-
1
-
-
33745905309
-
The fumitremorgin gene cluster of Aspergillus fumigatus: Identification of a gene encoding brevianamide F synthetase
-
DOI 10.1002/cbic.200600003
-
Maiya, S., Grundmann, A., Li, S.M. and Turner, G. 2006, The fumitremorgin gene cluster of Aspergillus fumigatus: identification of a gene encoding brevianamide F synthetase, Chembiochem, 7, 1062-9. (Pubitemid 44049441)
-
(2006)
ChemBioChem
, vol.7
, Issue.7
, pp. 1062-1069
-
-
Maiya, S.1
Grundmann, A.2
Li, S.-M.3
Turner, G.4
-
2
-
-
33947308882
-
Genomics-driven discovery of PKS-NRPS hybrid metabolites from Aspergillus nidulans
-
DOI 10.1038/nchembio869, PII NCHEMBIO869
-
Bergmann, S., Schumann, J., Scherlach, K., Lange, C., Brakhage, A.A. and Hertweck, C. 2007, Genomics-driven discovery of PKS-NRPS hybrid metabolites from Aspergillus nidulans, Nat Chem Biol., 3, 213-7. (Pubitemid 46440540)
-
(2007)
Nature Chemical Biology
, vol.3
, Issue.4
, pp. 213-217
-
-
Bergmann, S.1
Schumann, J.2
Scherlach, K.3
Lange, C.4
Brakhage, A.A.5
Hertweck, C.6
-
3
-
-
33846861493
-
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
-
DOI 10.1038/nbt1282, PII NBT1282
-
Pel, H.J., de Winde, J.H., Archer, D.B., et al. 2007, Genome sequencing and analysis of the versatile cell factory Aspergillusniger CBS513.88, Nat Biotechnol., 25, 221-31. (Pubitemid 46227122)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.2
, pp. 221-231
-
-
Pel, H.J.1
De Winde, J.H.2
Archer, D.B.3
Dyer, P.S.4
Hofmann, G.5
Schaap, P.J.6
Turner, G.7
De Vries, R.P.8
Albang, R.9
Albermann, K.10
Andersen, M.R.11
Bendtsen, J.D.12
Benen, J.A.E.13
Van Den, B.M.14
Breestraat, S.15
Caddick, M.X.16
Contreras, R.17
Cornell, M.18
Coutinho, P.M.19
Danchin, E.G.J.20
Debets, A.J.M.21
Dekker, P.22
Van Dijck, P.W.M.23
Van Dijk, A.24
Dijkhuizen, L.25
Driessen, A.J.M.26
D'Enfert, C.27
Geysens, S.28
Goosen, C.29
Groot, G.S.P.30
De Groot, P.W.J.31
Guillemette, T.32
Henrissat, B.33
Herweijer, M.34
Van Den, H.J.P.T.W.35
Van Den, H.C.A.M.J.J.36
Van Der, H.R.T.J.M.37
Van Der, K.R.M.38
Klis, F.M.39
Kools, H.J.40
Kubicek, C.P.41
Van Kuyk, P.A.42
Lauber, J.43
Lu, X.44
Van Der, M.M.J.E.C.45
Meulenberg, R.46
Menke, H.47
Mortimer, M.A.48
Nielsen, J.49
Oliver, S.G.50
Olsthoorn, M.51
Pal, K.52
Van Peij, N.N.M.E.53
Ram, A.F.J.54
Rinas, U.55
Roubos, J.A.56
Sagt, C.M.J.57
Schmoll, M.58
Sun, J.59
Ussery, D.60
Varga, J.61
Vervecken, W.62
Van De, V.P.J.J.63
Wedler, H.64
Wosten, H.A.B.65
Zeng, A.-P.66
Van Ooyen, A.J.J.67
Visser, J.68
Stam, H.69
more..
-
4
-
-
61649111711
-
CLUSEAN: A computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters
-
Weber, T., Rausch, C., Lopez, P., et al. 2009, CLUSEAN: a computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters, J Biotechnol., 140, 13-7.
-
(2009)
J Biotechnol
, vol.140
, pp. 13-17
-
-
Weber, T.1
Rausch, C.2
Lopez, P.3
-
5
-
-
57149112966
-
ClustScan: An integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures
-
Starcevic, A., Zucko, J., Simunkovic, J., Long, P.F., Cullum, J. and Hranueli, D. 2008, ClustScan: an integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures, Nucleic Acids Res., 36, 6882-92.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6882-6892
-
-
Starcevic, A.1
Zucko, J.2
Simunkovic, J.3
Long, P.F.4
Cullum, J.5
Hranueli, D.6
-
6
-
-
77955274600
-
SMURF: Genomic mapping of fungal secondary metabolite clusters
-
Khaldi, N., Seifuddin, F.T., Turner, G., et al. 2010, SMURF: genomic mapping of fungal secondary metabolite clusters, Fungal Genet Biol., 47, 736-41.
-
(2010)
Fungal Genet Biol
, vol.47
, pp. 736-741
-
-
Khaldi, N.1
Seifuddin, F.T.2
Turner, G.3
-
7
-
-
84883353135
-
antiSMASH 2.0 - A versatile platform for genome mining of secondary metabolite producers
-
Blin, K., Medema, M.H., Kazempour, D., et al. 2013, antiSMASH 2.0 - a versatile platform for genome mining of secondary metabolite producers, Nucleic Acids Res., 41, W204-12.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Blin, K.1
Medema, M.H.2
Kazempour, D.3
-
8
-
-
79952833264
-
Oxylipins in fungi
-
Brodhun, F. and Feussner, I. 2011, Oxylipins in fungi, FEBS J., 278, 1047-63.
-
(2011)
FEBS J
, vol.278
, pp. 1047-1063
-
-
Brodhun, F.1
Feussner, I.2
-
9
-
-
78449259379
-
Identification and characterization of genes responsible for biosynthesis of kojic acid, an industrially important compound from Aspergillus oryzae
-
Terabayashi, Y., Sano, M., Yamane, N., et al. 2010, Identification and characterization of genes responsible for biosynthesis of kojic acid, an industrially important compound from Aspergillus oryzae, Fungal Genet Biol., 47, 953-61.
-
(2010)
Fungal Genet Biol
, vol.47
, pp. 953-961
-
-
Terabayashi, Y.1
Sano, M.2
Yamane, N.3
-
10
-
-
84877120155
-
Fine De Novo Sequencing of a Fungal Genome Using only SOLiD Short Read Data: Verification on Aspergillus oryzae RIB40
-
Umemura, M., Koyama, Y., Takeda, I., et al. 2013, Fine De Novo Sequencing of a Fungal Genome Using only SOLiD Short Read Data: Verification on Aspergillus oryzae RIB40, PLoS One, 8, e63673.
-
(2013)
PLoS One
, vol.8
-
-
Umemura, M.1
Koyama, Y.2
Takeda, I.3
-
11
-
-
84863229860
-
Advances in Aspergillus secondary metabolite research in the post-genomic era
-
Sanchez, J.F., Somoza, A.D., Keller, N.P. and Wang, C.C. 2012, Advances in Aspergillus secondary metabolite research in the post-genomic era, Nat Prod Rep., 29, 351-71.
-
(2012)
Nat Prod Rep
, vol.29
, pp. 351-371
-
-
Sanchez, J.F.1
Somoza, A.D.2
Keller, N.P.3
Wang, C.C.4
-
12
-
-
29244442741
-
Genome sequencing and analysis of Aspergillus oryzae
-
DOI 10.1038/nature04300
-
Machida, M., Asai, K., Sano, M., et al. 2005, Genome sequencing and analysis of Aspergillus oryzae, Nature, 438, 1157-61. (Pubitemid 41831685)
-
(2005)
Nature
, vol.438
, Issue.7071
, pp. 1157-1161
-
-
Machida, M.1
Asai, K.2
Sano, M.3
Tanaka, T.4
Kumagai, T.5
Terai, G.6
Kusumoto, K.-I.7
Arima, T.8
Akita, O.9
Kashiwagi, Y.10
Abe, K.11
Gomi, K.12
Horiuchi, H.13
Kitamoto, K.14
Kobayashi, T.15
Takeuchi, M.16
Denning, D.W.17
Galagan, J.E.18
Nierman, W.C.19
Yu, J.20
Archer, D.B.21
Bennett, J.W.22
Bhatnagar, D.23
Cleveland, T.E.24
Fedorova, N.D.25
Gotoh, O.26
Horikawa, H.27
Hosoyama, A.28
Ichinomiya, M.29
Igarashi, R.30
Iwashita, K.31
Juvvadi, P.R.32
Kato, M.33
Kato, Y.34
Kin, T.35
Kokubun, A.36
Maeda, H.37
Maeyama, N.38
Maruyama, J.-I.39
Nagasaki, H.40
Nakajima, T.41
Oda, K.42
Okada, K.43
Paulsen, I.44
Sakamoto, K.45
Sawano, T.46
Takahashi, M.47
Takase, K.48
Terabayashi, Y.49
Wortman, J.R.50
Yamada, O.51
Yamagata, Y.52
Anazawa, H.53
Hata, Y.54
Koide, Y.55
Komori, T.56
Koyama, Y.57
Minetoki, T.58
Suharnan, S.59
Tanaka, A.60
Isono, K.61
Kuhara, S.62
Ogasawara, N.63
Kikuchi, H.64
more..
-
13
-
-
84871689083
-
The function and evolution of the Aspergillus genome
-
Gibbons, J.G. and Rokas, A. 2013, The function and evolution of the Aspergillus genome, Trends Microbiol., 21, 14-22.
-
(2013)
Trends Microbiol
, vol.21
, pp. 14-22
-
-
Gibbons, J.G.1
Rokas, A.2
-
14
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., et al. 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res., 25, 3389-402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
15
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. 1990, Basic local alignment search tool, J Mol Biol., 215, 403-10.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
16
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T.F. and Waterman, M.S. 1981, Identification of common molecular subsequences, J Mol Biol., 147, 195-7.
-
(1981)
J Mol Biol
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
17
-
-
0019764298
-
Comparative biosequence metrics
-
Smith, T.F., Waterman, M.S. and Fitch, W.M. 1981, Comparative biosequence metrics, J Mol Evol., 18, 38-46.
-
(1981)
J Mol Evol
, vol.18
, pp. 38-46
-
-
Smith, T.F.1
Waterman, M.S.2
Fitch, W.M.3
-
18
-
-
79959920872
-
antiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
-
Medema, M.H., Blin, K., Cimermancic, P., et al. 2011, antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences, Nucleic Acids Res., 39, W339-346.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Medema, M.H.1
Blin, K.2
Cimermancic, P.3
-
19
-
-
79151477225
-
Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi
-
Slot, J.C. and Rokas, A. 2011, Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi, Curr Biol., 21, 134-9.
-
(2011)
Curr Biol
, vol.21
, pp. 134-139
-
-
Slot, J.C.1
Rokas, A.2
-
20
-
-
0038384339
-
Genetics and biosynthesis of aflatoxins and sterigmatocystin
-
Kempken, F. (ed.), Springer: Berlin, Germany
-
Hicks, J.K., Shimizu, K. and Keller, N.P. 2002, Genetics and biosynthesis of aflatoxins and sterigmatocystin. In: Kempken, F. (ed.), Agricultural Applications. Springer: Berlin, Germany, pp. 55-69.
-
(2002)
Agricultural Applications
, pp. 55-69
-
-
Hicks, J.K.1
Shimizu, K.2
Keller, N.P.3
-
21
-
-
84863204810
-
Horizontal transfer and death of a fungal secondary metabolic gene cluster
-
Campbell, M.A., Rokas, A. and Slot, J.C. 2012, Horizontal transfer and death of a fungal secondary metabolic gene cluster, Genome Biol Evol., 4, 289-93.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 289-293
-
-
Campbell, M.A.1
Rokas, A.2
Slot, J.C.3
-
22
-
-
30544434099
-
Fungal secondary metabolism - From biochemistry to genomics
-
DOI 10.1038/nrmicro1286, PII N1286
-
Keller, N.P., Turner, G. and Bennett, J.W. 2005, Fungal secondary metabolism - from biochemistry to genomics, Nat Rev Microbiol., 3, 937-47. (Pubitemid 43078157)
-
(2005)
Nature Reviews Microbiology
, vol.3
, Issue.12
, pp. 937-947
-
-
Keller, N.P.1
Turner, G.2
Bennett, J.W.3
-
23
-
-
67651065004
-
Efflux in fungi: La piece de resistance
-
Coleman, J.J. and Mylonakis, E. 2009, Efflux in fungi: la piece de resistance, PLoS Pathog., 5, e1000486.
-
(2009)
PLoS Pathog
, vol.5
-
-
Coleman, J.J.1
Mylonakis, E.2
-
24
-
-
84867702338
-
Comparative genome analysis between Aspergillus oryzae strains reveals close relationship between sites of mutation localization and regions of highly divergent genes among Aspergillus species
-
Umemura, M., Koike, H., Yamane, N., et al. 2012, Comparative genome analysis between Aspergillus oryzae strains reveals close relationship between sites of mutation localization and regions of highly divergent genes among Aspergillus species, DNA Res., 19, 375-82.
-
(2012)
DNA Res
, vol.19
, pp. 375-382
-
-
Umemura, M.1
Koike, H.2
Yamane, N.3
-
25
-
-
56149109469
-
Genomics of Aspergillus oryzae: Learning from the history of Koji mold and exploration of its future
-
Machida, M., Yamada, O. and Gomi, K. 2008, Genomics of Aspergillus oryzae: learning from the history of Koji mold and exploration of its future, DNA Res., 15, 173-83.
-
(2008)
DNA Res
, vol.15
, pp. 173-183
-
-
Machida, M.1
Yamada, O.2
Gomi, K.3
-
26
-
-
84864439947
-
Two different secondary metabolism gene clusters occupied the same ancestral locus in fungaldermatophytes of the arthrodermataceae
-
Zhang, H., Rokas, A. and Slot, J.C. 2012, Two different secondary metabolism gene clusters occupied the same ancestral locus in fungaldermatophytes of the arthrodermataceae, PLoS One, 7, e41903.
-
(2012)
PLoS One
, vol.7
-
-
Zhang, H.1
Rokas, A.2
Slot, J.C.3
-
27
-
-
84871997235
-
Accurate prediction of secondary metabolite gene clusters in filamentous fungi
-
Andersen, M.R., Nielsen, J.B., Klitgaard, A., et al. 2013, Accurate prediction of secondary metabolite gene clusters in filamentous fungi, Proc Natl Acad Sci USA, 110, E99-107.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
-
-
Andersen, M.R.1
Nielsen, J.B.2
Klitgaard, A.3
|