메뉴 건너뛰기




Volumn 14, Issue 8, 2005, Pages 2611-2620

Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study

Author keywords

AFLP; Hierarchical structure; Microsatellite; Simulations; STRUCTURE software

Indexed keywords

MICROSATELLITE DNA;

EID: 21244479740     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2005.02553.x     Document Type: Article
Times cited : (18115)

References (42)
  • 1
    • 0042531733 scopus 로고    scopus 로고
    • Evidence for gene flow via seed dispersal from crop to wild relatives in Beta vulgaris (Chenopodiaceae): Consequences for the release of genetically modified crop species with weedy lineages
    • Arnaud JF, Viard F, Delescluse M, Cuguen J (2003) Evidence for gene flow via seed dispersal from crop to wild relatives in Beta vulgaris (Chenopodiaceae): consequences for the release of genetically modified crop species with weedy lineages. Proceedings of the Royal Society of London. Series B, Biological Sciences, 270, 1565-1571.
    • (2003) Proceedings of the Royal Society of London. Series B, Biological Sciences , vol.270 , pp. 1565-1571
    • Arnaud, J.F.1    Viard, F.2    Delescluse, M.3    Cuguen, J.4
  • 2
    • 0034952180 scopus 로고    scopus 로고
    • EASYPOP (version 1.7): A computer program for population genetics simulations
    • Balloux F (2001) EASYPOP (version 1.7): a computer program for population genetics simulations. Journal of Heredity, 92, 301-302.
    • (2001) Journal of Heredity , vol.92 , pp. 301-302
    • Balloux, F.1
  • 3
    • 0033980644 scopus 로고    scopus 로고
    • WHICHRUN (version 3.2): A computer program for population assignment of individuals based on multilocus genotype data
    • Banks MA, Eichert W (2000) WHICHRUN (version 3.2): a computer program for population assignment of individuals based on multilocus genotype data. Journal of Heredity, 91, 87-89.
    • (2000) Journal of Heredity , vol.91 , pp. 87-89
    • Banks, M.A.1    Eichert, W.2
  • 4
    • 0035086888 scopus 로고    scopus 로고
    • Genetic diversity and introgression in the Scottish wildcat
    • Beaumont M, Barratt EM, Gottelli D et al. (2001) Genetic diversity and introgression in the Scottish wildcat. Molecular Ecology, 10, 319-336.
    • (2001) Molecular Ecology , vol.10 , pp. 319-336
    • Beaumont, M.1    Barratt, E.M.2    Gottelli, D.3
  • 6
    • 0942278755 scopus 로고    scopus 로고
    • Genetic structure among closely spaced leks on a peripheral population of lesser prairie-chickens
    • Bouzat JL, Johnson K (2004) Genetic structure among closely spaced leks on a peripheral population of lesser prairie-chickens. Molecular Ecology, 13, 499-505.
    • (2004) Molecular Ecology , vol.13 , pp. 499-505
    • Bouzat, J.L.1    Johnson, K.2
  • 8
    • 0242625383 scopus 로고    scopus 로고
    • Assessing population structure and gene flow in Montana wolverines (Gulo gulo) using assignment-based approaches
    • Cegelski CC, Waits LP, Anderson NJ (2003) Assessing population structure and gene flow in Montana wolverines (Gulo gulo) using assignment-based approaches. Molecular Ecology, 12, 2907-2918.
    • (2003) Molecular Ecology , vol.12 , pp. 2907-2918
    • Cegelski, C.C.1    Waits, L.P.2    Anderson, N.J.3
  • 9
    • 0030617973 scopus 로고    scopus 로고
    • Microsatellites reveal high population viscosity and limited dispersal in the ant Formica paralugubris
    • Chapuisat M, Goudet J, Keller L (1997) Microsatellites reveal high population viscosity and limited dispersal in the ant Formica paralugubris. Evolution, 51, 475-482.
    • (1997) Evolution , vol.51 , pp. 475-482
    • Chapuisat, M.1    Goudet, J.2    Keller, L.3
  • 10
    • 0036845026 scopus 로고    scopus 로고
    • Microsatellite analysis of genetic divergence among populations of giant Galápagos tortoises
    • Ciofi C, Milinkovitch MC, Gibbs JP, Caccone A, Powell JR (2002) Microsatellite analysis of genetic divergence among populations of giant Galápagos tortoises. Molecular Ecology, 11, 2265-2283.
    • (2002) Molecular Ecology , vol.11 , pp. 2265-2283
    • Ciofi, C.1    Milinkovitch, M.C.2    Gibbs, J.P.3    Caccone, A.4    Powell, J.R.5
  • 11
    • 0037274702 scopus 로고    scopus 로고
    • Bayesian analysis of genetic differentiation between populations
    • Corander J, Waldmann P, Sillanpaa MJ (2003) Bayesian analysis of genetic differentiation between populations. Genetics, 163, 367-374.
    • (2003) Genetics , vol.163 , pp. 367-374
    • Corander, J.1    Waldmann, P.2    Sillanpaa, M.J.3
  • 12
    • 0032711229 scopus 로고    scopus 로고
    • New methods employing multilocus genotypes to select or exclude populations as origins of individuals
    • Cornuet JM, Piry S, Luikart G, Estoup A, Solignac M (1999) New methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics, 153, 1989-2000.
    • (1999) Genetics , vol.153 , pp. 1989-2000
    • Cornuet, J.M.1    Piry, S.2    Luikart, G.3    Estoup, A.4    Solignac, M.5
  • 13
    • 0034879445 scopus 로고    scopus 로고
    • A Bayesian approach to the identification of panmictic populations and the assignment of individuals
    • Dawson KJ, Belkhir K (2001) A Bayesian approach to the identification of panmictic populations and the assignment of individuals. Genetical Research, 78, 59-77.
    • (2001) Genetical Research , vol.78 , pp. 59-77
    • Dawson, K.J.1    Belkhir, K.2
  • 14
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics, 164, 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 15
    • 3042700204 scopus 로고    scopus 로고
    • Genetic diversity and differentiation in Eryngium alpinum L. (Apiaceae): Comparison of AFLP and microsatellite markers
    • Gaudeul M, Till-Bottraud I, Barjon F, Manel S (2004) Genetic diversity and differentiation in Eryngium alpinum L. (Apiaceae): comparison of AFLP and microsatellite markers. Heredity, 92, 508-518.
    • (2004) Heredity , vol.92 , pp. 508-518
    • Gaudeul, M.1    Till-Bottraud, I.2    Barjon, F.3    Manel, S.4
  • 16
    • 0031870885 scopus 로고    scopus 로고
    • Restricted gene flow and subpopulation differentiation in Silene dioica
    • Giles BE, Lundqvist E, Goudet J (1998) Restricted gene flow and subpopulation differentiation in Silene dioica. Heredity, 80, 715-723.
    • (1998) Heredity , vol.80 , pp. 715-723
    • Giles, B.E.1    Lundqvist, E.2    Goudet, J.3
  • 17
    • 0038338748 scopus 로고    scopus 로고
    • Measuring genetic diversity in translocation programmes: Principles and application to a chimpanzee release project
    • Goossens B, Funk SM, Vidal C et al. (2002) Measuring genetic diversity in translocation programmes: principles and application to a chimpanzee release project. Animal Conservation, 5, 225-236.
    • (2002) Animal Conservation , vol.5 , pp. 225-236
    • Goossens, B.1    Funk, S.M.2    Vidal, C.3
  • 18
    • 3843105680 scopus 로고    scopus 로고
    • Molecular techniques, wildlife management and the importance of genetic population structure and dispersal: A case study with feral pigs
    • Hampton JO, Spencer PBS, Alpers DL et al. (2004) Molecular techniques, wildlife management and the importance of genetic population structure and dispersal: a case study with feral pigs. Journal of Applied Ecology, 41, 735-743.
    • (2004) Journal of Applied Ecology , vol.41 , pp. 735-743
    • Hampton, J.O.1    Spencer, P.B.S.2    Alpers, D.L.3
  • 19
    • 0043015531 scopus 로고    scopus 로고
    • Microsatellites, from molecules to populations and back
    • Jarne P, Lagoda PJL (1996) Microsatellites, from molecules to populations and back. Trends in Ecology & Evolution, 11, 424-429.
    • (1996) Trends in Ecology & Evolution , vol.11 , pp. 424-429
    • Jarne, P.1    Lagoda, P.J.L.2
  • 20
    • 0001358930 scopus 로고
    • Stepping stone model of population structure + decrease of genetic correlation with distance
    • Kimura M, Weiss GH (1964) Stepping stone model of population structure + decrease of genetic correlation with distance. Genetics, 49, 561.
    • (1964) Genetics , vol.49 , pp. 561
    • Kimura, M.1    Weiss, G.H.2
  • 21
    • 0032905280 scopus 로고    scopus 로고
    • Hierarchical analyses of genetic differentiation in a hybrid zone of Sorex araneus (Insectivora: Soricidae)
    • Lugon-Moulin N, Brünner H, Wyttenbach A, Hausser J, Goudet J (1999) Hierarchical analyses of genetic differentiation in a hybrid zone of Sorex araneus (Insectivora: Soricidae). Molecular Ecology, 8, 419-431.
    • (1999) Molecular Ecology , vol.8 , pp. 419-431
    • Lugon-Moulin, N.1    Brünner, H.2    Wyttenbach, A.3    Hausser, J.4    Goudet, J.5
  • 23
    • 0036268487 scopus 로고    scopus 로고
    • Detecting wildlife poaching: Identifying the origin of individuals with Bayesian assignment tests and multilocus genotypes
    • Manel S, Brthier P, Luikart G (2002) Detecting wildlife poaching: identifying the origin of individuals with Bayesian assignment tests and multilocus genotypes. Conservation Biology, 16, 650-659.
    • (2002) Conservation Biology , vol.16 , pp. 650-659
    • Manel, S.1    Brthier, P.2    Luikart, G.3
  • 24
    • 0035983453 scopus 로고    scopus 로고
    • Sampling within the genome for measuring within-population diversity: Trade-offs between markers
    • Mariette S, Le Corre V, Austerlitz F, Kremer A (2002) Sampling within the genome for measuring within-population diversity: trade-offs between markers. Molecular Ecology, 11, 1145-1156.
    • (2002) Molecular Ecology , vol.11 , pp. 1145-1156
    • Mariette, S.1    Le Corre, V.2    Austerlitz, F.3    Kremer, A.4
  • 25
    • 0029310503 scopus 로고
    • Microsatellite analysis of population structure in Canadian polar bears
    • Paetkau D, Calvert W, Stirling I, Strobeck C (1995) Microsatellite analysis of population structure in Canadian polar bears. Molecular Ecology, 4, 347-354.
    • (1995) Molecular Ecology , vol.4 , pp. 347-354
    • Paetkau, D.1    Calvert, W.2    Stirling, I.3    Strobeck, C.4
  • 26
    • 0034918230 scopus 로고    scopus 로고
    • Sex-biased dispersal in a migratory bat: A characterization using sex-specific demographic parameters
    • Petit E, Balloux F, Goudet J (2001) Sex-biased dispersal in a migratory bat: a characterization using sex-specific demographic parameters. Evolution, 55, 635-640.
    • (2001) Evolution , vol.55 , pp. 635-640
    • Petit, E.1    Balloux, F.2    Goudet, J.3
  • 27
    • 0035528928 scopus 로고    scopus 로고
    • Case-control studies of association in structured or admixed populations
    • Pritchard JK, Donnelly P (2001) Case-control studies of association in structured or admixed populations. Theoretical Population Biology, 60, 227-237.
    • (2001) Theoretical Population Biology , vol.60 , pp. 227-237
    • Pritchard, J.K.1    Donnelly, P.2
  • 29
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens P, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, P.2    Donnelly, P.3
  • 30
    • 0036285275 scopus 로고    scopus 로고
    • Detecting rare introgression of domestic dog genes into wild wolf (Canis lupus) populations by Bayesian admixture analyses of microsateilite variation
    • Randi E, Lucchini V (2002) Detecting rare introgression of domestic dog genes into wild wolf (Canis lupus) populations by Bayesian admixture analyses of microsateilite variation. Conservation Genetics, 3, 31-45.
    • (2002) Conservation Genetics , vol.3 , pp. 31-45
    • Randi, E.1    Lucchini, V.2
  • 32
    • 0034759330 scopus 로고    scopus 로고
    • Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds
    • Rosenberg NA, Burke T, Elo K et al. (2001) Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds. Genetics, 159, 699-713.
    • (2001) Genetics , vol.159 , pp. 699-713
    • Rosenberg, N.A.1    Burke, T.2    Elo, K.3
  • 33
    • 0037147189 scopus 로고    scopus 로고
    • Genetic structure of human populations
    • Rosenberg NA, Pritchard JK, Weber JL et al. (2002) Genetic structure of human populations. Science, 298, 2981-2985.
    • (2002) Science , vol.298 , pp. 2981-2985
    • Rosenberg, N.A.1    Pritchard, J.K.2    Weber, J.L.3
  • 34
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogeneric trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogeneric trees. Molecular Biology and Evolution, 4, 406-425.
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 35
    • 0035121797 scopus 로고    scopus 로고
    • Accounting for unmeasured population substructure in case-control studies of genetic association using a novel latent-class model
    • Satten GA, Flanders WD, Yang QH (2001) Accounting for unmeasured population substructure in case-control studies of genetic association using a novel latent-class model. American Journal of Human Genetics, 68, 466-477.
    • (2001) American Journal of Human Genetics , vol.68 , pp. 466-477
    • Satten, G.A.1    Flanders, W.D.2    Yang, Q.H.3
  • 36
    • 0025924545 scopus 로고
    • ST in hierarchical island model
    • ST in hierarchical island model. Genetics, 127, 627-629.
    • (1991) Genetics , vol.127 , pp. 627-629
    • Slatkin, M.1    Voelm, L.2
  • 37
    • 14844366473 scopus 로고    scopus 로고
    • Ecological components and evolution of selfing in the freshwater snail Galba truncatula
    • Trouvé S, Degen L, Goudet J (2005) Ecological components and evolution of selfing in the freshwater snail Galba truncatula. Journal of Evolutionary Biology, 18, 358-370.
    • (2005) Journal of Evolutionary Biology , vol.18 , pp. 358-370
    • Trouvé, S.1    Degen, L.2    Goudet, J.3
  • 38
    • 0043175282 scopus 로고    scopus 로고
    • Number of SNPS loci needed to detect population structure
    • Turakulov R, Easteal S (2003) Number of SNPS loci needed to detect population structure. Human Heredity, 55, 37-45.
    • (2003) Human Heredity , vol.55 , pp. 37-45
    • Turakulov, R.1    Easteal, S.2
  • 39
    • 0037348751 scopus 로고    scopus 로고
    • The genetic impact of demographic decline and reintroduction in the wild boar (Sus scrofa): A microsatellite analysis
    • Vernesi C, Crestanello B, Pecchioli E et al. (2003) The genetic impact of demographic decline and reintroduction in the wild boar (Sus scrofa): a microsatellite analysis. Molecular Ecology, 12, 585-595.
    • (2003) Molecular Ecology , vol.12 , pp. 585-595
    • Vernesi, C.1    Crestanello, B.2    Pecchioli, E.3
  • 40
    • 0028834605 scopus 로고
    • AFLP: A new technique for DNA fingerprinting
    • Vos P, Hogers R, Bleeker M et al. (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research, 23, 4407-4414.
    • (1995) Nucleic Acids Research , vol.23 , pp. 4407-4414
    • Vos, P.1    Hogers, R.2    Bleeker, M.3
  • 41
    • 0001771498 scopus 로고
    • Evolution in Mendelian populations
    • Wright S (1931) Evolution in Mendelian populations. Genetics, 16, 97-159.
    • (1931) Genetics , vol.16 , pp. 97-159
    • Wright, S.1
  • 42
    • 0035821135 scopus 로고    scopus 로고
    • Determination of biogeographical range: An application of molecular phylogeography to the European pool frog Rana lessonae
    • Zeisset I, Beebee TJC (2001) Determination of biogeographical range: an application of molecular phylogeography to the European pool frog Rana lessonae. Proceedings of the Royal Society of London. Series B, Biological Sciences, 268, 933-938.
    • (2001) Proceedings of the Royal Society of London. Series B, Biological Sciences , vol.268 , pp. 933-938
    • Zeisset, I.1    Beebee, T.J.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.