-
1
-
-
84893015775
-
Genomics and the origin of species
-
24535286, . ().:–.
-
Seehausen O, Butlin RK, Keller I, Wagner CE, Boughman JW, et al. (2014) Genomics and the origin of species. Nat Rev Genet15: 176–192. doi: 10.1038/nrg364424535286
-
(2014)
Nat Rev Genet
, vol.15
, pp. 176-192
-
-
Seehausen, O.1
Butlin, R.K.2
Keller, I.3
Wagner, C.E.4
Boughman, J.W.5
-
2
-
-
84938514729
-
-
().:.
-
Nosil P, (2012) Ecological speciation. Oxford: Oxford University Press.
-
(2012)
-
-
Nosil, P.1
-
3
-
-
0035677674
-
The genic view of the process of speciation
-
().:–.
-
Wu CI, (2001) The genic view of the process of speciation. J Evol Biol14: 851–865.
-
(2001)
J Evol Biol
, vol.14
, pp. 851-865
-
-
Wu, C.I.1
-
4
-
-
52649106377
-
Hitching a lift on the road to speciation
-
19378398, ().:–.
-
Smadja C, Galindo J, Butlin R, (2008) Hitching a lift on the road to speciation. Mol Ecol17: 4177–4180. 19378398
-
(2008)
Mol Ecol
, vol.17
, pp. 4177-4180
-
-
Smadja, C.1
Galindo, J.2
Butlin, R.3
-
5
-
-
52649091697
-
The genetic mosaic suggests a new role for hitchhiking in ecological speciation
-
18986504, ().:–.
-
Via S, West J, (2008) The genetic mosaic suggests a new role for hitchhiking in ecological speciation. Mol Ecol17: 4334–4345. doi: 10.1111/j.1365-294X.2008.03921.x18986504
-
(2008)
Mol Ecol
, vol.17
, pp. 4334-4345
-
-
Via, S.1
West, J.2
-
6
-
-
84862499260
-
The genomics of speciation-with-gene-flow
-
22520730, ().:–.
-
Feder JL, Egan SP, Nosil P, (2012) The genomics of speciation-with-gene-flow. Trends Genet28: 342–350. doi: 10.1016/j.tig.2012.03.00922520730
-
(2012)
Trends Genet
, vol.28
, pp. 342-350
-
-
Feder, J.L.1
Egan, S.P.2
Nosil, P.3
-
7
-
-
84905374931
-
Theoretical models of the influence of genomic architecture on the dynamics of speciation
-
24724861, ().:–.
-
Flaxman SM, Wacholder AC, Feder JL, Nosil P, (2014) Theoretical models of the influence of genomic architecture on the dynamics of speciation. Mol Ecol23: 4074–4088. doi: 10.1111/mec.1275024724861
-
(2014)
Mol Ecol
, vol.23
, pp. 4074-4088
-
-
Flaxman, S.M.1
Wacholder, A.C.2
Feder, J.L.3
Nosil, P.4
-
8
-
-
24944471763
-
Genomic islands of speciation in Anopheles gambiae
-
16076241, ().:.
-
Turner TL, Hahn MW, Nuzhdin SV, (2005) Genomic islands of speciation in Anopheles gambiae. PLoS Biol3: e285. 16076241
-
(2005)
PLoS Biol
, vol.3
, pp. e285
-
-
Turner, T.L.1
Hahn, M.W.2
Nuzhdin, S.V.3
-
9
-
-
33744816190
-
Genomic islands of differentiation between house mouse subspecies
-
16687734, ().:–.
-
Harr B, (2006) Genomic islands of differentiation between house mouse subspecies. Genome Res16: 730–737. 16687734
-
(2006)
Genome Res
, vol.16
, pp. 730-737
-
-
Harr, B.1
-
10
-
-
0000978195
-
Skepticism towards Santa Rosalia, or why are there so few kinds of animals
-
().:–.
-
Felsenstein J, (1981) Skepticism towards Santa Rosalia, or why are there so few kinds of animals. Evolution35: 124–138.
-
(1981)
Evolution
, vol.35
, pp. 124-138
-
-
Felsenstein, J.1
-
11
-
-
0036182581
-
Speciation by natural and sexual selection: models and experiments
-
18707367, ().:–.
-
Kirkpatrick M, Ravigne V, (2002) Speciation by natural and sexual selection: models and experiments. Am Nat159Suppl 3: S22–35. doi: 10.1086/33837018707367
-
(2002)
Am Nat
, vol.159
, pp. S22-35
-
-
Kirkpatrick, M.1
Ravigne, V.2
-
12
-
-
84959903113
-
-
().:.
-
Gavrilets S, (2004) Fitness landscapes and the origin of species. Princeton, NJ: Princeton University Press.
-
(2004)
-
-
Gavrilets, S.1
-
13
-
-
79960020226
-
The genetic architecture of adaptation under migration-selection balance
-
21729046, ().:–.
-
Yeaman S, Whitlock MC, (2011) The genetic architecture of adaptation under migration-selection balance. Evolution65: 1897–1911. doi: 10.1111/j.1558-5646.2011.01269.x21729046
-
(2011)
Evolution
, vol.65
, pp. 1897-1911
-
-
Yeaman, S.1
Whitlock, M.C.2
-
14
-
-
84255162277
-
Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice
-
22201170, ().:–.
-
Nachman MW, Payseur BA, (2012) Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice. Philos Trans R Soc Lond B Biol Sci367: 409–421. doi: 10.1098/rstb.2011.024922201170
-
(2012)
Philos Trans R Soc Lond B Biol Sci
, vol.367
, pp. 409-421
-
-
Nachman, M.W.1
Payseur, B.A.2
-
15
-
-
33744466839
-
Chromosome inversions, local adaptation and speciation
-
16204214, ().:–.
-
Kirkpatrick M, Barton N, (2006) Chromosome inversions, local adaptation and speciation. Genetics173: 419–434. 16204214
-
(2006)
Genetics
, vol.173
, pp. 419-434
-
-
Kirkpatrick, M.1
Barton, N.2
-
16
-
-
84877316373
-
Genomic rearrangements and the evolution of clusters of locally adaptive loci
-
23610436, ().:–.
-
Yeaman S, (2013) Genomic rearrangements and the evolution of clusters of locally adaptive loci. Proc Natl Acad Sci U S A110: E1743–1751. doi: 10.1073/pnas.121938111023610436
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. E1743-1751
-
-
Yeaman, S.1
-
17
-
-
77953625372
-
Genomic islands of speciation or genomic islands and speciation?
-
20456221, ():–.
-
Turner TL, Hahn MW, (2010) Genomic islands of speciation or genomic islands and speciation?Mol Ecol19: 848–850. doi: 10.1111/j.1365-294X.2010.04532.x20456221
-
(2010)
Mol Ecol
, vol.19
, pp. 848-850
-
-
Turner, T.L.1
Hahn, M.W.2
-
18
-
-
79955950528
-
Ecology, sexual selection and speciation
-
21375683, ().:–.
-
Maan ME, Seehausen O, (2011) Ecology, sexual selection and speciation. Ecol Lett14: 591–602. doi: 10.1111/j.1461-0248.2011.01606.x21375683
-
(2011)
Ecol Lett
, vol.14
, pp. 591-602
-
-
Maan, M.E.1
Seehausen, O.2
-
19
-
-
79960213694
-
Magic traits in speciation: 'magic' but not rare?
-
21592615, ():–.
-
Servedio MR, Van Doorn GS, Kopp M, Frame AM, Nosil P, (2011) Magic traits in speciation: 'magic' but not rare?Trends Ecol Evol26: 389–397. doi: 10.1016/j.tree.2011.04.00521592615
-
(2011)
Trends Ecol Evol
, vol.26
, pp. 389-397
-
-
Servedio, M.R.1
Van Doorn, G.S.2
Kopp, M.3
Frame, A.M.4
Nosil, P.5
-
20
-
-
60949088263
-
Ecological explanations for (incomplete) speciation
-
19185951, ().:–.
-
Nosil P, Harmon LJ, Seehausen O, (2009) Ecological explanations for (incomplete) speciation. Trends Ecol Evol24: 145–156. doi: 10.1016/j.tree.2008.10.01119185951
-
(2009)
Trends Ecol Evol
, vol.24
, pp. 145-156
-
-
Nosil, P.1
Harmon, L.J.2
Seehausen, O.3
-
21
-
-
84255177701
-
Establishment of new mutations under divergence and genome hitchhiking
-
22201175, ().:–.
-
Feder JL, Gejji R, Yeaman S, Nosil P, (2012) Establishment of new mutations under divergence and genome hitchhiking. Philos Trans R Soc Lond B Biol Sci367: 461–474. doi: 10.1098/rstb.2011.025622201175
-
(2012)
Philos Trans R Soc Lond B Biol Sci
, vol.367
, pp. 461-474
-
-
Feder, J.L.1
Gejji, R.2
Yeaman, S.3
Nosil, P.4
-
22
-
-
84255187761
-
Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow
-
22201174, ().:–.
-
Via S, (2012) Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow. Philos Trans R Soc Lond B Biol Sci367: 451–460. doi: 10.1098/rstb.2011.026022201174
-
(2012)
Philos Trans R Soc Lond B Biol Sci
, vol.367
, pp. 451-460
-
-
Via, S.1
-
23
-
-
77953092533
-
Widespread genomic divergence during sympatric speciation
-
20457907, . ().:–.
-
Michel AP, Sim S, Powell TH, Taylor MS, Nosil P, et al. (2010) Widespread genomic divergence during sympatric speciation. Proc Natl Acad Sci U S A107: 9724–9729. doi: 10.1073/pnas.100093910720457907
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 9724-9729
-
-
Michel, A.P.1
Sim, S.2
Powell, T.H.3
Taylor, M.S.4
Nosil, P.5
-
24
-
-
77649219524
-
Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
-
20195501, . ().:.
-
Hohenlohe PA, Bassham S, Etter PD, Stiffler N, Johnson EA, et al. (2010) Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. PLoS Genet6: e1000862. doi: 10.1371/journal.pgen.100086220195501
-
(2010)
PLoS Genet
, vol.6
, pp. e1000862
-
-
Hohenlohe, P.A.1
Bassham, S.2
Etter, P.D.3
Stiffler, N.4
Johnson, E.A.5
-
25
-
-
84855708550
-
A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence in sticklebacks
-
22197244, . ().:–.
-
Jones FC, Chan YF, Schmutz J, Grimwood J, Brady SD, et al. (2012) A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence in sticklebacks. Curr Biol22: 83–90. doi: 10.1016/j.cub.2011.11.04522197244
-
(2012)
Curr Biol
, vol.22
, pp. 83-90
-
-
Jones, F.C.1
Chan, Y.F.2
Schmutz, J.3
Grimwood, J.4
Brady, S.D.5
-
26
-
-
84859462157
-
The genomic basis of adaptive evolution in threespine sticklebacks
-
22481358, . ().:–.
-
Jones FC, Grabherr MG, Chan YF, Russell P, Mauceli E, et al. (2012) The genomic basis of adaptive evolution in threespine sticklebacks. Nature484: 55–61. doi: 10.1038/nature1094422481358
-
(2012)
Nature
, vol.484
, pp. 55-61
-
-
Jones, F.C.1
Grabherr, M.G.2
Chan, Y.F.3
Russell, P.4
Mauceli, E.5
-
27
-
-
84255198561
-
Genome-wide patterns of divergence during speciation: the lake whitefish case study
-
22201165, . ().:–.
-
Renaut S, Maillet N, Normandeau E, Sauvage C, Derome N, et al. (2012) Genome-wide patterns of divergence during speciation: the lake whitefish case study. Philos Trans R Soc Lond B Biol Sci367: 354–363. doi: 10.1098/rstb.2011.019722201165
-
(2012)
Philos Trans R Soc Lond B Biol Sci
, vol.367
, pp. 354-363
-
-
Renaut, S.1
Maillet, N.2
Normandeau, E.3
Sauvage, C.4
Derome, N.5
-
28
-
-
84878589154
-
Genomic islands of divergence are not affected by geography of speciation in sunflowers
-
23652015, . ().:.
-
Renaut S, Grassa CJ, Yeaman S, Moyers BT, Lai Z, et al. (2013) Genomic islands of divergence are not affected by geography of speciation in sunflowers. Nat Commun4: 1827. doi: 10.1038/ncomms283323652015
-
(2013)
Nat Commun
, vol.4
, pp. 1827
-
-
Renaut, S.1
Grassa, C.J.2
Yeaman, S.3
Moyers, B.T.4
Lai, Z.5
-
29
-
-
84900439893
-
Stick insect genomes reveal natural selection's role in parallel speciation
-
24833390, . ().:–.
-
Soria-Carrasco V, Gompert Z, Comeault AA, Farkas TE, Parchman TL, et al. (2014) Stick insect genomes reveal natural selection's role in parallel speciation. Science344: 738–742. doi: 10.1126/science.125213624833390
-
(2014)
Science
, vol.344
, pp. 738-742
-
-
Soria-Carrasco, V.1
Gompert, Z.2
Comeault, A.A.3
Farkas, T.E.4
Parchman, T.L.5
-
30
-
-
84907867272
-
The genomic substrate for adaptive radiation in African cichlid fish
-
25186727, . ().:–.
-
Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, et al. (2014) The genomic substrate for adaptive radiation in African cichlid fish. Nature513: 375–381. doi: 10.1038/nature1372625186727
-
(2014)
Nature
, vol.513
, pp. 375-381
-
-
Brawand, D.1
Wagner, C.E.2
Li, Y.I.3
Malinsky, M.4
Keller, I.5
-
31
-
-
58749092473
-
Divergent selection and heterogeneous genomic divergence
-
19143936, ().:–.
-
Nosil P, Funk DJ, Ortiz-Barrientos D, (2009) Divergent selection and heterogeneous genomic divergence. Mol Ecol18: 375–402. doi: 10.1111/j.1365-294X.2008.03946.x19143936
-
(2009)
Mol Ecol
, vol.18
, pp. 375-402
-
-
Nosil, P.1
Funk, D.J.2
Ortiz-Barrientos, D.3
-
32
-
-
84862025426
-
Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs
-
22384978, ().:–.
-
Roesti M, Hendry AP, Salzburger W, Berner D, (2012) Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs. Mol Ecol21: 2852–2862. doi: 10.1111/j.1365-294X.2012.05509.x22384978
-
(2012)
Mol Ecol
, vol.21
, pp. 2852-2862
-
-
Roesti, M.1
Hendry, A.P.2
Salzburger, W.3
Berner, D.4
-
33
-
-
84870297139
-
The genomic landscape of species divergence in Ficedula flycatchers
-
23103876, . ().:–.
-
Ellegren H, Smeds L, Burri R, Olason PI, Backstrom N, et al. (2012) The genomic landscape of species divergence in Ficedula flycatchers. Nature491: 756–760. doi: 10.1038/nature1158423103876
-
(2012)
Nature
, vol.491
, pp. 756-760
-
-
Ellegren, H.1
Smeds, L.2
Burri, R.3
Olason, P.I.4
Backstrom, N.5
-
34
-
-
84886085175
-
Genome-wide evidence for speciation with gene flow in Heliconius butterflies
-
24045163, . ().:–.
-
Martin SH, Dasmahapatra KK, Nadeau NJ, Salazar C, Walters JR, et al. (2013) Genome-wide evidence for speciation with gene flow in Heliconius butterflies. Genome Res23: 1817–1828. doi: 10.1101/gr.159426.11324045163
-
(2013)
Genome Res
, vol.23
, pp. 1817-1828
-
-
Martin, S.H.1
Dasmahapatra, K.K.2
Nadeau, N.J.3
Salazar, C.4
Walters, J.R.5
-
35
-
-
84923353165
-
Evolution of Darwin's finches and their beaks revealed by genome sequencing
-
25686609, . ().:–.
-
Lamichhaney S, Berglund J, Almen MS, Maqbool K, Grabherr M, et al. (2015) Evolution of Darwin's finches and their beaks revealed by genome sequencing. Nature518: 371–375. doi: 10.1038/nature1418125686609
-
(2015)
Nature
, vol.518
, pp. 371-375
-
-
Lamichhaney, S.1
Berglund, J.2
Almen, M.S.3
Maqbool, K.4
Grabherr, M.5
-
36
-
-
84924357819
-
Genomics of divergence along a continuum of parapatric population differentiation
-
25679225, . ().:.
-
Feulner PG, Chain FJ, Panchal M, Huang Y, Eizaguirre C, et al. (2015) Genomics of divergence along a continuum of parapatric population differentiation. PLoS Genet11: e1004966. doi: 10.1371/journal.pgen.100496625679225
-
(2015)
PLoS Genet
, vol.11
, pp. e1004966
-
-
Feulner, P.G.1
Chain, F.J.2
Panchal, M.3
Huang, Y.4
Eizaguirre, C.5
-
37
-
-
84255187780
-
Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes
-
22201169, ().:–.
-
Hohenlohe PA, Bassham S, Currey M, Cresko WA, (2012) Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes. Philos Trans R Soc Lond B Biol Sci367: 395–408. doi: 10.1098/rstb.2011.024522201169
-
(2012)
Philos Trans R Soc Lond B Biol Sci
, vol.367
, pp. 395-408
-
-
Hohenlohe, P.A.1
Bassham, S.2
Currey, M.3
Cresko, W.A.4
-
38
-
-
42449144387
-
Speciation with gene flow could be common
-
18410295, ().:–.
-
Nosil P, (2008) Speciation with gene flow could be common. Mol Ecol17: 2103–2106. doi: 10.1111/j.1365-294X.2008.03715.x18410295
-
(2008)
Mol Ecol
, vol.17
, pp. 2103-2106
-
-
Nosil, P.1
-
39
-
-
70450233628
-
Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species
-
19920849, ().:–.
-
Noor MA, Bennett SM, (2009) Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species. Heredity103: 439–444. doi: 10.1038/hdy.2009.15119920849
-
(2009)
Heredity
, vol.103
, pp. 439-444
-
-
Noor, M.A.1
Bennett, S.M.2
-
40
-
-
84903376433
-
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow
-
24845075, ().:–.
-
Cruickshank TE, Hahn MW, (2014) Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow. Mol Ecol23: 3133–3157. doi: 10.1111/mec.1279624845075
-
(2014)
Mol Ecol
, vol.23
, pp. 3133-3157
-
-
Cruickshank, T.E.1
Hahn, M.W.2
-
41
-
-
33747180898
-
Evolutionary biology: how did the human species form?
-
16920616, ():–.
-
Barton NH, (2006) Evolutionary biology: how did the human species form?Curr Biol16: R647–650. 16920616
-
(2006)
Curr Biol
, vol.16
, pp. R647-650
-
-
Barton, N.H.1
-
42
-
-
84878019197
-
Understanding the origin of species with genome-scale data: modelling gene flow
-
23657479, ().:–.
-
Sousa V, Hey J, (2013) Understanding the origin of species with genome-scale data: modelling gene flow. Nat Rev Genet14: 404–414. doi: 10.1038/nrg344623657479
-
(2013)
Nat Rev Genet
, vol.14
, pp. 404-414
-
-
Sousa, V.1
Hey, J.2
-
43
-
-
0036775252
-
Speciation in nature: the threespine stickleback model systems
-
().:–.
-
McKinnon JS, Rundle HD, (2002) Speciation in nature: the threespine stickleback model systems. Trends Ecol Evol17: 480–488.
-
(2002)
Trends Ecol Evol
, vol.17
, pp. 480-488
-
-
McKinnon, J.S.1
Rundle, H.D.2
-
44
-
-
84952705304
-
Evolution of stickleback in 50 years on earthquake-uplifted islands
-
26668399, . ().:–.
-
Lescak EA, Bassham SL, Catchen J, Gelmond O, Sherbick ML, et al. (2015) Evolution of stickleback in 50 years on earthquake-uplifted islands. Proc Natl Acad Sci U S A112: E7204–7212. doi: 10.1073/pnas.151202011226668399
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, pp. E7204-7212
-
-
Lescak, E.A.1
Bassham, S.L.2
Catchen, J.3
Gelmond, O.4
Sherbick, M.L.5
-
45
-
-
84908326162
-
Fast evolution from precast bricks: genomics of young freshwater populations of threespine stickleback Gasterosteus aculeatus
-
25299485, . ().:.
-
Terekhanova NV, Logacheva MD, Penin AA, Neretina TV, Barmintseva AE, et al. (2014) Fast evolution from precast bricks: genomics of young freshwater populations of threespine stickleback Gasterosteus aculeatus. PLoS Genet10: e1004696. doi: 10.1371/journal.pgen.100469625299485
-
(2014)
PLoS Genet
, vol.10
, pp. e1004696
-
-
Terekhanova, N.V.1
Logacheva, M.D.2
Penin, A.A.3
Neretina, T.V.4
Barmintseva, A.E.5
-
46
-
-
77956575325
-
Hybridization between distant lineages increases adaptive variation during a biological invasion: stickleback in Switzerland
-
20735738, ().:–.
-
Lucek K, Roy D, Bezault E, Sivasundar A, Seehausen O, (2010) Hybridization between distant lineages increases adaptive variation during a biological invasion: stickleback in Switzerland. Mol Ecol19: 3995–4011. doi: 10.1111/j.1365-294X.2010.04781.x20735738
-
(2010)
Mol Ecol
, vol.19
, pp. 3995-4011
-
-
Lucek, K.1
Roy, D.2
Bezault, E.3
Sivasundar, A.4
Seehausen, O.5
-
52
-
-
84959908803
-
Zum Vorkommen des Dreistachligen Stichlings (Gasterosteus aculeatus, Pisces: Gasterosteidae) im österreichischen Donauraum
-
().:–.
-
Ahnelt H, (1986) Zum Vorkommen des Dreistachligen Stichlings (Gasterosteus aculeatus, Pisces: Gasterosteidae) im österreichischen Donauraum. Annalen des Naturhistorischen Museums in Wien88/89B: 309–314.
-
(1986)
Annalen des Naturhistorischen Museums in Wien
, vol.88/89B
, pp. 309-314
-
-
Ahnelt, H.1
-
53
-
-
84946782276
-
The genomics of ecological vicariance in threespine stickleback fish
-
26556609, ().:.
-
Roesti M, Kueng B, Moser D, Berner D, (2015) The genomics of ecological vicariance in threespine stickleback fish. Nat Commun6: 8767. doi: 10.1038/ncomms976726556609
-
(2015)
Nat Commun
, vol.6
, pp. 8767
-
-
Roesti, M.1
Kueng, B.2
Moser, D.3
Berner, D.4
-
55
-
-
84945299729
-
Hybrid 'superswarm' leads to rapid divergence and establishment of populations during a biological invasion
-
26426979, ().:–.
-
Roy D, Lucek K, Walter RP, Seehausen O, (2015) Hybrid 'superswarm' leads to rapid divergence and establishment of populations during a biological invasion. Mol Ecol24: 5394–5411. doi: 10.1111/mec.1340526426979
-
(2015)
Mol Ecol
, vol.24
, pp. 5394-5411
-
-
Roy, D.1
Lucek, K.2
Walter, R.P.3
Seehausen, O.4
-
56
-
-
84870744342
-
Repeated lake-stream divergence in stickleback life history within a Central European lake basin
-
23226528, ().:.
-
Moser D, Roesti M, Berner D, (2012) Repeated lake-stream divergence in stickleback life history within a Central European lake basin. PLoS One7: e50620. doi: 10.1371/journal.pone.005062023226528
-
(2012)
PLoS One
, vol.7
, pp. e50620
-
-
Moser, D.1
Roesti, M.2
Berner, D.3
-
57
-
-
78449272899
-
Constraints on speciation suggested by comparing lake-stream stickleback divergence across two continents
-
20964754, ().:–.
-
Berner D, Roesti M, Hendry AP, Salzburger W, (2010) Constraints on speciation suggested by comparing lake-stream stickleback divergence across two continents. Mol Ecol19: 4963–4978. doi: 10.1111/j.1365-294X.2010.04858.x20964754
-
(2010)
Mol Ecol
, vol.19
, pp. 4963-4978
-
-
Berner, D.1
Roesti, M.2
Hendry, A.P.3
Salzburger, W.4
-
58
-
-
84869001481
-
Evidence of adaptive evolutionary divergence during biological invasion
-
23152900, ().:.
-
Lucek K, Sivasundar A, Seehausen O, (2012) Evidence of adaptive evolutionary divergence during biological invasion. PLoS One7: e49377. doi: 10.1371/journal.pone.004937723152900
-
(2012)
PLoS One
, vol.7
, pp. e49377
-
-
Lucek, K.1
Sivasundar, A.2
Seehausen, O.3
-
59
-
-
84888068262
-
Repeated and predictable patterns of ecotypic differentiation during a biological invasion: lake-stream divergence in parapatric Swiss stickleback
-
24164658, ().:–.
-
Lucek K, Sivasundar A, Roy D, Seehausen O, (2013) Repeated and predictable patterns of ecotypic differentiation during a biological invasion: lake-stream divergence in parapatric Swiss stickleback. J Evol Biol26: 2691–2709. doi: 10.1111/jeb.1226724164658
-
(2013)
J Evol Biol
, vol.26
, pp. 2691-2709
-
-
Lucek, K.1
Sivasundar, A.2
Roy, D.3
Seehausen, O.4
-
60
-
-
84939229279
-
Divergent macroparasite infections in parapatric Swiss lake-stream pairs of threespine stickleback (Gasterosteus aculeatus)
-
().in press.
-
Karvonen A, Lucek K, Marques DA, Seehausen O, (2015) Divergent macroparasite infections in parapatric Swiss lake-stream pairs of threespine stickleback (Gasterosteus aculeatus). PLoS One in press.
-
(2015)
PLoS One
-
-
Karvonen, A.1
Lucek, K.2
Marques, D.A.3
Seehausen, O.4
-
61
-
-
0001350117
-
Evolution of variation and distributional patterns in European populations of 3-spined stickleback, Gasterosteus aculeatus
-
().:–&.
-
Munzing J, (1963) Evolution of variation and distributional patterns in European populations of 3-spined stickleback, Gasterosteus aculeatus. Evolution17: 320–&.
-
(1963)
Evolution
, vol.17
, pp. 320
-
-
Munzing, J.1
-
62
-
-
85026957115
-
Welche Stichlingsart kommt in Österreich vor, Gasterosteus aculeatus oder Gasterosteus gymnurus?
-
():–.
-
Kleinlercher G, Muerth P, Pohl H, Ahnelt H, (2008) Welche Stichlingsart kommt in Österreich vor, Gasterosteus aculeatus oder Gasterosteus gymnurus?Österreichs Fischerei61: 158–161.
-
(2008)
Österreichs Fischerei
, vol.61
, pp. 158-161
-
-
Kleinlercher, G.1
Muerth, P.2
Pohl, H.3
Ahnelt, H.4
-
63
-
-
33645864039
-
Genetic relationships among marine and freshwater populations of the European three-spined stickleback (Gasterosteus aculeatus) revealed by microsatellites
-
16629808, ().:–.
-
Makinen HS, Cano JM, Merila J, (2006) Genetic relationships among marine and freshwater populations of the European three-spined stickleback (Gasterosteus aculeatus) revealed by microsatellites. Mol Ecol15: 1519–1534. 16629808
-
(2006)
Mol Ecol
, vol.15
, pp. 1519-1534
-
-
Makinen, H.S.1
Cano, J.M.2
Merila, J.3
-
64
-
-
37249086149
-
Mitochondrial DNA phylogeography of the three-spined stickleback (Gasterosteus aculeatus) in Europe-evidence for multiple glacial refugia
-
17716925, ().:–.
-
Makinen HS, Merila J, (2008) Mitochondrial DNA phylogeography of the three-spined stickleback (Gasterosteus aculeatus) in Europe-evidence for multiple glacial refugia. Mol Phylogenet Evol46: 167–182. 17716925
-
(2008)
Mol Phylogenet Evol
, vol.46
, pp. 167-182
-
-
Makinen, H.S.1
Merila, J.2
-
65
-
-
84906829507
-
Disentangling the role of phenotypic plasticity and genetic divergence in contemporary ecotype formation during a biological invasion
-
24766190, ().:–.
-
Lucek K, Sivasundar A, Seehausen O, (2014) Disentangling the role of phenotypic plasticity and genetic divergence in contemporary ecotype formation during a biological invasion. Evolution68: 2619–2632. doi: 10.1111/evo.1244324766190
-
(2014)
Evolution
, vol.68
, pp. 2619-2632
-
-
Lucek, K.1
Sivasundar, A.2
Seehausen, O.3
-
66
-
-
84871157927
-
Parallel and nonparallel ecological, morphological and genetic divergence in lake-stream stickleback from a single catchment
-
23199201, ().:–.
-
Ravinet M, Prodohl PA, Harrod C, (2013) Parallel and nonparallel ecological, morphological and genetic divergence in lake-stream stickleback from a single catchment. J Evol Biol26: 186–204. doi: 10.1111/jeb.1204923199201
-
(2013)
J Evol Biol
, vol.26
, pp. 186-204
-
-
Ravinet, M.1
Prodohl, P.A.2
Harrod, C.3
-
67
-
-
0027444450
-
Parapatric Lake and Stream Sticklebacks on Northern Vancouver Island—Disjunct Distribution or Parallel Evolution
-
().:–.
-
Lavin PA, Mcphail JD, (1993) Parapatric Lake and Stream Sticklebacks on Northern Vancouver Island—Disjunct Distribution or Parallel Evolution. Can J Zool71: 11–17.
-
(1993)
Can J Zool
, vol.71
, pp. 11-17
-
-
Lavin, P.A.1
Mcphail, J.D.2
-
68
-
-
0035989033
-
Adaptive divergence and the balance between selection and gene flow: lake and stream stickleback in the Misty system
-
12144020, ().:–.
-
Hendry AP, Taylor EB, McPhail JD, (2002) Adaptive divergence and the balance between selection and gene flow: lake and stream stickleback in the Misty system. Evolution56: 1199–1216. 12144020
-
(2002)
Evolution
, vol.56
, pp. 1199-1216
-
-
Hendry, A.P.1
Taylor, E.B.2
McPhail, J.D.3
-
69
-
-
67649425415
-
Variable progress toward ecological speciation in parapatry: stickleback across eight lake-stream transitions
-
19228184, ().:–.
-
Berner D, Grandchamp AC, Hendry AP, (2009) Variable progress toward ecological speciation in parapatry: stickleback across eight lake-stream transitions. Evolution63: 1740–1753. doi: 10.1111/j.1558-5646.2009.00665.x19228184
-
(2009)
Evolution
, vol.63
, pp. 1740-1753
-
-
Berner, D.1
Grandchamp, A.C.2
Hendry, A.P.3
-
70
-
-
84857599761
-
Population genomics of parallel phenotypic evolution in stickleback across stream-lake ecological transitions
-
21976692, . ().:–.
-
Deagle BE, Jones FC, Chan YF, Absher DM, Kingsley DM, et al. (2012) Population genomics of parallel phenotypic evolution in stickleback across stream-lake ecological transitions. Proc Biol Sci279: 1277–1286. doi: 10.1098/rspb.2011.155221976692
-
(2012)
Proc Biol Sci
, vol.279
, pp. 1277-1286
-
-
Deagle, B.E.1
Jones, F.C.2
Chan, Y.F.3
Absher, D.M.4
Kingsley, D.M.5
-
71
-
-
46749155137
-
Ecological predictions lead to the discovery of a benthic-limnetic sympatric species pair of threespine stickleback in Little Quarry Lake, British Columbia
-
().:–.
-
Gow JL, Rogers SM, Jackson M, Schluter D, (2008) Ecological predictions lead to the discovery of a benthic-limnetic sympatric species pair of threespine stickleback in Little Quarry Lake, British Columbia. Can J Zool86: 564–571.
-
(2008)
Can J Zool
, vol.86
, pp. 564-571
-
-
Gow, J.L.1
Rogers, S.M.2
Jackson, M.3
Schluter, D.4
-
72
-
-
0034619866
-
Historical contingency and ecological determinism interact to prime speciation in sticklebacks, Gasterosteus
-
11133026, ().:–.
-
Taylor EB, McPhail JD, (2000) Historical contingency and ecological determinism interact to prime speciation in sticklebacks, Gasterosteus. Proc Biol Sci267: 2375–2384. 11133026
-
(2000)
Proc Biol Sci
, vol.267
, pp. 2375-2384
-
-
Taylor, E.B.1
McPhail, J.D.2
-
73
-
-
84878461117
-
Special features of RAD Sequencing data: implications for genotyping
-
23110438, . ().:–.
-
Davey JW, Cezard T, Fuentes-Utrilla P, Eland C, Gharbi K, et al. (2013) Special features of RAD Sequencing data: implications for genotyping. Molecular Ecology22: 3151–3164. doi: 10.1111/mec.1208423110438
-
(2013)
Molecular Ecology
, vol.22
, pp. 3151-3164
-
-
Davey, J.W.1
Cezard, T.2
Fuentes-Utrilla, P.3
Eland, C.4
Gharbi, K.5
-
74
-
-
84919725058
-
Demystifying the RAD fad
-
25319241, . ().:–.
-
Puritz JB, Matz MV, Toonen RJ, Weber JN, Bolnick DI, et al. (2014) Demystifying the RAD fad. Molecular Ecology23: 5937–5942. doi: 10.1111/mec.1296525319241
-
(2014)
Molecular Ecology
, vol.23
, pp. 5937-5942
-
-
Puritz, J.B.1
Matz, M.V.2
Toonen, R.J.3
Weber, J.N.4
Bolnick, D.I.5
-
75
-
-
84896902748
-
Recent novel approaches for population genomics data analysis
-
24495199, ().:–.
-
Andrews KR, Luikart G, (2014) Recent novel approaches for population genomics data analysis. Molecular Ecology23: 1661–1667. doi: 10.1111/mec.1268624495199
-
(2014)
Molecular Ecology
, vol.23
, pp. 1661-1667
-
-
Andrews, K.R.1
Luikart, G.2
-
76
-
-
84858711967
-
Evolutionary forces shaping genomic islands of population differentiation in humans
-
22439654, ().:.
-
Hofer T, Foll M, Excoffier L, (2012) Evolutionary forces shaping genomic islands of population differentiation in humans. BMC Genomics13: 107. doi: 10.1186/1471-2164-13-10722439654
-
(2012)
BMC Genomics
, vol.13
, pp. 107
-
-
Hofer, T.1
Foll, M.2
Excoffier, L.3
-
77
-
-
84878444624
-
Recombination in the threespine stickleback genome—patterns and consequences
-
23601112, ().:–.
-
Roesti M, Moser D, Berner D, (2013) Recombination in the threespine stickleback genome—patterns and consequences. Mol Ecol22: 3014–3027. doi: 10.1111/mec.1232223601112
-
(2013)
Mol Ecol
, vol.22
, pp. 3014-3027
-
-
Roesti, M.1
Moser, D.2
Berner, D.3
-
78
-
-
0035924332
-
The genetic architecture of divergence between threespine stickleback species
-
11780061, . ().:–.
-
Peichel CL, Nereng KS, Ohgi KA, Cole BL, Colosimo PF, et al. (2001) The genetic architecture of divergence between threespine stickleback species. Nature414: 901–905. 11780061
-
(2001)
Nature
, vol.414
, pp. 901-905
-
-
Peichel, C.L.1
Nereng, K.S.2
Ohgi, K.A.3
Cole, B.L.4
Colosimo, P.F.5
-
79
-
-
19344367109
-
The genetic architecture of parallel armor plate reduction in threespine sticklebacks
-
15069472, . ().:.
-
Colosimo PF, Peichel CL, Nereng K, Blackman BK, Shapiro MD, et al. (2004) The genetic architecture of parallel armor plate reduction in threespine sticklebacks. PLoS Biol2: E109. 15069472
-
(2004)
PLoS Biol
, vol.2
, pp. E109
-
-
Colosimo, P.F.1
Peichel, C.L.2
Nereng, K.3
Blackman, B.K.4
Shapiro, M.D.5
-
80
-
-
1942469390
-
Parallel genetic basis for repeated evolution of armor loss in Alaskan threespine stickleback populations
-
15069186, . ().:–.
-
Cresko WA, Amores A, Wilson C, Murphy J, Currey M, et al. (2004) Parallel genetic basis for repeated evolution of armor loss in Alaskan threespine stickleback populations. Proc Natl Acad Sci U S A101: 6050–6055. 15069186
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 6050-6055
-
-
Cresko, W.A.1
Amores, A.2
Wilson, C.3
Murphy, J.4
Currey, M.5
-
81
-
-
1942455815
-
Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks
-
15085123, . ().:–.
-
Shapiro MD, Marks ME, Peichel CL, Blackman BK, Nereng KS, et al. (2004) Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks. Nature428: 717–723. 15085123
-
(2004)
Nature
, vol.428
, pp. 717-723
-
-
Shapiro, M.D.1
Marks, M.E.2
Peichel, C.L.3
Blackman, B.K.4
Nereng, K.S.5
-
82
-
-
20144371089
-
Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles
-
15790847, . ().:–.
-
Colosimo PF, Hosemann KE, Balabhadra S, Villarreal G, Jr.Dickson M, et al. (2005) Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles. Science307: 1928–1933. 15790847
-
(2005)
Science
, vol.307
, pp. 1928-1933
-
-
Colosimo, P.F.1
Hosemann, K.E.2
Balabhadra, S.3
Villarreal, G.4
Dickson, M.5
-
83
-
-
17644375490
-
Evolution and development of facial bone morphology in threespine sticklebacks
-
15824312, . ().:–.
-
Kimmel CB, Ullmann B, Walker C, Wilson C, Currey M, et al. (2005) Evolution and development of facial bone morphology in threespine sticklebacks. Proc Natl Acad Sci U S A102: 5791–5796. 15824312
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 5791-5796
-
-
Kimmel, C.B.1
Ullmann, B.2
Walker, C.3
Wilson, C.4
Currey, M.5
-
84
-
-
34848853261
-
Parallel evolution of Pitx1 underlies pelvic reduction in Scottish threespine stickleback (Gasterosteus aculeatus)
-
17693397, ().:–.
-
Coyle SM, Huntingford FA, Peichel CL, (2007) Parallel evolution of Pitx1 underlies pelvic reduction in Scottish threespine stickleback (Gasterosteus aculeatus). J Hered98: 581–586. 17693397
-
(2007)
J Hered
, vol.98
, pp. 581-586
-
-
Coyle, S.M.1
Huntingford, F.A.2
Peichel, C.L.3
-
85
-
-
36849071407
-
cis-Regulatory changes in Kit ligand expression and parallel evolution of pigmentation in sticklebacks and humans
-
18083106, . ().:–.
-
Miller CT, Beleza S, Pollen AA, Schluter D, Kittles RA, et al. (2007) cis-Regulatory changes in Kit ligand expression and parallel evolution of pigmentation in sticklebacks and humans. Cell131: 1179–1189. 18083106
-
(2007)
Cell
, vol.131
, pp. 1179-1189
-
-
Miller, C.T.1
Beleza, S.2
Pollen, A.A.3
Schluter, D.4
Kittles, R.A.5
-
86
-
-
37749032917
-
The genetics of adaptive shape shift in stickleback: pleiotropy and effect size
-
18005154, . ().:–.
-
Albert AY, Sawaya S, Vines TH, Knecht AK, Miller CT, et al. (2008) The genetics of adaptive shape shift in stickleback: pleiotropy and effect size. Evolution62: 76–85. 18005154
-
(2008)
Evolution
, vol.62
, pp. 76-85
-
-
Albert, A.Y.1
Sawaya, S.2
Vines, T.H.3
Knecht, A.K.4
Miller, C.T.5
-
87
-
-
77957745240
-
From trait to base pairs: Parallel evolution of pelvic reduction in three-spined sticklebacks occurs by repeated deletion of a tissue-specific pelvic enhancer at Pitx1
-
. ().:–.
-
Chan YF, Villarreal G, Marks M, Shapiro M, Jones F, et al. (2009) From trait to base pairs: Parallel evolution of pelvic reduction in three-spined sticklebacks occurs by repeated deletion of a tissue-specific pelvic enhancer at Pitx1. Mech Develop126: S14–S15.
-
(2009)
Mech Develop
, vol.126
, pp. S14-S15
-
-
Chan, Y.F.1
Villarreal, G.2
Marks, M.3
Shapiro, M.4
Jones, F.5
-
88
-
-
79960697527
-
The genetic basis of divergent pigment patterns in juvenile threespine sticklebacks
-
21304547, . ().:–.
-
Greenwood AK, Jones FC, Chan YF, Brady SD, Absher DM, et al. (2011) The genetic basis of divergent pigment patterns in juvenile threespine sticklebacks. Heredity107: 155–166. doi: 10.1038/hdy.2011.121304547
-
(2011)
Heredity
, vol.107
, pp. 155-166
-
-
Greenwood, A.K.1
Jones, F.C.2
Chan, Y.F.3
Brady, S.D.4
Absher, D.M.5
-
89
-
-
84867666636
-
Admixture mapping of male nuptial colour and body shape in a recently formed hybrid population of threespine stickleback
-
22681397, ().:–.
-
Malek TB, Boughman JW, Dworkin I, Peichel CL, (2012) Admixture mapping of male nuptial colour and body shape in a recently formed hybrid population of threespine stickleback. Mol Ecol21: 5265–5279. doi: 10.1111/j.1365-294X.2012.05660.x22681397
-
(2012)
Mol Ecol
, vol.21
, pp. 5265-5279
-
-
Malek, T.B.1
Boughman, J.W.2
Dworkin, I.3
Peichel, C.L.4
-
90
-
-
84864322203
-
Genetic signature of adaptive peak shift in threespine stickleback
-
22834743, . ().:–.
-
Rogers SM, Tamkee P, Summers B, Balabahadra S, Marks M, et al. (2012) Genetic signature of adaptive peak shift in threespine stickleback. Evolution66: 2439–2450. doi: 10.1111/j.1558-5646.2012.01622.x22834743
-
(2012)
Evolution
, vol.66
, pp. 2439-2450
-
-
Rogers, S.M.1
Tamkee, P.2
Summers, B.3
Balabahadra, S.4
Marks, M.5
-
91
-
-
84883167399
-
Genetic architecture of variation in the lateral line sensory system of threespine sticklebacks
-
22973542, . ().:–.
-
Wark AR, Mills MG, Dang LH, Chan YF, Jones FC, et al. (2012) Genetic architecture of variation in the lateral line sensory system of threespine sticklebacks. G32: 1047–1056. doi: 10.1534/g3.112.00307922973542
-
(2012)
G3
, vol.2
, pp. 1047-1056
-
-
Wark, A.R.1
Mills, M.G.2
Dang, L.H.3
Chan, Y.F.4
Jones, F.C.5
-
92
-
-
84885318589
-
Genetic and neural modularity underlie the evolution of schooling behavior in threespine sticklebacks
-
24035541, ().:–.
-
Greenwood AK, Wark AR, Yoshida K, Peichel CL, (2013) Genetic and neural modularity underlie the evolution of schooling behavior in threespine sticklebacks. Curr Biol23: 1884–1888. doi: 10.1016/j.cub.2013.07.05824035541
-
(2013)
Curr Biol
, vol.23
, pp. 1884-1888
-
-
Greenwood, A.K.1
Wark, A.R.2
Yoshida, K.3
Peichel, C.L.4
-
93
-
-
84904507916
-
Genetics of ecological divergence during speciation
-
24909991, . ().:–.
-
Arnegard ME, McGee MD, Matthews B, Marchinko KB, Conte GL, et al. (2014) Genetics of ecological divergence during speciation. Nature511: 307–311. doi: 10.1038/nature1330124909991
-
(2014)
Nature
, vol.511
, pp. 307-311
-
-
Arnegard, M.E.1
McGee, M.D.2
Matthews, B.3
Marchinko, K.B.4
Conte, G.L.5
-
94
-
-
84901693332
-
Genetic architecture of skeletal evolution in European lake and stream stickleback
-
24571250, ().:–.
-
Berner D, Moser D, Roesti M, Buescher H, Salzburger W, (2014) Genetic architecture of skeletal evolution in European lake and stream stickleback. Evolution68: 1792–1805. doi: 10.1111/evo.1239024571250
-
(2014)
Evolution
, vol.68
, pp. 1792-1805
-
-
Berner, D.1
Moser, D.2
Roesti, M.3
Buescher, H.4
Salzburger, W.5
-
95
-
-
84898900381
-
Identification of major and minor QTL for ecologically important morphological traits in three-spined sticklebacks (Gasterosteus aculeatus)
-
24531726, . ().:–.
-
Liu J, Shikano T, Leinonen T, Cano JM, Li MH, et al. (2014) Identification of major and minor QTL for ecologically important morphological traits in three-spined sticklebacks (Gasterosteus aculeatus). G34: 595–604. doi: 10.1534/g3.114.01038924531726
-
(2014)
G3
, vol.4
, pp. 595-604
-
-
Liu, J.1
Shikano, T.2
Leinonen, T.3
Cano, J.M.4
Li, M.H.5
-
96
-
-
84901338544
-
Modular skeletal evolution in sticklebacks is controlled by additive and clustered quantitative trait Loci
-
24652999, . ().:–.
-
Miller CT, Glazer AM, Summers BR, Blackman BK, Norman AR, et al. (2014) Modular skeletal evolution in sticklebacks is controlled by additive and clustered quantitative trait Loci. Genetics197: 405–420. doi: 10.1534/genetics.114.16242024652999
-
(2014)
Genetics
, vol.197
, pp. 405-420
-
-
Miller, C.T.1
Glazer, A.M.2
Summers, B.R.3
Blackman, B.K.4
Norman, A.R.5
-
97
-
-
84907212410
-
Evolved tooth gain in sticklebacks is associated with a cis-regulatory allele of Bmp6
-
25205810, . ().:–.
-
Cleves PA, Ellis NA, Jimenez MT, Nunez SM, Schluter D, et al. (2014) Evolved tooth gain in sticklebacks is associated with a cis-regulatory allele of Bmp6. Proc Natl Acad Sci U S A111: 13912–13917. doi: 10.1073/pnas.140756711125205810
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 13912-13917
-
-
Cleves, P.A.1
Ellis, N.A.2
Jimenez, M.T.3
Nunez, S.M.4
Schluter, D.5
-
98
-
-
84901280416
-
Parallel developmental genetic features underlie stickleback gill raker evolution
-
24851181, ().:.
-
Glazer AM, Cleves PA, Erickson PA, Lam AY, Miller CT, (2014) Parallel developmental genetic features underlie stickleback gill raker evolution. Evodevo5: 19. doi: 10.1186/2041-9139-5-1924851181
-
(2014)
Evodevo
, vol.5
, pp. 19
-
-
Glazer, A.M.1
Cleves, P.A.2
Erickson, P.A.3
Lam, A.Y.4
Miller, C.T.5
-
99
-
-
85003045394
-
Two developmentally temporal quantitative trait loci underlie convergent evolution of increased branchial bone length in sticklebacks
-
24966315, ().:.
-
Erickson PA, Glazer AM, Cleves PA, Smith AS, Miller CT, (2014) Two developmentally temporal quantitative trait loci underlie convergent evolution of increased branchial bone length in sticklebacks. Proc Biol Sci281: 20140822. doi: 10.1098/rspb.2014.082224966315
-
(2014)
Proc Biol Sci
, vol.281
, pp. 20140822
-
-
Erickson, P.A.1
Glazer, A.M.2
Cleves, P.A.3
Smith, A.S.4
Miller, C.T.5
-
100
-
-
84937824356
-
Distinct developmental genetic mechanisms underlie convergently evolved tooth gain in sticklebacks
-
26062935, . ().:–.
-
Ellis NA, Glazer AM, Donde NN, Cleves PA, Agoglia RM, et al. (2015) Distinct developmental genetic mechanisms underlie convergently evolved tooth gain in sticklebacks. Development142: 2442–2451. doi: 10.1242/dev.12424826062935
-
(2015)
Development
, vol.142
, pp. 2442-2451
-
-
Ellis, N.A.1
Glazer, A.M.2
Donde, N.N.3
Cleves, P.A.4
Agoglia, R.M.5
-
101
-
-
84929292443
-
A 190 base pair, TGF-beta responsive tooth and fin enhancer is required for stickleback Bmp6 expression
-
25732776, . ().:–.
-
Erickson PA, Cleves PA, Ellis NA, Schwalbach KT, Hart JC, et al. (2015) A 190 base pair, TGF-beta responsive tooth and fin enhancer is required for stickleback Bmp6 expression. Dev Biol401: 310–323. doi: 10.1016/j.ydbio.2015.02.00625732776
-
(2015)
Dev Biol
, vol.401
, pp. 310-323
-
-
Erickson, P.A.1
Cleves, P.A.2
Ellis, N.A.3
Schwalbach, K.T.4
Hart, J.C.5
-
102
-
-
84937544080
-
Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing
-
().:–.
-
Glazer AM, Killingbeck EE, Mitros T, Rokhsar DS, Miller CT, (2015) Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing. G3 (Bethesda)5: 1463–1472.
-
(2015)
G3 (Bethesda)
, vol.5
, pp. 1463-1472
-
-
Glazer, A.M.1
Killingbeck, E.E.2
Mitros, T.3
Rokhsar, D.S.4
Miller, C.T.5
-
103
-
-
84929845103
-
Genetic mapping of natural variation in schooling tendency in the threespine stickleback
-
. ().:–.
-
Greenwood AK, Ardekani R, McCann SR, Dubin ME, Sullivan A, et al. (2015) Genetic mapping of natural variation in schooling tendency in the threespine stickleback. G3 (Bethesda)5: 761–769.
-
(2015)
G3 (Bethesda)
, vol.5
, pp. 761-769
-
-
Greenwood, A.K.1
Ardekani, R.2
McCann, S.R.3
Dubin, M.E.4
Sullivan, A.5
-
104
-
-
78651364359
-
ZFIN: enhancements and updates to the Zebrafish Model Organism Database
-
21036866, . ().:–.
-
Bradford Y, Conlin T, Dunn N, Fashena D, Frazer K, et al. (2011) ZFIN: enhancements and updates to the Zebrafish Model Organism Database. Nucleic Acids Res39: D822–829. doi: 10.1093/nar/gkq107721036866
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D822-829
-
-
Bradford, Y.1
Conlin, T.2
Dunn, N.3
Fashena, D.4
Frazer, K.5
-
105
-
-
84941044607
-
the HGNC resources in 2015
-
25361968, ().:–.
-
Gray KA, Yates B, Seal RL, Wright MW, Bruford EA, (2015) Genenames.org: the HGNC resources in 2015. Nucleic Acids Res43: D1079–1085. doi: 10.1093/nar/gku107125361968
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D1079-1085
-
-
Gray, K.A.1
Yates, B.2
Seal, R.L.3
Wright, M.W.4
Bruford, E.A.5
-
106
-
-
0036613512
-
Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development
-
12006978, . ().:–.
-
Golling G, Amsterdam A, Sun Z, Antonelli M, Maldonado E, et al. (2002) Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development. Nat Genet31: 135–140. 12006978
-
(2002)
Nat Genet
, vol.31
, pp. 135-140
-
-
Golling, G.1
Amsterdam, A.2
Sun, Z.3
Antonelli, M.4
Maldonado, E.5
-
107
-
-
79955805644
-
Growth plate regulation and osteochondroma formation: insights from tracing proteoglycans in zebrafish models and human cartilage
-
21506131, ().:–.
-
de Andrea CE, Prins FA, Wiweger MI, Hogendoorn PC, (2011) Growth plate regulation and osteochondroma formation: insights from tracing proteoglycans in zebrafish models and human cartilage. J Pathol224: 160–168. doi: 10.1002/path.288621506131
-
(2011)
J Pathol
, vol.224
, pp. 160-168
-
-
de Andrea, C.E.1
Prins, F.A.2
Wiweger, M.I.3
Hogendoorn, P.C.4
-
108
-
-
79551706241
-
Cartilage ultrastructure in proteoglycan-deficient zebrafish mutants brings to light new candidate genes for human skeletal disorders
-
21294126, . ().:–.
-
Wiweger MI, Avramut CM, de Andrea CE, Prins FA, Koster AJ, et al. (2011) Cartilage ultrastructure in proteoglycan-deficient zebrafish mutants brings to light new candidate genes for human skeletal disorders. J Pathol223: 531–542. doi: 10.1002/path.282421294126
-
(2011)
J Pathol
, vol.223
, pp. 531-542
-
-
Wiweger, M.I.1
Avramut, C.M.2
de Andrea, C.E.3
Prins, F.A.4
Koster, A.J.5
-
109
-
-
84866941195
-
On the roles and regulation of chondroitin sulfate and heparan sulfate in zebrafish pharyngeal cartilage morphogenesis
-
22869369, . ().:–.
-
Holmborn K, Habicher J, Kasza Z, Eriksson AS, Filipek-Gorniok B, et al. (2012) On the roles and regulation of chondroitin sulfate and heparan sulfate in zebrafish pharyngeal cartilage morphogenesis. J Biol Chem287: 33905–33916. 22869369
-
(2012)
J Biol Chem
, vol.287
, pp. 33905-33916
-
-
Holmborn, K.1
Habicher, J.2
Kasza, Z.3
Eriksson, A.S.4
Filipek-Gorniok, B.5
-
110
-
-
12644260470
-
Genetic analysis of fin formation in the zebrafish, Danio rerio
-
9007245, . ().:–.
-
van Eeden FJ, Granato M, Schach U, Brand M, Furutani-Seiki M, et al. (1996) Genetic analysis of fin formation in the zebrafish, Danio rerio. Development123: 255–262. 9007245
-
(1996)
Development
, vol.123
, pp. 255-262
-
-
van Eeden, F.J.1
Granato, M.2
Schach, U.3
Brand, M.4
Furutani-Seiki, M.5
-
111
-
-
0032533299
-
The shaping of pharyngeal cartilages during early development of the zebrafish
-
9808777, . ().:–.
-
Kimmel CB, Miller CT, Kruze G, Ullmann B, BreMiller RA, et al. (1998) The shaping of pharyngeal cartilages during early development of the zebrafish. Dev Biol203: 245–263. 9808777
-
(1998)
Dev Biol
, vol.203
, pp. 245-263
-
-
Kimmel, C.B.1
Miller, C.T.2
Kruze, G.3
Ullmann, B.4
BreMiller, R.A.5
-
112
-
-
0037384993
-
Endothelin 1-mediated regulation of pharyngeal bone development in zebrafish
-
12588850, ().:–.
-
Kimmel CB, Ullmann B, Walker M, Miller CT, Crump JG, (2003) Endothelin 1-mediated regulation of pharyngeal bone development in zebrafish. Development130: 1339–1351. 12588850
-
(2003)
Development
, vol.130
, pp. 1339-1351
-
-
Kimmel, C.B.1
Ullmann, B.2
Walker, M.3
Miller, C.T.4
Crump, J.G.5
-
113
-
-
33947159616
-
phospholipase C, beta 3 is required for Endothelin1 regulation of pharyngeal arch patterning in zebrafish
-
17239364, ().:–.
-
Walker MB, Miller CT, Swartz ME, Eberhart JK, Kimmel CB, (2007) phospholipase C, beta 3 is required for Endothelin1 regulation of pharyngeal arch patterning in zebrafish. Dev Biol304: 194–207. 17239364
-
(2007)
Dev Biol
, vol.304
, pp. 194-207
-
-
Walker, M.B.1
Miller, C.T.2
Swartz, M.E.3
Eberhart, J.K.4
Kimmel, C.B.5
-
114
-
-
69049095026
-
Control of extracellular matrix assembly along tissue boundaries via Integrin and Eph/Ephrin signaling
-
19641014, ().:–.
-
Julich D, Mould AP, Koper E, Holley SA, (2009) Control of extracellular matrix assembly along tissue boundaries via Integrin and Eph/Ephrin signaling. Development136: 2913–2921. doi: 10.1242/dev.03893519641014
-
(2009)
Development
, vol.136
, pp. 2913-2921
-
-
Julich, D.1
Mould, A.P.2
Koper, E.3
Holley, S.A.4
-
115
-
-
84871191358
-
Integrin alpha5/fibronectin1 and focal adhesion kinase are required for lens fiber morphogenesis in zebrafish
-
23097490, . ().:–.
-
Hayes JM, Hartsock A, Clark BS, Napier HR, Link BA, et al. (2012) Integrin alpha5/fibronectin1 and focal adhesion kinase are required for lens fiber morphogenesis in zebrafish. Mol Biol Cell23: 4725–4738. doi: 10.1091/mbc.E12-09-067223097490
-
(2012)
Mol Biol Cell
, vol.23
, pp. 4725-4738
-
-
Hayes, J.M.1
Hartsock, A.2
Clark, B.S.3
Napier, H.R.4
Link, B.A.5
-
116
-
-
84922325674
-
Dosage changes of a segment at 17p13.1 lead to intellectual disability and microcephaly as a result of complex genetic interaction of multiple genes
-
25439725, . ().:–.
-
Carvalho CM, Vasanth S, Shinawi M, Russell C, Ramocki MB, et al. (2014) Dosage changes of a segment at 17p13.1 lead to intellectual disability and microcephaly as a result of complex genetic interaction of multiple genes. Am J Hum Genet95: 565–578. doi: 10.1016/j.ajhg.2014.10.00625439725
-
(2014)
Am J Hum Genet
, vol.95
, pp. 565-578
-
-
Carvalho, C.M.1
Vasanth, S.2
Shinawi, M.3
Russell, C.4
Ramocki, M.B.5
-
117
-
-
85027919816
-
PI4K2beta/AP-1-based TGN-endosomal sorting regulates Wnt signaling
-
24206846, . ().:–.
-
Wieffer M, Cibrian Uhalte E, Posor Y, Otten C, Branz K, et al. (2013) PI4K2beta/AP-1-based TGN-endosomal sorting regulates Wnt signaling. Curr Biol23: 2185–2190. doi: 10.1016/j.cub.2013.09.01724206846
-
(2013)
Curr Biol
, vol.23
, pp. 2185-2190
-
-
Wieffer, M.1
Cibrian, U.E.2
Posor, Y.3
Otten, C.4
Branz, K.5
-
118
-
-
79958187875
-
Nrdp1 governs differentiation of the melanocyte lineage via Erbb3b signaling in the zebrafish embryogenesis
-
21596016, ().:–.
-
Maddirevula S, Anuppalle M, Huh TL, Kim SH, Rhee M, (2011) Nrdp1 governs differentiation of the melanocyte lineage via Erbb3b signaling in the zebrafish embryogenesis. Biochem Biophys Res Commun409: 454–458. doi: 10.1016/j.bbrc.2011.05.02521596016
-
(2011)
Biochem Biophys Res Commun
, vol.409
, pp. 454-458
-
-
Maddirevula, S.1
Anuppalle, M.2
Huh, T.L.3
Kim, S.H.4
Rhee, M.5
-
119
-
-
77952354471
-
Genetic analysis of fin development in zebrafish identifies furin and hemicentin1 as potential novel fraser syndrome disease genes
-
20419147, . ().:.
-
Carney TJ, Feitosa NM, Sonntag C, Slanchev K, Kluger J, et al. (2010) Genetic analysis of fin development in zebrafish identifies furin and hemicentin1 as potential novel fraser syndrome disease genes. PLoS Genet6: e1000907. doi: 10.1371/journal.pgen.100090720419147
-
(2010)
PLoS Genet
, vol.6
, pp. e1000907
-
-
Carney, T.J.1
Feitosa, N.M.2
Sonntag, C.3
Slanchev, K.4
Kluger, J.5
-
120
-
-
42749084464
-
Mutation in the human homeobox gene NKX5-3 causes an oculo-auricular syndrome
-
18423520, . ().:–.
-
Schorderet DF, Nichini O, Boisset G, Polok B, Tiab L, et al. (2008) Mutation in the human homeobox gene NKX5-3 causes an oculo-auricular syndrome. Am J Hum Genet82: 1178–1184. doi: 10.1016/j.ajhg.2008.03.00718423520
-
(2008)
Am J Hum Genet
, vol.82
, pp. 1178-1184
-
-
Schorderet, D.F.1
Nichini, O.2
Boisset, G.3
Polok, B.4
Tiab, L.5
-
121
-
-
84868491261
-
Zebrafish hmx1 promotes retinogenesis
-
23068565, ().:–.
-
Boisset G, Schorderet DF, (2012) Zebrafish hmx1 promotes retinogenesis. Exp Eye Res105: 34–42. doi: 10.1016/j.exer.2012.10.00223068565
-
(2012)
Exp Eye Res
, vol.105
, pp. 34-42
-
-
Boisset, G.1
Schorderet, D.F.2
-
122
-
-
78651440103
-
Alternative developmental pathways and the propensity to migrate: a case study in the Atlantic salmon
-
21044203, . ().:–.
-
Paez DJ, Brisson-Bonenfant C, Rossignol O, Guderley HE, Bernatchez L, et al. (2011) Alternative developmental pathways and the propensity to migrate: a case study in the Atlantic salmon. J Evol Biol24: 245–255. doi: 10.1111/j.1420-9101.2010.02159.x21044203
-
(2011)
J Evol Biol
, vol.24
, pp. 245-255
-
-
Paez, D.J.1
Brisson-Bonenfant, C.2
Rossignol, O.3
Guderley, H.E.4
Bernatchez, L.5
-
123
-
-
2442675456
-
Evidence for ecology's role in speciation
-
15152252, . ().:–.
-
McKinnon JS, Mori S, Blackman BK, David L, Kingsley DM, et al. (2004) Evidence for ecology's role in speciation. Nature429: 294–298. 15152252
-
(2004)
Nature
, vol.429
, pp. 294-298
-
-
McKinnon, J.S.1
Mori, S.2
Blackman, B.K.3
David, L.4
Kingsley, D.M.5
-
124
-
-
40849145949
-
Hitchhiking mapping reveals a candidate genomic region for natural selection in three-spined stickleback chromosome VIII
-
18202387, ().:–.
-
Makinen HS, Shikano T, Cano JM, Merila J, (2008) Hitchhiking mapping reveals a candidate genomic region for natural selection in three-spined stickleback chromosome VIII. Genetics178: 453–465. doi: 10.1534/genetics.107.07878218202387
-
(2008)
Genetics
, vol.178
, pp. 453-465
-
-
Makinen, H.S.1
Shikano, T.2
Cano, J.M.3
Merila, J.4
-
125
-
-
47649114360
-
Identifying footprints of directional and balancing selection in marine and freshwater three-spined stickleback (Gasterosteus aculeatus) populations
-
18312551, ().:–.
-
Makinen HS, Cano JM, Merila J, (2008) Identifying footprints of directional and balancing selection in marine and freshwater three-spined stickleback (Gasterosteus aculeatus) populations. Mol Ecol17: 3565–3582. doi: 10.1111/j.1365-294X.2008.03714.x18312551
-
(2008)
Mol Ecol
, vol.17
, pp. 3565-3582
-
-
Makinen, H.S.1
Cano, J.M.2
Merila, J.3
-
126
-
-
78650107391
-
Adaptive divergence in the thyroid hormone signaling pathway in the stickleback radiation
-
21093265, . ().:–.
-
Kitano J, Lema SC, Luckenbach JA, Mori S, Kawagishi Y, et al. (2010) Adaptive divergence in the thyroid hormone signaling pathway in the stickleback radiation. Curr Biol20: 2124–2130. doi: 10.1016/j.cub.2010.10.05021093265
-
(2010)
Curr Biol
, vol.20
, pp. 2124-2130
-
-
Kitano, J.1
Lema, S.C.2
Luckenbach, J.A.3
Mori, S.4
Kawagishi, Y.5
-
127
-
-
79958024366
-
Global analysis of genes involved in freshwater adaptation in threespine sticklebacks (Gasterosteus aculeatus)
-
21644964, ().:–.
-
DeFaveri J, Shikano T, Shimada Y, Goto A, Merila J, (2011) Global analysis of genes involved in freshwater adaptation in threespine sticklebacks (Gasterosteus aculeatus). Evolution65: 1800–1807. doi: 10.1111/j.1558-5646.2011.01247.x21644964
-
(2011)
Evolution
, vol.65
, pp. 1800-1807
-
-
DeFaveri, J.1
Shikano, T.2
Shimada, Y.3
Goto, A.4
Merila, J.5
-
128
-
-
78650468891
-
A high incidence of selection on physiologically important genes in the three-spined stickleback, Gasterosteus aculeatus
-
20660084, ().:–.
-
Shimada Y, Shikano T, Merila J, (2011) A high incidence of selection on physiologically important genes in the three-spined stickleback, Gasterosteus aculeatus. Mol Biol Evol28: 181–193. doi: 10.1093/molbev/msq18120660084
-
(2011)
Mol Biol Evol
, vol.28
, pp. 181-193
-
-
Shimada, Y.1
Shikano, T.2
Merila, J.3
-
129
-
-
84863592418
-
Molecular and developmental contributions to divergent pigment patterns in marine and freshwater sticklebacks
-
22765206, ().:–.
-
Greenwood AK, Cech JN, Peichel CL, (2012) Molecular and developmental contributions to divergent pigment patterns in marine and freshwater sticklebacks. Evol Dev14: 351–362. doi: 10.1111/j.1525-142X.2012.00553.x22765206
-
(2012)
Evol Dev
, vol.14
, pp. 351-362
-
-
Greenwood, A.K.1
Cech, J.N.2
Peichel, C.L.3
-
130
-
-
84856270961
-
Parallel and nonparallel aspects of ecological, phenotypic, and genetic divergence across replicate population pairs of lake and stream stickleback
-
22276537, ().:–.
-
Kaeuffer R, Peichel CL, Bolnick DI, Hendry AP, (2012) Parallel and nonparallel aspects of ecological, phenotypic, and genetic divergence across replicate population pairs of lake and stream stickleback. Evolution66: 402–418. doi: 10.1111/j.1558-5646.2011.01440.x22276537
-
(2012)
Evolution
, vol.66
, pp. 402-418
-
-
Kaeuffer, R.1
Peichel, C.L.2
Bolnick, D.I.3
Hendry, A.P.4
-
131
-
-
84875527393
-
RNA sequencing reveals small RNAs differentially expressed between incipient Japanese threespine sticklebacks
-
23547919, ().:.
-
Kitano J, Yoshida K, Suzuki Y, (2013) RNA sequencing reveals small RNAs differentially expressed between incipient Japanese threespine sticklebacks. BMC Genomics14: 214. doi: 10.1186/1471-2164-14-21423547919
-
(2013)
BMC Genomics
, vol.14
, pp. 214
-
-
Kitano, J.1
Yoshida, K.2
Suzuki, Y.3
-
132
-
-
84928524608
-
Population genomic evidence for adaptive differentiation in Baltic Sea three-spined sticklebacks
-
25857931, ().:.
-
Guo B, DeFaveri J, Sotelo G, Nair A, Merila J, (2015) Population genomic evidence for adaptive differentiation in Baltic Sea three-spined sticklebacks. BMC Biol13: 19. doi: 10.1186/s12915-015-0130-825857931
-
(2015)
BMC Biol
, vol.13
, pp. 19
-
-
Guo, B.1
DeFaveri, J.2
Sotelo, G.3
Nair, A.4
Merila, J.5
-
133
-
-
0026565123
-
Ecological character displacement and speciation in sticklebacks
-
19426066, ().:–.
-
Schluter D, McPhail JD, (1992) Ecological character displacement and speciation in sticklebacks. Am Nat140: 85–108. doi: 10.1086/28540419426066
-
(1992)
Am Nat
, vol.140
, pp. 85-108
-
-
Schluter, D.1
McPhail, J.D.2
-
134
-
-
0033955524
-
Natural selection and parallel speciation in sympatric sticklebacks
-
10634785, ().:–.
-
Rundle HD, Nagel L, Wenrick Boughman J, Schluter D, (2000) Natural selection and parallel speciation in sympatric sticklebacks. Science287: 306–308. 10634785
-
(2000)
Science
, vol.287
, pp. 306-308
-
-
Rundle, H.D.1
Nagel, L.2
Wenrick, B.J.3
Schluter, D.4
-
135
-
-
0035927744
-
Divergent sexual selection enhances reproductive isolation in sticklebacks
-
11418857, ().:–.
-
Boughman JW, (2001) Divergent sexual selection enhances reproductive isolation in sticklebacks. Nature411: 944–948. 11418857
-
(2001)
Nature
, vol.411
, pp. 944-948
-
-
Boughman, J.W.1
-
136
-
-
0000689932
-
Glacial Refugia, Endemism, and Stickleback Populations of Queen Charlotte Islands, British-Columbia
-
().:–.
-
Moodie GEE, Reimchen TE, (1976) Glacial Refugia, Endemism, and Stickleback Populations of Queen Charlotte Islands, British-Columbia. Canadian Field-Naturalist90: 471–474.
-
(1976)
Canadian Field-Naturalist
, vol.90
, pp. 471-474
-
-
Moodie, G.E.E.1
Reimchen, T.E.2
-
137
-
-
0000192554
-
Mitochondrial-DNA in Gasterosteus and Pleistocene Glacial Refugium on the Queen-Charlotte-Islands, British-Columbia
-
().:–.
-
Oreilly P, Reimchen TE, Beech R, Strobeck C, (1993) Mitochondrial-DNA in Gasterosteus and Pleistocene Glacial Refugium on the Queen-Charlotte-Islands, British-Columbia. Evolution47: 678–684.
-
(1993)
Evolution
, vol.47
, pp. 678-684
-
-
Oreilly, P.1
Reimchen, T.E.2
Beech, R.3
Strobeck, C.4
-
138
-
-
84875364944
-
Phylogeography and adaptation genetics of stickleback from the Haida Gwaii archipelago revealed using genome-wide single nucleotide polymorphism genotyping
-
23452150, ().:–.
-
Deagle BE, Jones FC, Absher DM, Kingsley DM, Reimchen TE, (2013) Phylogeography and adaptation genetics of stickleback from the Haida Gwaii archipelago revealed using genome-wide single nucleotide polymorphism genotyping. Molecular Ecology22: 1917–1932. doi: 10.1111/mec.1221523452150
-
(2013)
Molecular Ecology
, vol.22
, pp. 1917-1932
-
-
Deagle, B.E.1
Jones, F.C.2
Absher, D.M.3
Kingsley, D.M.4
Reimchen, T.E.5
-
139
-
-
84855708550
-
A Genome-wide SNP Genotyping Array Reveals Patterns of Global and Repeated Species-Pair Divergence in Sticklebacks
-
22197244, . ().:–.
-
Jones FC, Chan YF, Schmutz J, Grimwood J, Brady SD, et al. (2012) A Genome-wide SNP Genotyping Array Reveals Patterns of Global and Repeated Species-Pair Divergence in Sticklebacks. Current Biology22: 83–90. doi: 10.1016/j.cub.2011.11.04522197244
-
(2012)
Current Biology
, vol.22
, pp. 83-90
-
-
Jones, F.C.1
Chan, Y.F.2
Schmutz, J.3
Grimwood, J.4
Brady, S.D.5
-
140
-
-
70450248380
-
Parallels, nonparallels, and plasticity in population differentiation of threespine stickleback within a lake
-
().:–.
-
Olafsdottir GA, Snorrason SS, (2009) Parallels, nonparallels, and plasticity in population differentiation of threespine stickleback within a lake. Biol J Linn Soc98: 803–813.
-
(2009)
Biol J Linn Soc
, vol.98
, pp. 803-813
-
-
Olafsdottir, G.A.1
Snorrason, S.S.2
-
141
-
-
84875364944
-
Phylogeography and adaptation genetics of stickleback from the Haida Gwaii archipelago revealed using genome-wide single nucleotide polymorphism genotyping
-
23452150, ().:–.
-
Deagle BE, Jones FC, Absher DM, Kingsley DM, Reimchen TE, (2013) Phylogeography and adaptation genetics of stickleback from the Haida Gwaii archipelago revealed using genome-wide single nucleotide polymorphism genotyping. Mol Ecol22: 1917–1932. doi: 10.1111/mec.1221523452150
-
(2013)
Mol Ecol
, vol.22
, pp. 1917-1932
-
-
Deagle, B.E.1
Jones, F.C.2
Absher, D.M.3
Kingsley, D.M.4
Reimchen, T.E.5
-
142
-
-
84906942500
-
Quick divergence but slow convergence during ecotype formation in lake and stream stickleback pairs of variable age
-
24976108, ().:–.
-
Lucek K, Sivasundar A, Kristjansson BK, Skulason S, Seehausen O, (2014) Quick divergence but slow convergence during ecotype formation in lake and stream stickleback pairs of variable age. J Evol Biol27: 1878–1892. doi: 10.1111/jeb.1243924976108
-
(2014)
J Evol Biol
, vol.27
, pp. 1878-1892
-
-
Lucek, K.1
Sivasundar, A.2
Kristjansson, B.K.3
Skulason, S.4
Seehausen, O.5
-
143
-
-
0002813649
-
Phenetic Variation and Habitat Differences in Gasterosteus Populations of Queen Charlotte Islands
-
().:–.
-
Moodie GEE, Reimchen TE, (1976) Phenetic Variation and Habitat Differences in Gasterosteus Populations of Queen Charlotte Islands. Syst Zool25: 49–61.
-
(1976)
Syst Zool
, vol.25
, pp. 49-61
-
-
Moodie, G.E.E.1
Reimchen, T.E.2
-
144
-
-
0000942989
-
Multivariate Differentiation of Parapatric and Allopatric Populations of Threespine Stickleback in the Sangan River Watershed, Queen-Charlotte-Islands
-
().:–.
-
Reimchen TE, Stinson EM, Nelson JS, (1985) Multivariate Differentiation of Parapatric and Allopatric Populations of Threespine Stickleback in the Sangan River Watershed, Queen-Charlotte-Islands. Can J Zool63: 2944–2951.
-
(1985)
Can J Zool
, vol.63
, pp. 2944-2951
-
-
Reimchen, T.E.1
Stinson, E.M.2
Nelson, J.S.3
-
145
-
-
84879618489
-
Natural selection and the adaptive radiation of Haida Gwaii stickleback
-
().:–.
-
Reimchen TE, Bergstrom C, Nosil P, (2013) Natural selection and the adaptive radiation of Haida Gwaii stickleback. Evol Ecol Res15: 241–269.
-
(2013)
Evol Ecol Res
, vol.15
, pp. 241-269
-
-
Reimchen, T.E.1
Bergstrom, C.2
Nosil, P.3
-
146
-
-
84869116803
-
The probability of genetic parallelism and convergence in natural populations
-
23075840, ().:–.
-
Conte GL, Arnegard ME, Peichel CL, Schluter D, (2012) The probability of genetic parallelism and convergence in natural populations. Proc Biol Sci279: 5039–5047. doi: 10.1098/rspb.2012.214623075840
-
(2012)
Proc Biol Sci
, vol.279
, pp. 5039-5047
-
-
Conte, G.L.1
Arnegard, M.E.2
Peichel, C.L.3
Schluter, D.4
-
147
-
-
68249097999
-
Phenotype-dependent native habitat preference facilitates divergence between parapatric lake and stream stickleback
-
19473386, . ().:–.
-
Bolnick DI, Snowberg LK, Patenia C, Stutz WE, Ingram T, et al. (2009) Phenotype-dependent native habitat preference facilitates divergence between parapatric lake and stream stickleback. Evolution63: 2004–2016. doi: 10.1111/j.1558-5646.2009.00699.x19473386
-
(2009)
Evolution
, vol.63
, pp. 2004-2016
-
-
Bolnick, D.I.1
Snowberg, L.K.2
Patenia, C.3
Stutz, W.E.4
Ingram, T.5
-
148
-
-
67650281518
-
Genetics and ecological speciation
-
19528639, ().:–.
-
Schluter D, Conte GL, (2009) Genetics and ecological speciation. Proc Natl Acad Sci U S A106Suppl 1: 9955–9962. doi: 10.1073/pnas.090126410619528639
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 9955-9962
-
-
Schluter, D.1
Conte, G.L.2
-
149
-
-
84863205849
-
NIH Image to ImageJ: 25 years of image analysis
-
22930834, ().:–.
-
Schneider CA, Rasband WS, Eliceiri KW, (2012) NIH Image to ImageJ: 25 years of image analysis. Nat Methods9: 671–675. 22930834
-
(2012)
Nat Methods
, vol.9
, pp. 671-675
-
-
Schneider, C.A.1
Rasband, W.S.2
Eliceiri, K.W.3
-
150
-
-
84863956368
-
When phenotypes do not match genotypes—unexpected phenotypic diversity and potential environmental constraints in Icelandic stickleback
-
22563124, ().:–.
-
Lucek K, Haesler MP, Sivasundar A, (2012) When phenotypes do not match genotypes—unexpected phenotypic diversity and potential environmental constraints in Icelandic stickleback. J Hered103: 579–584. doi: 10.1093/jhered/ess02122563124
-
(2012)
J Hered
, vol.103
, pp. 579-584
-
-
Lucek, K.1
Haesler, M.P.2
Sivasundar, A.3
-
151
-
-
54449098752
-
Rapid SNP discovery and genetic mapping using sequenced RAD markers
-
18852878, . ().:.
-
Baird NA, Etter PD, Atwood TS, Currey MC, Shiver AL, et al. (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One3: e3376. doi: 10.1371/journal.pone.000337618852878
-
(2008)
PLoS One
, vol.3
, pp. e3376
-
-
Baird, N.A.1
Etter, P.D.2
Atwood, T.S.3
Currey, M.C.4
Shiver, A.L.5
-
152
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
22388286, ().:–.
-
Langmead B, Salzberg SL, (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods9: 357–359. doi: 10.1038/nmeth.192322388286
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
153
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
19505943, . ().:–.
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, et al. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics25: 2078–2079. doi: 10.1093/bioinformatics/btp35219505943
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
-
154
-
-
0017367852
-
Nucleotide sequence of bacteriophage phi X174 DNA
-
870828, . ().:–.
-
Sanger F, Air GM, Barrell BG, Brown NL, Coulson AR, et al. (1977) Nucleotide sequence of bacteriophage phi X174 DNA. Nature265: 687–695. 870828
-
(1977)
Nature
, vol.265
, pp. 687-695
-
-
Sanger, F.1
Air, G.M.2
Barrell, B.G.3
Brown, N.L.4
Coulson, A.R.5
-
155
-
-
77956295988
-
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
-
20644199, . ().:–.
-
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, et al. (2010) The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res20: 1297–1303. doi: 10.1101/gr.107524.11020644199
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
-
156
-
-
79960405019
-
The variant call format and VCFtools
-
21653522, . ().:–.
-
Danecek P, Auton A, Abecasis G, Albers CA, Banks E, et al. (2011) The variant call format and VCFtools. Bioinformatics27: 2156–2158. doi: 10.1093/bioinformatics/btr33021653522
-
(2011)
Bioinformatics
, vol.27
, pp. 2156-2158
-
-
Danecek, P.1
Auton, A.2
Abecasis, G.3
Albers, C.A.4
Banks, E.5
-
157
-
-
79955609628
-
Linkage Mapping and Comparative Genomics Using Next-Generation RAD Sequencing of a Non-Model Organism
-
. ().
-
Baxter SW, Davey JW, Johnston JS, Shelton AM, Heckel DG, et al. (2011) Linkage Mapping and Comparative Genomics Using Next-Generation RAD Sequencing of a Non-Model Organism. Plos One6.
-
(2011)
Plos One
, vol.6
-
-
Baxter, S.W.1
Davey, J.W.2
Johnston, J.S.3
Shelton, A.M.4
Heckel, D.G.5
-
158
-
-
79959435199
-
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
-
21681211, . ().:–.
-
Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, et al. (2011) Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nature Reviews Genetics12: 499–510. doi: 10.1038/nrg301221681211
-
(2011)
Nature Reviews Genetics
, vol.12
, pp. 499-510
-
-
Davey, J.W.1
Hohenlohe, P.A.2
Etter, P.D.3
Boone, J.Q.4
Catchen, J.M.5
-
159
-
-
77953032930
-
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
-
21565059, ().:–.
-
Excoffier L, Lischer HE, (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour10: 564–567. doi: 10.1111/j.1755-0998.2010.02847.x21565059
-
(2010)
Mol Ecol Resour
, vol.10
, pp. 564-567
-
-
Excoffier, L.1
Lischer, H.E.2
-
160
-
-
84856088655
-
PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs
-
22110245, ().:–.
-
Lischer HE, Excoffier L, (2012) PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs. Bioinformatics28: 298–299. doi: 10.1093/bioinformatics/btr64222110245
-
(2012)
Bioinformatics
, vol.28
, pp. 298-299
-
-
Lischer, H.E.1
Excoffier, L.2
-
161
-
-
80054949793
-
adegenet 1.3–1: new tools for the analysis of genome-wide SNP data
-
21926124, ().:–.
-
Jombart T, Ahmed I, (2011) adegenet 1.3–1: new tools for the analysis of genome-wide SNP data. Bioinformatics27: 3070–3071. doi: 10.1093/bioinformatics/btr52121926124
-
(2011)
Bioinformatics
, vol.27
, pp. 3070-3071
-
-
Jombart, T.1
Ahmed, I.2
-
162
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
10835412, ().:–.
-
Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data. Genetics155: 945–959. 10835412
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
163
-
-
0041817568
-
Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
-
12930761, ().:–.
-
Falush D, Stephens M, Pritchard JK, (2003) Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics164: 1567–1587. 12930761
-
(2003)
Genetics
, vol.164
, pp. 1567-1587
-
-
Falush, D.1
Stephens, M.2
Pritchard, J.K.3
-
164
-
-
21244479740
-
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
-
15969739, ().:–.
-
Evanno G, Regnaut S, Goudet J, (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol14: 2611–2620. 15969739
-
(2005)
Mol Ecol
, vol.14
, pp. 2611-2620
-
-
Evanno, G.1
Regnaut, S.2
Goudet, J.3
-
165
-
-
70349506039
-
Detecting loci under selection in a hierarchically structured population
-
19623208, ().:–.
-
Excoffier L, Hofer T, Foll M, (2009) Detecting loci under selection in a hierarchically structured population. Heredity103: 285–298. doi: 10.1038/hdy.2009.7419623208
-
(2009)
Heredity
, vol.103
, pp. 285-298
-
-
Excoffier, L.1
Hofer, T.2
Foll, M.3
-
166
-
-
84862564389
-
Uninformative polymorphisms bias genome scans for signatures of selection
-
22726891, ().:.
-
Roesti M, Salzburger W, Berner D, (2012) Uninformative polymorphisms bias genome scans for signatures of selection. BMC Evol Biol12: 94. doi: 10.1186/1471-2148-12-9422726891
-
(2012)
BMC Evol Biol
, vol.12
, pp. 94
-
-
Roesti, M.1
Salzburger, W.2
Berner, D.3
-
167
-
-
34548292504
-
PLINK: a tool set for whole-genome association and population-based linkage analyses
-
17701901, . ().:–.
-
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet81: 559–575. 17701901
-
(2007)
Am J Hum Genet
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ferreira, M.A.5
-
168
-
-
0035865094
-
Comparison of human genetic and sequence-based physical maps
-
11237020, . ().:–.
-
Yu A, Zhao C, Fan Y, Jang W, Mungall AJ, et al. (2001) Comparison of human genetic and sequence-based physical maps. Nature409: 951–953. 11237020
-
(2001)
Nature
, vol.409
, pp. 951-953
-
-
Yu, A.1
Zhao, C.2
Fan, Y.3
Jang, W.4
Mungall, A.J.5
-
169
-
-
33644874573
-
The UCSC Genome Browser Database: update 2006
-
16381938, . ().:–.
-
Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, et al. (2006) The UCSC Genome Browser Database: update 2006. Nucleic Acids Res34: D590–598. 16381938
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D590-598
-
-
Hinrichs, A.S.1
Karolchik, D.2
Baertsch, R.3
Barber, G.P.4
Bejerano, G.5
-
170
-
-
84876515907
-
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
-
23203871, . ().:–.
-
Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, et al. (2013) STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res41: D808–815. doi: 10.1093/nar/gks109423203871
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D808-815
-
-
Franceschini, A.1
Szklarczyk, D.2
Frankild, S.3
Kuhn, M.4
Simonovic, M.5
-
171
-
-
84959926025
-
-
().:.
-
R Development Core Team (2013) R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
-
(2013)
-
-
|