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Volumn 32, Issue 8, 2016, Pages 1138-1143

CASSIS and SMIPS: Promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDE SYNTHASE; POLYKETIDE SYNTHASE;

EID: 84966692174     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv713     Document Type: Article
Times cited : (94)

References (20)
  • 1
    • 80051728363 scopus 로고    scopus 로고
    • Aspergillus flavus
    • VanAlfen N., et al.
    • Amaike, S., Keller, N.P. (2011) Aspergillus flavus. In: VanAlfen N., et al. (ed.) Annual Review of Phytopathology. Vol. 49, pp. 107-133.
    • (2011) Annual Review of Phytopathology , vol.49 , pp. 107-133
    • Amaike, S.1    Keller, N.P.2
  • 2
    • 84871997235 scopus 로고    scopus 로고
    • Accurate prediction of secondary metabolite gene clusters in filamentous fungi
    • Andersen, M.R. et al. (2013) Accurate prediction of secondary metabolite gene clusters in filamentous fungi. Proc. Natl Acad. Sci., 110, E99-E107.
    • (2013) Proc. Natl Acad. Sci. , vol.110 , pp. E99-E107
    • Andersen, M.R.1
  • 4
    • 67849122320 scopus 로고    scopus 로고
    • MEME Suite: Tools for motif discovery and searching
    • Bailey, T.L. et al. (2009) MEME Suite: tools for motif discovery and searching. Nucleic Acids Res., 37, W202-W208.
    • (2009) Nucleic Acids Res , vol.37 , pp. W202-W208
    • Bailey, T.L.1
  • 5
    • 78650356368 scopus 로고    scopus 로고
    • Activation of a silent fungal polyketide biosynthesis pathway through regulatory cross talk with a cryptic nonribosomal peptide synthetase gene cluster
    • Bergmann, S. et al. (2010) Activation of a silent fungal polyketide biosynthesis pathway through regulatory cross talk with a cryptic nonribosomal peptide synthetase gene cluster. Appl. Environ.Microbiol., 76, 8143-8149.
    • (2010) Appl. Environ.Microbiol. , vol.76 , pp. 8143-8149
    • Bergmann, S.1
  • 6
    • 84883353135 scopus 로고    scopus 로고
    • AntiSMASH 2.0 - A versatile platform for genome mining of secondary metabolite producers
    • Blin, K. et al. (2013) antiSMASH 2.0-a versatile platform for genome mining of secondary metabolite producers. Nucleic Acids Res., 41, W204-W212.
    • (2013) Nucleic Acids Res. , vol.41 , pp. W204-W212
    • Blin, K.1
  • 7
    • 84868095931 scopus 로고    scopus 로고
    • Evolutionary imprint of catalytic domains in fungal PKS-NRPS hybrids
    • Boettger, D. et al. (2012) Evolutionary imprint of catalytic domains in fungal PKS-NRPS hybrids. ChemBioChem, 13, 2363-2373.
    • (2012) Chem Bio Chem , vol.13 , pp. 2363-2373
    • Boettger, D.1
  • 8
    • 84871292787 scopus 로고    scopus 로고
    • Regulation of fungal secondary metabolism
    • Brakhage, A.A. (2013) Regulation of fungal secondary metabolism. Nat. Rev. Microbiol., 11, 21-32.
    • (2013) Nat. Rev. Microbiol. , vol.11 , pp. 21-32
    • Brakhage, A.A.1
  • 9
    • 78650198931 scopus 로고    scopus 로고
    • Fungal secondary metabolites-strategies to activate silent gene clusters
    • Brakhage, A.A., Schroeckh, V. (2011) Fungal secondary metabolites-strategies to activate silent gene clusters. Fungal Genet. Biol., 48, 15-22.
    • (2011) Fungal Genet. Biol. , vol.48 , pp. 15-22
    • Brakhage, A.A.1    Schroeckh, V.2
  • 10
    • 84891796318 scopus 로고    scopus 로고
    • The Aspergillus Genome Database: Multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations
    • Cerqueira, G.C. et al. (2014) The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations. Nucleic Acids Res., 42, D705-D710.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D705-D710
    • Cerqueira, G.C.1
  • 11
    • 51849138910 scopus 로고    scopus 로고
    • The GC and window-averaged DNA curvature profile of secondary metabolite gene cluster in Aspergillus fumigatusy genome
    • Do, J., Miyano, S. (2008) The GC and window-averaged DNA curvature profile of secondary metabolite gene cluster in Aspergillus fumigatusy genome. Appl. Microbiol. Biotechnol., 80, 841-847.
    • (2008) Appl. Microbiol. Biotechnol. , vol.80 , pp. 841-847
    • Do, J.1    Miyano, S.2
  • 12
    • 0037199494 scopus 로고    scopus 로고
    • Exploitation of the selectivity-conferring code of nonribosomal peptide synthetases for the rational design of novel peptide antibiotics
    • Eppelmann, K. et al. (2002) Exploitation of the selectivity-conferring code of nonribosomal peptide synthetases for the rational design of novel peptide antibiotics. Biochemistry, 41, 9718-9726.
    • (2002) Biochemistry , vol.41 , pp. 9718-9726
    • Eppelmann, K.1
  • 13
    • 79953300078 scopus 로고    scopus 로고
    • FIMO: Scanning for occurrences of a given motif
    • Grant, C.E. et al. (2011) FIMO: scanning for occurrences of a given motif. Bioinformatics, 27, 1017-1018.
    • (2011) Bioinformatics , vol.27 , pp. 1017-1018
    • Grant, C.E.1
  • 14
    • 33947694781 scopus 로고    scopus 로고
    • Natural products of filamentous fungi: Enzymes genes, and their regulation
    • Hoffmeister, D., Keller, N.P. (2007) Natural products of filamentous fungi: enzymes, genes, and their regulation. Nat. Prod. Rep., 24, 393-416.
    • (2007) Nat. Prod. Rep. , vol.24 , pp. 393-416
    • Hoffmeister, D.1    Keller, N.P.2
  • 15
    • 0031079973 scopus 로고    scopus 로고
    • Metabolic pathway gene clusters in filamentous fungi
    • Keller, N.P., Hohn, T.M. (1997) Metabolic pathway gene clusters in filamentous fungi. Fungal Genet. Biol.: FG&B, 21, 17-29.
    • (1997) Fungal Genet. Biol.: FG&B , vol.21 , pp. 17-29
    • Keller, N.P.1    Hohn, T.M.2
  • 16
    • 77955274600 scopus 로고    scopus 로고
    • SMURF: Genomic mapping of fungal secondary metabolite clusters
    • Khaldi, N. et al. (2010) SMURF: genomic mapping of fungal secondary metabolite clusters. Fungal Genet. Biol., 47, 736-741.
    • (2010) Fungal Genet. Biol. , vol.47 , pp. 736-741
    • Khaldi, N.1
  • 17
    • 0033179468 scopus 로고    scopus 로고
    • The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases
    • Stachelhaus, T. et al. (1999) The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases. Chem. Biol., 6, 493-505.
    • (1999) Chem. Biol. , vol.6 , pp. 493-505
    • Stachelhaus, T.1
  • 18
    • 57149112966 scopus 로고    scopus 로고
    • ClustScan: An integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures
    • Starcevic, A. et al. (2008) ClustScan: an integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures. Nucleic Acids Res., 36, 6882-6892.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 6882-6892
    • Starcevic, A.1
  • 19
    • 61649111711 scopus 로고    scopus 로고
    • CLUSEAN: A computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters
    • Weber, T. et al. (2009) CLUSEAN: a computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters. J. Biotechnol., 140, 13-17.
    • (2009) J. Biotechnol. , vol.140 , pp. 13-17
    • Weber, T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.