The genetic mosaic suggests a new role for hitchhiking in ecological speciation

Molecular Ecology

Volumn 17, Issue 19, 2008, Pages 4334-4345

  Via, Sara ^a   West, Joan ^a  

^a University of Maryland   (United States)

Author keywords

Ecological speciation; FST outlier; Genetics of speciation; Host races; Sympatric hitchhiking

Indexed keywords

ANIMAL; APHID; ARTICLE; BIOLOGICAL MODEL; CHROMOSOME MAP; ECOSYSTEM; GENE FLOW; GENE FREQUENCY; GENETIC MARKER; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; MOSAICISM; PARASITOLOGY; PEA; PHYSIOLOGY; QUANTITATIVE TRAIT LOCUS; REPRODUCTION;

ANIMALS; APHIDS; CHROMOSOME MAPPING; ECOSYSTEM; GENE FLOW; GENE FREQUENCY; GENETIC MARKERS; GENETIC VARIATION; MODELS, GENETIC; MOSAICISM; PEAS; QUANTITATIVE TRAIT LOCI; REPRODUCTION; SELECTION (GENETICS);

EID: 52649091697     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2008.03921.x     Document Type: Article

References (72)

1. Avise JC (2000) Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, Massachusetts.
2. Barton NH (2000) Genetic hitchhiking. Philosophical Transactions of the Royal Society B: Biological Sciences, 355, 1553 1562.
3. Barton NH, Gale KS (1993) Genetic analysis of hybrid zones. In : Hybrid Zones and the Evolutionary Process (ed. Harrison RG pp. 13 45. Oxford University Press, Oxford, UK.
4. ST tell us? Trends in Ecology & Evolution, 20, 435 440.
5. Beaumont MA, Balding DJ (2004) Identifying adaptive genetic divergence among populations from genome scans. Molecular Ecology, 13, 969 980.
6. Beaumont MA, Nichols RA (1996) Evaluating loci for use in the genetic analysis of population structure. Proceedings of the Royal Society B: Biological Sciences, 263, 1619 1626.
7. Begun DJ, Aquadro CF (1992) Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature, 356, 519 520.
8. Beltran M, Jiggins CD, Bull V et al 2002) Phylogenetic discordance at the species boundary: comparative gene genealogies among rapidly radiating Heliconius butterflies. Molecular Biology and Evolution, 19, 2176 2190.
9. Birkle L, Douglas AE (1999) Low genetic diversity among pea aphid (Acyrthosiphon pisum) biotypes of different plant affiliation. Heredity, 82, 605 612.
10. Bonin A, Taberlet P, Miaud C, Pompanon F (2006) Explorative genome scan to detect candidate loci for adaptation along a gradient of altitude in the common frog (Rana temporaria). Molecular Biology and Evolution, 23, 773 783.
11. Boulding EG (1998) Molecular evidence against phylogenetically distinct host races of the pea aphid (Acyrthosiphon pisum). Genome, 41, 769 775.
12. Bradshaw HD Jr., Schemske DW (2003) Allele substitution at a flower color locus produces a pollinator shift in two monkeyflower species (Mimulus). Nature, 426, 176 178.
13. Bush GL (1994) Sympatric speciation in animals: new wine in old bottles. Trends in Ecology & Evolution, 9, 285 288.
14. Campbell D, Bernatchez L (2004) Generic scan using AFLP markers as a means to asses the role of directional selection in the divergence of sympatric whitefish ecotypes. Molecular Biology and Evolution, 21, 945 956.
15. Cavalli-Sforza LL (1966) Population structure and human evolution. Royal Society of London, B, 164, 362 369.
16. Charlesworth B (1998) Measures of divergence between populations and the effect of forces that reduce variability. Molecular Biology and Evolution, 15, 538 543.
17. Charlesworth B, Nordborg M, Charlesworth D (1997) The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations. Genetical Research, 70, 155 174.
18. Coyne JA, Orr HA (2004) Speciation. Sinauer Associates, Sunderland, Massachusetts.
19. Dobzhansky T (1937) Genetics and the Origins of Species. Columbia University Press, New York.
20. Dopman EB, Perez L, Bogdanowicz SM, Harrison RG (2005) Consequences of reproductive barriers for genealogical discordance in the European corn borer. Proceedings of the National Academy of Sciences, USA, 102, 14706 14711.
21. Emelianov I, Marec F, Mallet J (2004) Genomic evidence for divergence with gene flow in host races of the larch budmoth. Proceedings of the Royal Society B: Biological Sciences, 271, 97 105.
22. Felsenstein J (1981) Skepticism toward Santa Rosalia, or why are there so few kinds of animals? Evolution, 35, 124 138.
23. Felsenstein J (2004) phylip.Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, Washington.
24. Ferrari J, Godfray CHJ, Faulconbridge AS, Prior K, Via S (2007) Population differentiation and genetic variation in host choice among pea aphids from eight host plant genera. Evolution, 60, 1574 1584.
25. Harr B (2006) Genomic islands of differentiation between house mouse subspecies. Genome Research, 16, 730 737.
26. Hawthorne DJ, Via S (2001) Genetic linkage facilitates ecological specialization and reproductive isolation in pea aphids. Nature, 412, 904 907.
27. Howard DJ, Berlocher SH, eds 1998) Endless Forms: Species and Speciation. Oxford University Press, New York.
28. Lewontin RC, Krakauer J (1973) Distribution of gene frequency as a test of the theory of selective neutrality of polymorphisms. Genetics, 74, 175 195.
29. Lexer C, Kremer A, Petit RJ (2006) Shared alleles in sympatric oaks: recurrent gene flow is a more parsimonious explanation than ancestral polymorphism. Molecular Ecology, 15, 2007 2012.
30. Liou LW, Price TD (1994) Speciation by reinforcement of premating isolation. Evolution, 48, 1451 1459.
31. Luikart G, England PR, Tallmon D, Jordan S, Taberlet P (2003) The power and promise of population genomics: from genotyping to genome typing. Nature Reviews Genetics, 4, 981 994.
32. Machado CA, Hey J (2003) The causes of phylogenetic conflict in a classic Drosophila species group. Proceedings of the Royal Society B: Biological Sciences, 270, 1193 1202.
33. Machado CA, Kliman RM, Markert JA, Hey J (2002) Inferring the history of speciation from multilocus DNA sequence data: the case of Drosophila pseudoobscura and close relatives. Molecular Biology and Evolution, 19, 472 488.
34. Maddison WP (1997) Gene trees in species trees. Systematic Biology, 46, 523 536.
35. Mallarino R, Bermingham E, Willmott K, Whinnett A, Jiggins CD (2004) Molecular systematics of the butterfly genus Ithomia (Lepidoptera: Ithomiinae): a composite phylogenetic hypothesis based on seven genes. Molecular Phylogenetics and Evolution, 34, 625 644.
36. Mallet J (2005a) Speciation in the 21st century. Heredity, 95, 105 109.
37. Mallet J (2005b) Hybridization as an invasion of the genome. Trends in Ecology & Evolution, 20, 229 237.
38. Mallet J, Beltran M, Neukirchen W, Linares M (2007) Natural hybridization in heliconiine butterflies: the species boundary as a continuum. BMC Evolutionary Biology, 7, 28.
39. Mayr E (1942) Systematics and the Origin of Species. Columbia University Press, New York.
40. Morjan CL, Rieseberg LH (2004) How species evolve collectively: implications of gene flow and selection for the spread of advantageous alleles. Molecular Ecology, 13, 1341 1356.
41. Nosil P, Egan SP, Funk DJ (2008) Heterogeneous genomic differentiation between walking-stick ecotypes: 'Isolation by adaptation' and multiple roles for divergent selection. Evolution, 62, 316 336.
42. Oetjen K, Reusch TB (2007) Genome scans detect consistent divergent selection among subtidal vs. intertidal populations of the marine angiosperm Zostera marina. Molecular Ecology, 16, 5156 5167.
43. Otte D, Endler JA, eds 1989) Speciation and its Consequences. Sinauer Associates, Sunderland, Massachusetts.
44. Payseur BA, Krenz JG, Nachman M (2004) Differential patterns of introgression across the X chromosome in a hybrid zone between two species of house mice. Evolution, 58, 2064 2078.
45. Pollard DA, Iyer VN, Moses AM, Eisen MB (2006) Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting. Public Library of Science, Genetics, 2, 1634 1647.
46. Ramsey JR, Bradshaw HD Jr., Schemske DW (2003) Components of reproductive isolation between the monkeyflowers Mimulus lewisii and M. cardinalis (Phrymaceae). Evolution, 57, 1520 1534.
47. Rice WR, Hostert EE (1993) Laboratory experiments on speciation: what have we learned in 40 years? Evolution, 47, 1637 1653.
48. Rieseberg LH, Burke JH (2001) The biological reality of species: gene flow, selection and collective evolution. Taxon, 50, 47 67.
49. Rieseberg LH, Whitton J, Gardner K (1999) Hybrid zones and the genetic architecture of barrier to gene flow between two sunflower species. Genetics, 152, 713 727.
50. Rogers SM, Bernatchez L (2005) Integrating QTL mapping and genome scans towards the characterization of candidate loci under parallel selection in the lake whitefish (Coregonus clupeaformis). Molecular Ecology, 14, 351 361.
51. Rogers SM, Bernatchez L (2007) The genetic architecture of ecological speciation and the association with signatures of selection in natural lake whitefish (Coregonus sp. Salmonidae) species pairs. Molecular Biology and Evolution, 24, 1423 1428.
52. Rundle HD, Nosil P (2005) Ecological speciation. Ecology Letters, 8, 336 352.
53. Sandstrom J (1996) Temporal change in host adaptation in the pea aphid, Acyrthosiphon pisum. Ecological Entomology, 21, 56 62.
54. Schemske DW (2000) Understanding the origin of species. Evolution, 54, 1069 1073.
55. Schluter D (2001) Ecology and the origin of species. Trends in Ecology & Evolution, 16, 372 380.
56. Scotti-Saintagne C, Mariete S, Porth I et al 2004) Genome scanning for interspecific differentiation between two closely related oak species [Quercus robur L. and Q. petraea (Matt.) Leibl]. Genetics, 168, 1615 1626.
57. Shaw KL (2002) Conflict between nuclear and mictochondrial DNA phylogenies of a recent species radiation: what mitochondrial DNA reveals and conceals about modes of speciation in Hawaiian crickets. Proceedings of the National Academy of Sciences, USA, 99, 16122 16129.
58. Simon JC, Carre S, Boutin M et al 2003) Host-based divergence in populations of the pea aphid: insights from nuclear markers and the prevalence of facultative symbionts. Proceedings of the Royal Society B: Biological Sciences, 270, 1703 1712.
59. Slatkin M (1987) Gene flow and the geographic structure of natural populations. Science, 236, 787 792.
60. Storz JF (2005) Using genome scans of DNA polymorphism to infer adaptive population divergence. Molecular Ecology, 14, 671 688.
61. Templeton AR (1981) Mechanisms of speciation- a population genetic approach. Annual Review of Ecology and Systematics, 12, 23 48.
62. Ting C-T, Tsaur S-C, Wu C-I (2000) The phylogeny of closely related species as revealed by the genealogy of a speciation gene, Odysseus. Proceedings of the National Academy of Sciences, USA, 97, 5313 5316.
63. Turner TL, Hahn MW, Nuzhdin SV (2005) Genomic islands of speciation in Anopheles gambiae. Public Library of Science, Biology, 9, 1572 1578.
64. Vasemagi A, Nilsson J, Primmer CR (2005) Expressed sequence tag-linked microsatellites as a source of gene-associated polymorphisms for detecting signatures of divergent selection in Atlantic salmon (Salmo salar L.). Molecular Biology and Evolution, 22, 1067 1076.
65. Via S (1989) Field estimation of variation in host plant use between local populations of pea aphids from two crops. Ecological Entomology, 14, 357 364.
66. Via S (1991) The genetic structure of host plant adaptation in a spatial patchwork: demographic variability among reciprocally transplanted pea aphid clones. Evolution, 45, 827 852.
67. Via S (1999) Reproductive isolation between sympatric races of pea aphids. I. Gene flow restriction and habitat choice. Evolution, 53, 1446 1457.
68. Via S (2001) Sympatric speciation in animals: the ugly duckling grows up. Trends in Ecology & Evolution, 16, 381 390.
69. Via S, Hawthorne DJ (2001) Genetic architecture of ecological specialization and incipient speciation in divergent races of pea aphids. The American Naturalist, 159, S47 S60.
70. Via S, Bouck AC, Skillman S (2000) Reproductive isolation between sympatric races of pea aphids. II. Selection against migrants and hybrids in the parental environment. Evolution, 54, 1626 1637.
71. Wilding CS, Butlin RK, Grahame J (2001) Differential gene exchange between parapatric morphs of Littorina saxatillis detected using AFLP markers. Journal of Evolutionary Biology, 14, 611 619.
72. Yatabe Y, Kane NC, Scotti-Saintagne C, Rieseberg LH (2007) Rampant gene exchange across a strong reproductive barrier between the annual sunflowers, Helianthus annuus and H. petiolaris. Genetics, 175, 1883 1893.