidea virens
-
Tsukui T., Nagano N., Umemura M., Kumagai T., Terai G., Machida M., Asai K. Ustiloxins, fungal cyclic peptides, are ribosomally synthesized in Ustilaginoidea virens. Bioinformatics 2015, 31:981-985. 10.1093/bioinformatics/btu753.
-
(2015)
Bioinformatics
, vol.31
, pp. 981-985
-
-
Tsukui, T.1
Nagano, N.2
Umemura, M.3
Kumagai, T.4
Terai, G.5
Machida, M.6
Asai, K.7
-
61
-
-
84931262348
-
Motif-independent de novo detection of secondary metabolite gene clusters-toward identification from filamentous fungi
-
Umemura M., Koike H., Machida M. Motif-independent de novo detection of secondary metabolite gene clusters-toward identification from filamentous fungi. Front. Microbiol. 2015, 6:371. 10.3389/fmicb.2015.00371.
-
(2015)
Front. Microbiol.
, vol.6
, pp. 371
-
-
Umemura, M.1
Koike, H.2
Machida, M.3
-
62
-
-
84894140502
-
MIDDAS-M: motif-independent de novo detection of secondary metabolite gene clusters through the Integration of genome sequencing and transcriptome data
-
Umemura M., Koike H., Nagano N., Ishii T., Kawano J., Yamane N., Kozone I., Horimoto K., Shin-ya K., Asai K., Yu J., Bennett J.W., Machida M. MIDDAS-M: motif-independent de novo detection of secondary metabolite gene clusters through the Integration of genome sequencing and transcriptome data. PLoS ONE 2013, 8:e84028. 10.1371/journal.pone.0084028.
-
(2013)
PLoS ONE
, vol.8
, pp. e84028
-
-
Umemura, M.1
Koike, H.2
Nagano, N.3
Ishii, T.4
Kawano, J.5
Yamane, N.6
Kozone, I.7
Horimoto, K.8
Shin-ya, K.9
Asai, K.10
Yu, J.11
Bennett, J.W.12
Machida, M.13
-
63
-
-
84902002754
-
Characterization of the biosynthetic gene cluster for the ribosomally synthesized cyclic peptide ustiloxin B in Aspergillus flavus
-
Umemura M., Nagano N., Koike H., Kawano J., Ishii T., Miyamura Y., Kikuchi M., Tamano K., Yu J., Shin-ya K., Machida M. Characterization of the biosynthetic gene cluster for the ribosomally synthesized cyclic peptide ustiloxin B in Aspergillus flavus. Fungal Genet. Biol. 2014, 68:23-30. 10.1016/j.fgb.2014.04.011.
-
(2014)
Fungal Genet. Biol.
, vol.68
, pp. 23-30
-
-
Umemura, M.1
Nagano, N.2
Koike, H.3
Kawano, J.4
Ishii, T.5
Miyamura, Y.6
Kikuchi, M.7
Tamano, K.8
Yu, J.9
Shin-ya, K.10
Machida, M.11
-
64
-
-
0033762670
-
Horizontal gene transfer and the evolution of secondary metabolite gene clusters in fungi: an hypothesis
-
Walton J.D. Horizontal gene transfer and the evolution of secondary metabolite gene clusters in fungi: an hypothesis. Fungal Genet. Biol. 2000, 30:167-171.
-
(2000)
Fungal Genet. Biol.
, vol.30
, pp. 167-171
-
-
Walton, J.D.1
-
65
-
-
0037047046
-
Ancestral polymorphism and adaptive evolution in the trichothecene mycotoxin gene cluster of phytopathogenic Fusarium
-
Ward T.J., Bielawski J.P., Kistler H.C., Sullivan E., O'Donnell K. Ancestral polymorphism and adaptive evolution in the trichothecene mycotoxin gene cluster of phytopathogenic Fusarium. Proc. Natl. Acad. Sci. USA 2002, 99:9278-9283. 10.1073/pnas.142307199.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 9278-9283
-
-
Ward, T.J.1
Bielawski, J.P.2
Kistler, H.C.3
Sullivan, E.4
O'Donnell, K.5
-
66
-
-
84979859096
-
AntiSMASH 3.0 - a comprehensive resource for the genome mining of biosynthetic gene clusters
-
Weber T., Blin K., Duddela S., Krug D., Kim H.U., Bruccoleri R., Lee S.Y., Fischbach M.A., Muller R., Wohlleben W., Breitling R., Takano E., Medema M.H. antiSMASH 3.0 - a comprehensive resource for the genome mining of biosynthetic gene clusters. Nucleic Acids Res. 2015, 43:W237-W243. 10.1093/nar/gkv437.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. W237-W243
-
-
Weber, T.1
Blin, K.2
Duddela, S.3
Krug, D.4
Kim, H.U.5
Bruccoleri, R.6
Lee, S.Y.7
Fischbach, M.A.8
Muller, R.9
Wohlleben, W.10
Breitling, R.11
Takano, E.12
Medema, M.H.13
-
67
-
-
77955379554
-
FfVel1 and FfLae1, components of a velvet-like complex in Fusarium fujikuroi, affect differentiation, secondary metabolism and virulence
-
Wiemann P., Brown D.W., Kleigrewe K., Bok J.W., Keller N.P., Humpf H.-U., Tudzynski B. FfVel1 and FfLae1, components of a velvet-like complex in Fusarium fujikuroi, affect differentiation, secondary metabolism and virulence. Mol. Microbiol. 2010, 77:972-994. 10.1111/j.1365-2958.2010.07263.x.
-
(2010)
Mol. Microbiol.
, vol.77
, pp. 972-994
-
-
Wiemann, P.1
Brown, D.W.2
Kleigrewe, K.3
Bok, J.W.4
Keller, N.P.5
Humpf, H.-U.6
Tudzynski, B.7
-
68
-
-
84895075667
-
Strategies for mining fungal natural products
-
Wiemann P., Keller N.P. Strategies for mining fungal natural products. J. Ind. Microbiol. Biotechnol. 2014, 41:301-313. 10.1007/s10295-013-1366-3.
-
(2014)
J. Ind. Microbiol. Biotechnol.
, vol.41
, pp. 301-313
-
-
Wiemann, P.1
Keller, N.P.2
-
69
-
-
84865515585
-
Synthetic biological approaches to natural product biosynthesis
-
Winter J.M., Tang Y. Synthetic biological approaches to natural product biosynthesis. Curr. Opin. Biotechnol. 2012, 23:736-743. 10.1016/j.copbio.2011.12.016.
-
(2012)
Curr. Opin. Biotechnol.
, vol.23
, pp. 736-743
-
-
Winter, J.M.1
Tang, Y.2
-
70
-
-
84927168286
-
Fungal metabolic gene clusters-caravans traveling across genomes and environments
-
Wisecaver J.H., Rokas A. Fungal metabolic gene clusters-caravans traveling across genomes and environments. Front. Microbiol. 2015, 6. 10.3389/fmicb.2015.00161.
-
(2015)
Front. Microbiol.
, vol.6
-
-
Wisecaver, J.H.1
Rokas, A.2
-
71
-
-
84966692174
-
CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes
-
Wolf T., Shelest V., Nath N., Shelest E. CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes. Bioinformatics 2015, 10.1093/bioinformatics/btv713.
-
(2015)
Bioinformatics
-
-
Wolf, T.1
Shelest, V.2
Nath, N.3
Shelest, E.4
-
72
-
-
84873941080
-
Engineering fungal nonreducing polyketide synthase by heterologous expression and domain swapping
-
Yeh H.-H., Chang S.-L., Chiang Y.-M., Bruno K.S., Oakley B.R., Wu T.-K., Wang C.C.C. Engineering fungal nonreducing polyketide synthase by heterologous expression and domain swapping. Org. Lett. 2013, 15:756-759. 10.1021/ol303328t.
-
(2013)
Org. Lett.
, vol.15
, pp. 756-759
-
-
Yeh, H.-H.1
Chang, S.-L.2
Chiang, Y.-M.3
Bruno, K.S.4
Oakley, B.R.5
Wu, T.-K.6
Wang, C.C.C.7
-
73
-
-
84950264293
-
Highly efficient CRISPR mutagenesis by microhomology-mediated end joining in Aspergillus fumigatus
-
Zhang C., Meng X., Wei X., Lu L. Highly efficient CRISPR mutagenesis by microhomology-mediated end joining in Aspergillus fumigatus. Fungal Genet. Biol. 2016, 86:47-57. 10.1016/j.fgb.2015.12.007.
-
(2016)
Fungal Genet. Biol.
, vol.86
, pp. 47-57
-
-
Zhang, C.1
Meng, X.2
Wei, X.3
Lu, L.4
-
74
-
-
84899071261
-
Relocation of genes generates non-conserved chromosomal segments in Fusarium graminearum that show distinct and co-regulated gene expression patterns
-
Zhao C., Waalwijk C., de Wit P.J.G.M., Tang D., van der Lee T. Relocation of genes generates non-conserved chromosomal segments in Fusarium graminearum that show distinct and co-regulated gene expression patterns. BMC Genom. 2014, 15:191. 10.1186/1471-2164-15-191.
-
(2014)
BMC Genom.
, vol.15
, pp. 191
-
-
Zhao, C.1
Waalwijk, C.2
de Wit, P.J.G.M.3
Tang, D.4
van der Lee, T.5
-
75
-
-
81255144863
-
EBR1, a novel Zn2Cys6 transcription factor, affects virulence and apical dominance of the hyphal tip in Fusarium graminearum
-
Zhao C., Waalwijk C., de Wit P.J.G.M., van der Lee T., Tang D. EBR1, a novel Zn2Cys6 transcription factor, affects virulence and apical dominance of the hyphal tip in Fusarium graminearum. Mol. Plant-Microbe Interact. 2011, 24:1407-1418. 10.1094/MPMI-06-11-0158.
-
(2011)
Mol. Plant-Microbe Interact.
, vol.24
, pp. 1407-1418
-
-
Zhao, C.1
Waalwijk, C.2
de Wit, P.J.G.M.3
van der Lee, T.4
Tang, D.5
-
76
-
-
79960720332
-
Induced production of N-formyl alkaloids from Aspergillus fumigatus by co-culture with Streptomyces peucetius
-
Zuck K.M., Shipley S., Newman D.J. Induced production of N-formyl alkaloids from Aspergillus fumigatus by co-culture with Streptomyces peucetius. J. Nat. Prod. 2011, 74:1653-1657. 10.1021/np200255f.
-
(2011)
J. Nat. Prod.
, vol.74
, pp. 1653-1657
-
-
Zuck, K.M.1
Shipley, S.2
Newman, D.J.3
-
77
-
-
84904640528
-
Fungi treated with small chemicals exhibit increased antimicrobial activity against facultative bacterial and yeast pathogens
-
Zutz C., Bandian D., Neumayer B., Speringer F., Gorfer M., Wagner M., Strauss J., Rychli K. Fungi treated with small chemicals exhibit increased antimicrobial activity against facultative bacterial and yeast pathogens. Biomed Res. Int. 2014, 2014:540292. 10.1155/2014/540292.
-
(2014)
Biomed Res. Int.
, vol.2014
, pp. 540292
-
-
Zutz, C.1
Bandian, D.2
Neumayer, B.3
Speringer, F.4
Gorfer, M.5
Wagner, M.6
Strauss, J.7
Rychli, K.8
|