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Volumn 13, Issue 1, 2012, Pages

Evolutionary forces shaping genomic islands of population differentiation in humans

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; DEMOGRAPHY; ETHNIC DIFFERENCE; EVOLUTIONARY ADAPTATION; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE LOCATION; GENE LOCUS; GENE STRUCTURE; GENETIC ASSOCIATION; GENETIC RECOMBINATION; GENETIC SELECTION; GENETIC VARIABILITY; GENOME ANALYSIS; GENOME SIZE; HETEROZYGOSITY; HUMAN; HUMAN GENOME; MOLECULAR EVOLUTION; NEGRO; POPULATION DIFFERENTIATION; SINGLE NUCLEOTIDE POLYMORPHISM; ADAPTATION; BIOLOGICAL MODEL; COMPUTER SIMULATION; GENETIC DRIFT; GENETICS; GENOMIC ISLAND;

EID: 84858711967     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-107     Document Type: Article
Times cited : (49)

References (117)
  • 1
    • 33744816190 scopus 로고    scopus 로고
    • Genomic islands of differentiation between house mouse subspecies
    • 10.1101/gr.5045006, 1473184, 16687734
    • Harr B. Genomic islands of differentiation between house mouse subspecies. Genome Res 2006, 16(6):730-737. 10.1101/gr.5045006, 1473184, 16687734.
    • (2006) Genome Res , vol.16 , Issue.6 , pp. 730-737
    • Harr, B.1
  • 2
    • 39749135589 scopus 로고    scopus 로고
    • Heterogeneous genomic differentiation between walking-stick ecotypes: "Isolation by adaptation" and multiple roles for divergent selection
    • 10.1111/j.1558-5646.2007.00299.x, 17999721
    • Nosil P, Egan SP, Funk DJ. Heterogeneous genomic differentiation between walking-stick ecotypes: "Isolation by adaptation" and multiple roles for divergent selection. Evolution 2008, 62(2):316-336. 10.1111/j.1558-5646.2007.00299.x, 17999721.
    • (2008) Evolution , vol.62 , Issue.2 , pp. 316-336
    • Nosil, P.1    Egan, S.P.2    Funk, D.J.3
  • 3
    • 35748953779 scopus 로고    scopus 로고
    • Locus- and population-specific selection and differentiation between incipient species of Anopheles gambiae
    • 10.1093/molbev/msm143, 17636041
    • Turner TL, Hahn MW. Locus- and population-specific selection and differentiation between incipient species of Anopheles gambiae. Mol Biol Evol 2007, 24:2132-2138. 10.1093/molbev/msm143, 17636041.
    • (2007) Mol Biol Evol , vol.24 , pp. 2132-2138
    • Turner, T.L.1    Hahn, M.W.2
  • 4
    • 77952690357 scopus 로고    scopus 로고
    • The efficacy of divergence hitchhiking in generating genomic islands during ecological speciation
    • 10.1111/j.1558-5646.2009.00943.x, 20624183
    • Feder JL, Nosil P. The efficacy of divergence hitchhiking in generating genomic islands during ecological speciation. Evolution 2010, 64(6):1729-1747. 10.1111/j.1558-5646.2009.00943.x, 20624183.
    • (2010) Evolution , vol.64 , Issue.6 , pp. 1729-1747
    • Feder, J.L.1    Nosil, P.2
  • 6
    • 0035132473 scopus 로고    scopus 로고
    • Great ape DNA sequences reveal a reduced diversity and an expansion in humans
    • 10.1038/84773, 11175781
    • Kaessmann H, Wiebe V, Weiss G, Paabo S. Great ape DNA sequences reveal a reduced diversity and an expansion in humans. Nature Genet 2001, 27(2):155-156. 10.1038/84773, 11175781.
    • (2001) Nature Genet , vol.27 , Issue.2 , pp. 155-156
    • Kaessmann, H.1    Wiebe, V.2    Weiss, G.3    Paabo, S.4
  • 8
    • 0001771498 scopus 로고
    • Evolution in Mendelian populations
    • Wright S. Evolution in Mendelian populations. Genetics 1931, 16(2):0097-0159.
    • (1931) Genetics , vol.16 , Issue.2 , pp. 97-159
    • Wright, S.1
  • 9
    • 72449146234 scopus 로고    scopus 로고
    • Population differentiation as an indicator of recent positive selection in humans: an empirical evaluation
    • 10.1534/genetics.109.107722, 2778960, 19737746
    • Xue YL, Zhang XL, Huang N, Daly A, Gillson CJ, MacArthur DG, Yngvadottir B, Nica AC, Woodwark C, Chen Y, et al. Population differentiation as an indicator of recent positive selection in humans: an empirical evaluation. Genetics 2009, 183(3):1065-1077. 10.1534/genetics.109.107722, 2778960, 19737746.
    • (2009) Genetics , vol.183 , Issue.3 , pp. 1065-1077
    • Xue, Y.L.1    Zhang, X.L.2    Huang, N.3    Daly, A.4    Gillson, C.J.5    MacArthur, D.G.6    Yngvadottir, B.7    Nica, A.C.8    Woodwark, C.9    Chen, Y.10
  • 10
    • 0033849167 scopus 로고    scopus 로고
    • The effect of hitch-hiking on genes linked to a balanced polymorphism in a subdivided population
    • 10.1017/S0016672300004547, 11006635
    • Schierup MH, Charlesworth D, Vekemans X. The effect of hitch-hiking on genes linked to a balanced polymorphism in a subdivided population. Genet Res 2000, 76(1):63-73. 10.1017/S0016672300004547, 11006635.
    • (2000) Genet Res , vol.76 , Issue.1 , pp. 63-73
    • Schierup, M.H.1    Charlesworth, D.2    Vekemans, X.3
  • 11
    • 33646484211 scopus 로고    scopus 로고
    • Balancing selection and its effects on sequences in nearby genome regions
    • Charlesworth D. Balancing selection and its effects on sequences in nearby genome regions. PLoS Genet 2006, 2(4):379-384.
    • (2006) PLoS Genet , vol.2 , Issue.4 , pp. 379-384
    • Charlesworth, D.1
  • 12
  • 14
    • 58149293053 scopus 로고    scopus 로고
    • Large allele frequency differences between human continental groups are more likely to have occurred by drift during range expansions than by selection
    • 10.1111/j.1469-1809.2008.00489.x, 19040659
    • Hofer T, Ray N, Wegmann D, Excoffier L. Large allele frequency differences between human continental groups are more likely to have occurred by drift during range expansions than by selection. Ann Hum Genet 2009, 73:95-108. 10.1111/j.1469-1809.2008.00489.x, 19040659.
    • (2009) Ann Hum Genet , vol.73 , pp. 95-108
    • Hofer, T.1    Ray, N.2    Wegmann, D.3    Excoffier, L.4
  • 15
    • 33746456056 scopus 로고    scopus 로고
    • Comment on "Ongoing adaptive evolution of ASPM, a brain size determinant in homo sapiens"and"microcephalin, a gene regulating brain size, continues to evolve adaptively in humans"
    • Currat M, Excoffier L, Maddison W, Otto SP, Ray N, Whitlock MC, Yeaman S. Comment on "Ongoing adaptive evolution of ASPM, a brain size determinant in homo sapiens"and"microcephalin, a gene regulating brain size, continues to evolve adaptively in humans". Science 2006, 313(5784):2.
    • (2006) Science , vol.313 , Issue.5784 , pp. 2
    • Currat, M.1    Excoffier, L.2    Maddison, W.3    Otto, S.P.4    Ray, N.5    Whitlock, M.C.6    Yeaman, S.7
  • 16
    • 33244467305 scopus 로고    scopus 로고
    • The fate of mutations surfing on the wave of a range expansion
    • Klopfstein S, Currat M, Excoffier L. The fate of mutations surfing on the wave of a range expansion. Mol Biol Evol 2006, 23(3):482-490.
    • (2006) Mol Biol Evol , vol.23 , Issue.3 , pp. 482-490
    • Klopfstein, S.1    Currat, M.2    Excoffier, L.3
  • 17
    • 73949088975 scopus 로고    scopus 로고
    • Life at the front of an expanding population
    • 10.1111/j.1558-5646.2009.00809.x, 19682067
    • Hallatschek O, Nelson DR. Life at the front of an expanding population. Evolution 2010, 64(1):193-206. 10.1111/j.1558-5646.2009.00809.x, 19682067.
    • (2010) Evolution , vol.64 , Issue.1 , pp. 193-206
    • Hallatschek, O.1    Nelson, D.R.2
  • 18
    • 0742288408 scopus 로고    scopus 로고
    • Mutations arising in the wave front of an expanding population
    • Edmonds CA, Lillie AS, Cavalli-Sforza LL. Mutations arising in the wave front of an expanding population. P Natl Acad Sci USA 2004, 101(4):975-979.
    • (2004) P Natl Acad Sci USA , vol.101 , Issue.4 , pp. 975-979
    • Edmonds, C.A.1    Lillie, A.S.2    Cavalli-Sforza, L.L.3
  • 19
    • 52549128794 scopus 로고    scopus 로고
    • Landscape structure and boundary effects determine the fate of mutations occurring during range expansions
    • 10.1038/hdy.2008.56, 18594561
    • Burton OJ, Travis JMJ. Landscape structure and boundary effects determine the fate of mutations occurring during range expansions. Heredity 2008, 101(4):329-340. 10.1038/hdy.2008.56, 18594561.
    • (2008) Heredity , vol.101 , Issue.4 , pp. 329-340
    • Burton, O.J.1    Travis, J.M.J.2
  • 20
    • 35348923543 scopus 로고    scopus 로고
    • Deleterious mutations can surf to high densities on the wave front of an expanding population
    • 10.1093/molbev/msm167, 17703053
    • Travis JMJ, Munkemuller T, Burton OJ, Best A, Dytham C, Johst K. Deleterious mutations can surf to high densities on the wave front of an expanding population. Mol Biol Evol 2007, 24(10):2334-2343. 10.1093/molbev/msm167, 17703053.
    • (2007) Mol Biol Evol , vol.24 , Issue.10 , pp. 2334-2343
    • Travis, J.M.J.1    Munkemuller, T.2    Burton, O.J.3    Best, A.4    Dytham, C.5    Johst, K.6
  • 30
    • 0036963687 scopus 로고    scopus 로고
    • Nucleotide variability at G6pd and the signature of malarial selection in humans
    • 1462360, 12524354
    • Saunders MA, Hammer MF, Nachman MW. Nucleotide variability at G6pd and the signature of malarial selection in humans. Genetics 2002, 162(4):1849-1861. 1462360, 12524354.
    • (2002) Genetics , vol.162 , Issue.4 , pp. 1849-1861
    • Saunders, M.A.1    Hammer, M.F.2    Nachman, M.W.3
  • 33
    • 76749097550 scopus 로고    scopus 로고
    • The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation
    • 10.1016/j.cub.2009.11.055, 2994553, 20178769
    • Pritchard JK, Pickrell JK, Coop G. The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation. Curr Biol 2010, 20(4):R208-R215. 10.1016/j.cub.2009.11.055, 2994553, 20178769.
    • (2010) Curr Biol , vol.20 , Issue.4
    • Pritchard, J.K.1    Pickrell, J.K.2    Coop, G.3
  • 34
    • 78951480118 scopus 로고    scopus 로고
    • Parallel adaptation: one or many waves of advance of an advantageous allele?
    • 10.1534/genetics.110.119594, 2954473, 20660645
    • Ralph P, Coop G. Parallel adaptation: one or many waves of advance of an advantageous allele?. Genetics 2010, 186(2):647-668. 10.1534/genetics.110.119594, 2954473, 20660645.
    • (2010) Genetics , vol.186 , Issue.2 , pp. 647-668
    • Ralph, P.1    Coop, G.2
  • 35
    • 70349506039 scopus 로고    scopus 로고
    • Detecting loci under selection in a hierarchically structured population
    • 10.1038/hdy.2009.74, 19623208
    • Excoffier L, Hofer T, Foll M. Detecting loci under selection in a hierarchically structured population. Heredity 2009, 103(4):285-298. 10.1038/hdy.2009.74, 19623208.
    • (2009) Heredity , vol.103 , Issue.4 , pp. 285-298
    • Excoffier, L.1    Hofer, T.2    Foll, M.3
  • 36
    • 0030467524 scopus 로고    scopus 로고
    • Evaluating loci for use in the genetic analysis of population structure
    • Beaumont MA, Nichols RA. Evaluating loci for use in the genetic analysis of population structure. P Roy Soc B-Biol Sci 1996, 263(1377):1619-1626.
    • (1996) P Roy Soc B-Biol Sci , vol.263 , Issue.1377 , pp. 1619-1626
    • Beaumont, M.A.1    Nichols, R.A.2
  • 37
    • 58149151065 scopus 로고    scopus 로고
    • Accelerated genetic drift on chromosome X during the human dispersal out of Africa
    • 10.1038/ng.303, 2612098, 19098910
    • Keinan A, Mullikin JC, Patterson N, Reich D. Accelerated genetic drift on chromosome X during the human dispersal out of Africa. Nature Genet 2009, 41(1):66-70. 10.1038/ng.303, 2612098, 19098910.
    • (2009) Nature Genet , vol.41 , Issue.1 , pp. 66-70
    • Keinan, A.1    Mullikin, J.C.2    Patterson, N.3    Reich, D.4
  • 39
    • 33747865461 scopus 로고    scopus 로고
    • Applications for protein sequence-function evolution data: mRNA/protein expression analysis and coding SNP scoring tools
    • 10.1093/nar/gkl229, 1538848, 16912992
    • Thomas PD, Kejariwal A, Guo N, Mi HY, Campbell MJ, Muruganujan A, Lazareva-Ulitsky B. Applications for protein sequence-function evolution data: mRNA/protein expression analysis and coding SNP scoring tools. Nucleic Acids Res 2006, 34:W645-W650. 10.1093/nar/gkl229, 1538848, 16912992.
    • (2006) Nucleic Acids Res , vol.34
    • Thomas, P.D.1    Kejariwal, A.2    Guo, N.3    Mi, H.Y.4    Campbell, M.J.5    Muruganujan, A.6    Lazareva-Ulitsky, B.7
  • 40
    • 70349501387 scopus 로고    scopus 로고
    • Who believes in whole-genome scans for selection?
    • 10.1038/hdy.2009.101, 19654610
    • Hermisson J. Who believes in whole-genome scans for selection?. Heredity 2009, 103(4):283-284. 10.1038/hdy.2009.101, 19654610.
    • (2009) Heredity , vol.103 , Issue.4 , pp. 283-284
    • Hermisson, J.1
  • 41
    • 33749010048 scopus 로고    scopus 로고
    • Signatures of adaptive evolution within human non-coding sequence
    • 10.1093/hmg/ddl182, 16987880
    • Ponting CP, Lunter G. Signatures of adaptive evolution within human non-coding sequence. Hum Mol Genet 2006, 15:R170-R175. 10.1093/hmg/ddl182, 16987880.
    • (2006) Hum Mol Genet , vol.15
    • Ponting, C.P.1    Lunter, G.2
  • 42
    • 38849164333 scopus 로고    scopus 로고
    • Demeter's legacy: rapid changes to our genome imposed by diet
    • 10.1016/j.tree.2007.11.002, 18191277
    • Patin E, Quintana-Murci L. Demeter's legacy: rapid changes to our genome imposed by diet. Trends Ecol Evol 2008, 23(2):56-59. 10.1016/j.tree.2007.11.002, 18191277.
    • (2008) Trends Ecol Evol , vol.23 , Issue.2 , pp. 56-59
    • Patin, E.1    Quintana-Murci, L.2
  • 44
    • 38749114995 scopus 로고    scopus 로고
    • Molecular origins of cancer: oncogenes and cancer
    • 10.1056/NEJMra072367, 18234754
    • Croce CM. Molecular origins of cancer: oncogenes and cancer. N Engl J Med 2008, 358(5):502-511. 10.1056/NEJMra072367, 18234754.
    • (2008) N Engl J Med , vol.358 , Issue.5 , pp. 502-511
    • Croce, C.M.1
  • 46
    • 60449111647 scopus 로고    scopus 로고
    • Sequence analysis of human TRPV6 suggests positive selection outside africa
    • 10.1007/s10528-009-9222-x, 19169858
    • Soejima M, Tachida H, Koda Y. Sequence analysis of human TRPV6 suggests positive selection outside africa. Biochem Genet 2009, 47(1-2):147-153. 10.1007/s10528-009-9222-x, 19169858.
    • (2009) Biochem Genet , vol.47 , Issue.1-2 , pp. 147-153
    • Soejima, M.1    Tachida, H.2    Koda, Y.3
  • 48
    • 29144492108 scopus 로고    scopus 로고
    • Ancient and recent positive selection transformed opioid cis-regulation in humans
    • 10.1371/journal.pbio.0030387, 1283535, 16274263
    • Rockman MV, Hahn MW, Soranzo N, Zimprich F, Goldstein DB, Wray GA. Ancient and recent positive selection transformed opioid cis-regulation in humans. PLoS Biol 2005, 3(12):e387. 10.1371/journal.pbio.0030387, 1283535, 16274263.
    • (2005) PLoS Biol , vol.3 , Issue.12
    • Rockman, M.V.1    Hahn, M.W.2    Soranzo, N.3    Zimprich, F.4    Goldstein, D.B.5    Wray, G.A.6
  • 49
    • 0036157464 scopus 로고    scopus 로고
    • Complex signatures of natural selection at the Duffy blood group locus
    • 10.1086/338628, 419988, 11753822
    • Hamblin MT, Thompson EE, Di Rienzo A. Complex signatures of natural selection at the Duffy blood group locus. Am J Hum Genet 2002, 70(2):369-383. 10.1086/338628, 419988, 11753822.
    • (2002) Am J Hum Genet , vol.70 , Issue.2 , pp. 369-383
    • Hamblin, M.T.1    Thompson, E.E.2    Di Rienzo, A.3
  • 50
    • 68949205721 scopus 로고    scopus 로고
    • Recent positive selection of a human androgen receptor/ectodysplasin A2 receptor haplotype and its relationship to male pattern baldness
    • 10.1007/s00439-009-0668-z, 19373488
    • Hillmer AM, Freudenberg J, Myles S, Herms S, Tang K, Hughes DA, Brockschmidt FF, Ruan YJ, Stoneking M, Nothen MM. Recent positive selection of a human androgen receptor/ectodysplasin A2 receptor haplotype and its relationship to male pattern baldness. Hum Genet 2009, 126(2):255-264. 10.1007/s00439-009-0668-z, 19373488.
    • (2009) Hum Genet , vol.126 , Issue.2 , pp. 255-264
    • Hillmer, A.M.1    Freudenberg, J.2    Myles, S.3    Herms, S.4    Tang, K.5    Hughes, D.A.6    Brockschmidt, F.F.7    Ruan, Y.J.8    Stoneking, M.9    Nothen, M.M.10
  • 51
    • 34247647905 scopus 로고    scopus 로고
    • Comprehensive evaluation of allele frequency differences of MC1R variants across populations
    • 10.1002/humu.20476, 17279550
    • Gerstenblith MR, Goldstein AM, Fargnoli MC, Peris K, Landi MT. Comprehensive evaluation of allele frequency differences of MC1R variants across populations. Hum Mutat 2007, 28(5):495-505. 10.1002/humu.20476, 17279550.
    • (2007) Hum Mutat , vol.28 , Issue.5 , pp. 495-505
    • Gerstenblith, M.R.1    Goldstein, A.M.2    Fargnoli, M.C.3    Peris, K.4    Landi, M.T.5
  • 52
    • 34247097012 scopus 로고    scopus 로고
    • Signatures of positive selection in genes associated with human skin pigmentation as revealed from analyses of single nucleotide polymorphisms
    • 10.1111/j.1469-1809.2006.00341.x, 17233754
    • Lao O, de Gruijter JM, van Duijn K, Navarro A, Kayser M. Signatures of positive selection in genes associated with human skin pigmentation as revealed from analyses of single nucleotide polymorphisms. Ann Hum Genet 2007, 71(3):354-369. 10.1111/j.1469-1809.2006.00341.x, 17233754.
    • (2007) Ann Hum Genet , vol.71 , Issue.3 , pp. 354-369
    • Lao, O.1    de Gruijter, J.M.2    van Duijn, K.3    Navarro, A.4    Kayser, M.5
  • 54
    • 33748171462 scopus 로고    scopus 로고
    • A scan for signatures of positive selection in candidate loci for skin pigmentation in humans
    • 10.1093/molbev/msl030, 16757656
    • Izagirre N, Garcia I, Junquera C, de la Rua C, Alonso S. A scan for signatures of positive selection in candidate loci for skin pigmentation in humans. Mol Biol Evol 2006, 23(9):1697-1706. 10.1093/molbev/msl030, 16757656.
    • (2006) Mol Biol Evol , vol.23 , Issue.9 , pp. 1697-1706
    • Izagirre, N.1    Garcia, I.2    Junquera, C.3    de la Rua, C.4    Alonso, S.5
  • 56
    • 51749101703 scopus 로고    scopus 로고
    • Balancing selection and heterogeneity across the classical human leukocyte antigen loci: a meta-analytic review of 497 population studies
    • 10.1016/j.humimm.2008.05.001, 2632948, 18638659
    • Solberg OD, Mack SJ, Lancastera AK, Single RM, Tsai Y, Sanchez-Mazas A, Thomson G. Balancing selection and heterogeneity across the classical human leukocyte antigen loci: a meta-analytic review of 497 population studies. Hum Immunol 2008, 69(7):443-464. 10.1016/j.humimm.2008.05.001, 2632948, 18638659.
    • (2008) Hum Immunol , vol.69 , Issue.7 , pp. 443-464
    • Solberg, O.D.1    Mack, S.J.2    Lancastera, A.K.3    Single, R.M.4    Tsai, Y.5    Sanchez-Mazas, A.6    Thomson, G.7
  • 57
    • 0033899763 scopus 로고    scopus 로고
    • Contrasting evolutionary histories of two introns of the duchenne muscular dystrophy gene, DMD, in humans
    • 1461203, 10924480
    • Nachman MW, Crowell SL. Contrasting evolutionary histories of two introns of the duchenne muscular dystrophy gene, DMD, in humans. Genetics 2000, 155(4):1855-1864. 1461203, 10924480.
    • (2000) Genetics , vol.155 , Issue.4 , pp. 1855-1864
    • Nachman, M.W.1    Crowell, S.L.2
  • 58
    • 0036911353 scopus 로고    scopus 로고
    • Interrogating a high-density SNP map for signatures of natural selection
    • 10.1101/gr.631202, 187574, 12466284
    • Akey JM, Zhang G, Zhang K, Jin L, Shriver MD. Interrogating a high-density SNP map for signatures of natural selection. Genome Res 2002, 12(12):1805-1814. 10.1101/gr.631202, 187574, 12466284.
    • (2002) Genome Res , vol.12 , Issue.12 , pp. 1805-1814
    • Akey, J.M.1    Zhang, G.2    Zhang, K.3    Jin, L.4    Shriver, M.D.5
  • 60
    • 45849145445 scopus 로고    scopus 로고
    • Identifying selected regions from heterozygosity and divergence using a light-coverage genomic dataset from two human populations
    • 10.1371/journal.pone.0001712, 2248624, 18320033
    • Oleksyk TK, Zhao K, De La Vega FM, Gilbert DA, O'Brien SJ, Smith MW. Identifying selected regions from heterozygosity and divergence using a light-coverage genomic dataset from two human populations. Plos One 2008, 3(3):e1712. 10.1371/journal.pone.0001712, 2248624, 18320033.
    • (2008) Plos One , vol.3 , Issue.3
    • Oleksyk, T.K.1    Zhao, K.2    De La Vega, F.M.3    Gilbert, D.A.4    O'Brien, S.J.5    Smith, M.W.6
  • 61
  • 62
    • 77649260327 scopus 로고    scopus 로고
    • Population differentiation as a test for selective sweeps
    • 10.1101/gr.100545.109, 2840981, 20086244
    • Chen H, Patterson N, Reich D. Population differentiation as a test for selective sweeps. Genome Res 2010, 20(3):393-402. 10.1101/gr.100545.109, 2840981, 20086244.
    • (2010) Genome Res , vol.20 , Issue.3 , pp. 393-402
    • Chen, H.1    Patterson, N.2    Reich, D.3
  • 63
    • 27544482154 scopus 로고    scopus 로고
    • Genomic regions exhibiting positive selection identified from dense genotype data
    • 10.1101/gr.4326505, 1310643, 16251465
    • Carlson CS, Thomas DJ, Eberle MA, Swanson JE, Livingston RJ, Rieder MJ, Nickerson DA. Genomic regions exhibiting positive selection identified from dense genotype data. Genome Res 2005, 15(11):1553-1565. 10.1101/gr.4326505, 1310643, 16251465.
    • (2005) Genome Res , vol.15 , Issue.11 , pp. 1553-1565
    • Carlson, C.S.1    Thomas, D.J.2    Eberle, M.A.3    Swanson, J.E.4    Livingston, R.J.5    Rieder, M.J.6    Nickerson, D.A.7
  • 64
    • 46449121800 scopus 로고    scopus 로고
    • Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
    • 10.1101/gr.074187.107, 2493391, 18411405
    • Hellmann I, Mang Y, Gu ZP, Li P, de la Vega FM, Clark AG, Nielsen R. Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals. Genome Res 2008, 18(7):1020-1029. 10.1101/gr.074187.107, 2493391, 18411405.
    • (2008) Genome Res , vol.18 , Issue.7 , pp. 1020-1029
    • Hellmann, I.1    Mang, Y.2    Gu, Z.P.3    Li, P.4    de la Vega, F.M.5    Clark, A.G.6    Nielsen, R.7
  • 65
    • 33644981509 scopus 로고    scopus 로고
    • A map of recent positive selection in the human genome
    • 10.1371/journal.pbio.0040072, 1382018, 16494531
    • Voight BF, Kudaravalli S, Wen X, Pritchard JK. A map of recent positive selection in the human genome. PLoS Biol 2006, 4(3):e72. 10.1371/journal.pbio.0040072, 1382018, 16494531.
    • (2006) PLoS Biol , vol.4 , Issue.3
    • Voight, B.F.1    Kudaravalli, S.2    Wen, X.3    Pritchard, J.K.4
  • 67
    • 34547110828 scopus 로고    scopus 로고
    • A new approach for using genome scans to detect recent positive selection in the human genome
    • Tang K, Thornton KR, Stoneking M. A new approach for using genome scans to detect recent positive selection in the human genome. PLoS Biol 2007, 5(7):1587-1602.
    • (2007) PLoS Biol , vol.5 , Issue.7 , pp. 1587-1602
    • Tang, K.1    Thornton, K.R.2    Stoneking, M.3
  • 71
  • 72
    • 13144282726 scopus 로고    scopus 로고
    • A limited role for balancing selection
    • 10.1016/j.tig.2004.11.001, 15680511
    • Asthana S, Schmidt S, Sunyaev S. A limited role for balancing selection. Trends Genet 2005, 21(1):30-32. 10.1016/j.tig.2004.11.001, 15680511.
    • (2005) Trends Genet , vol.21 , Issue.1 , pp. 30-32
    • Asthana, S.1    Schmidt, S.2    Sunyaev, S.3
  • 73
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
    • 10.1111/j.1755-0998.2010.02847.x, 21565059
    • Excoffier L, Lischer HEL. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 2010, 10(3):564-567. 10.1111/j.1755-0998.2010.02847.x, 21565059.
    • (2010) Mol Ecol Resour , vol.10 , Issue.3 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.L.2
  • 74
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir BS, Cockerham CC. Estimating F-statistics for the analysis of population structure. Evolution 1984, 38(6):1358-1370.
    • (1984) Evolution , vol.38 , Issue.6 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 75
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes--application to human mitochondrial-DNA restriction data
    • 1205020, 1644282
    • Excoffier L, Smouse PE, Quattro JM. Analysis of molecular variance inferred from metric distances among DNA haplotypes--application to human mitochondrial-DNA restriction data. Genetics 1992, 131(2):479-491. 1205020, 1644282.
    • (1992) Genetics , vol.131 , Issue.2 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 76
    • 0025924545 scopus 로고
    • F(ST) in a Hierarchical island model
    • 1204389, 2016058
    • Slatkin M, Voelm L. F(ST) in a Hierarchical island model. Genetics 1991, 127(3):627-629. 1204389, 2016058.
    • (1991) Genetics , vol.127 , Issue.3 , pp. 627-629
    • Slatkin, M.1    Voelm, L.2
  • 77
    • 79961135005 scopus 로고    scopus 로고
    • R: A language and environment for statistical computing
    • Vienna, Austria: R Foundation for Statistical Computing, R Development Core Team
    • R Development Core Team R: A language and environment for statistical computing. 2011, Vienna, Austria: R Foundation for Statistical Computing, R Development Core Team.
    • (2011)
  • 78
    • 0000933735 scopus 로고
    • On a test whether two samples are from the same population
    • Wald A, Wolfowitz J. On a test whether two samples are from the same population. Ann Math Stat 1940, 11:147-162.
    • (1940) Ann Math Stat , vol.11 , pp. 147-162
    • Wald, A.1    Wolfowitz, J.2
  • 79
    • 33746693757 scopus 로고    scopus 로고
    • Genomic signatures of positive selection in humans and the limits of outlier approaches
    • 10.1101/gr.5157306, 1524870, 16825663
    • Kelley JL, Madeoy J, Calhoun JC, Swanson W, Akey JM. Genomic signatures of positive selection in humans and the limits of outlier approaches. Genome Res 2006, 16(8):980-989. 10.1101/gr.5157306, 1524870, 16825663.
    • (2006) Genome Res , vol.16 , Issue.8 , pp. 980-989
    • Kelley, J.L.1    Madeoy, J.2    Calhoun, J.C.3    Swanson, W.4    Akey, J.M.5
  • 80
    • 63749127623 scopus 로고    scopus 로고
    • Worldwide population differentiation at disease-associated SNPs
    • 10.1186/1755-8794-1-10, 2377253, 18433489
    • Myles S, Davison D, Barrett J, Stoneking M, Timpson N. Worldwide population differentiation at disease-associated SNPs. BMC Med Genomics 2008, 1:10. 10.1186/1755-8794-1-10, 2377253, 18433489.
    • (2008) BMC Med Genomics , vol.1 , pp. 10
    • Myles, S.1    Davison, D.2    Barrett, J.3    Stoneking, M.4    Timpson, N.5
  • 81
    • 27544501017 scopus 로고    scopus 로고
    • Measures of human population structure show heterogeneity among genomic regions
    • 10.1101/gr.4398405, 1310634, 16251456
    • Weir BS, Cardon LR, Anderson AD, Nielsen DM, Hill WG. Measures of human population structure show heterogeneity among genomic regions. Genome Res 2005, 15(11):1468-1476. 10.1101/gr.4398405, 1310634, 16251456.
    • (2005) Genome Res , vol.15 , Issue.11 , pp. 1468-1476
    • Weir, B.S.1    Cardon, L.R.2    Anderson, A.D.3    Nielsen, D.M.4    Hill, W.G.5
  • 82
    • 56749103771 scopus 로고    scopus 로고
    • The Trouble with Sliding Windows and the Selective Pressure in BRCA1
    • 10.1371/journal.pone.0003746, 2581807, 19015730
    • Schmid K, Yang ZH. The Trouble with Sliding Windows and the Selective Pressure in BRCA1. Plos One 2008, 3(11):e3746. 10.1371/journal.pone.0003746, 2581807, 19015730.
    • (2008) Plos One , vol.3 , Issue.11
    • Schmid, K.1    Yang, Z.H.2
  • 83
    • 0024610919 scopus 로고
    • A tutorial on hidden markov-models and selected applications in speech secognition
    • Rabiner LR. A tutorial on hidden markov-models and selected applications in speech secognition. Proc IEEE 1989, 77(2):257-286.
    • (1989) Proc IEEE , vol.77 , Issue.2 , pp. 257-286
    • Rabiner, L.R.1
  • 84
    • 0030034795 scopus 로고    scopus 로고
    • A hidden Markov model approach to variation among sites in rate of evolution
    • Felsenstein J, Churchill GA. A hidden Markov model approach to variation among sites in rate of evolution. Mol Biol Evol 1996, 13(1):93-104.
    • (1996) Mol Biol Evol , vol.13 , Issue.1 , pp. 93-104
    • Felsenstein, J.1    Churchill, G.A.2
  • 85
    • 0034360451 scopus 로고    scopus 로고
    • Detecting homogeneous segments in DNA sequences by using hidden Markov models
    • Boys RJ, Henderson DA, Wilkinson DJ. Detecting homogeneous segments in DNA sequences by using hidden Markov models. J Roy Stat Soc C-App 2000, 49:269-285.
    • (2000) J Roy Stat Soc C-App , vol.49 , pp. 269-285
    • Boys, R.J.1    Henderson, D.A.2    Wilkinson, D.J.3
  • 86
    • 67650324310 scopus 로고    scopus 로고
    • Detecting selective sweeps: a new approach based on hidden Markov models
    • 10.1534/genetics.108.100032, 2666521, 19204373
    • Boitard S, Schlotterer C, Futschik A. Detecting selective sweeps: a new approach based on hidden Markov models. Genetics 2009, 181(4):1567-1578. 10.1534/genetics.108.100032, 2666521, 19204373.
    • (2009) Genetics , vol.181 , Issue.4 , pp. 1567-1578
    • Boitard, S.1    Schlotterer, C.2    Futschik, A.3
  • 87
    • 77953731121 scopus 로고    scopus 로고
    • A population genetic hidden Markov model for detecting genomic regions under selection
    • 10.1093/molbev/msq053, 2912474, 20185453
    • Kern AD, Haussler D. A population genetic hidden Markov model for detecting genomic regions under selection. Mol Biol Evol 2010, 27(7):1673-1685. 10.1093/molbev/msq053, 2912474, 20185453.
    • (2010) Mol Biol Evol , vol.27 , Issue.7 , pp. 1673-1685
    • Kern, A.D.1    Haussler, D.2
  • 88
    • 84939190974 scopus 로고    scopus 로고
    • HiddenMarkov: Hidden Markov models
    • Wellington, New Zealand: Statistics Research Associates
    • Harte D. HiddenMarkov: Hidden Markov models. 2009, Wellington, New Zealand: Statistics Research Associates.
    • (2009)
    • Harte, D.1
  • 89
    • 0000353178 scopus 로고
    • A maximization technique occuring in statistical analyses of probabilistic functions of markov chains
    • Baum LE, Petrie T, Soules G, Weiss N. A maximization technique occuring in statistical analyses of probabilistic functions of markov chains. Ann Math Stat 1970, 41(1):164-171.
    • (1970) Ann Math Stat , vol.41 , Issue.1 , pp. 164-171
    • Baum, L.E.1    Petrie, T.2    Soules, G.3    Weiss, N.4
  • 90
    • 84935113569 scopus 로고
    • Error bounds for convolutional codes and an asymptotically optimum decoding algorithm
    • Viterbi AJ. Error bounds for convolutional codes and an asymptotically optimum decoding algorithm. Ieee T Inform Theory 1967, 13(2):260-269.
    • (1967) Ieee T Inform Theory , vol.13 , Issue.2 , pp. 260-269
    • Viterbi, A.J.1
  • 91
    • 62849107228 scopus 로고    scopus 로고
    • Large-scale multiple testing under dependence
    • Sun WG, Cai TT. Large-scale multiple testing under dependence. J Roy Stat Soc B 2009, 71:393-424.
    • (2009) J Roy Stat Soc B , vol.71 , pp. 393-424
    • Sun, W.G.1    Cai, T.T.2
  • 92
    • 70350664664 scopus 로고    scopus 로고
    • Multiple testing in genome-wide association studies via hidden Markov models
    • 10.1093/bioinformatics/btp476, 19654115
    • Wei Z, Sun WG, Wang K, Hakonarson H. Multiple testing in genome-wide association studies via hidden Markov models. Bioinformatics 2009, 25(21):2802-2808. 10.1093/bioinformatics/btp476, 19654115.
    • (2009) Bioinformatics , vol.25 , Issue.21 , pp. 2802-2808
    • Wei, Z.1    Sun, W.G.2    Wang, K.3    Hakonarson, H.4
  • 94
    • 0000328935 scopus 로고    scopus 로고
    • Weighted comparison of means
    • 10.1136/bmj.316.7125.129, 2665397, 9462320
    • Bland JM, Kerry SM. Weighted comparison of means. BMJ 1998, 316(7125):129. 10.1136/bmj.316.7125.129, 2665397, 9462320.
    • (1998) BMJ , vol.316 , Issue.7125 , pp. 129
    • Bland, J.M.1    Kerry, S.M.2
  • 99
    • 0344500841 scopus 로고    scopus 로고
    • A scan for linkage disequilibrium across the human genome
    • 1460700, 10430595
    • Huttley GA, Smith MW, Carrington M, O'Brien SJ. A scan for linkage disequilibrium across the human genome. Genetics 1999, 152:1711-1722. 1460700, 10430595.
    • (1999) Genetics , vol.152 , pp. 1711-1722
    • Huttley, G.A.1    Smith, M.W.2    Carrington, M.3    O'Brien, S.J.4
  • 100
    • 30444460720 scopus 로고    scopus 로고
    • Global landscape of recent inferred Darwinian selection for Homo sapiens
    • 10.1073/pnas.0509691102, 1317879, 16371466
    • Wang ET, Kodama G, Baidi P, Moyzis RK. Global landscape of recent inferred Darwinian selection for Homo sapiens. Proc Natl Acad Sci USA 2006, 103:135-140. 10.1073/pnas.0509691102, 1317879, 16371466.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 135-140
    • Wang, E.T.1    Kodama, G.2    Baidi, P.3    Moyzis, R.K.4
  • 101
    • 33644981509 scopus 로고    scopus 로고
    • A map of recent positive selection in the human genome
    • 10.1371/journal.pbio.0040072, 1382018, 16494531
    • Voight BF, Kudaravalli S, Wen X, Pritchard JK. A map of recent positive selection in the human genome. PLoS Biol 2006, 4:e72. 10.1371/journal.pbio.0040072, 1382018, 16494531.
    • (2006) PLoS Biol , vol.4
    • Voight, B.F.1    Kudaravalli, S.2    Wen, X.3    Pritchard, J.K.4
  • 104
    • 34547110828 scopus 로고    scopus 로고
    • A new approach for using genome scans to detect recent positive selection in the human genome
    • Tang K, Thornton KR, Stoneking M. A new approach for using genome scans to detect recent positive selection in the human genome. PLoS Biol 2007, 5:1587-1602.
    • (2007) PLoS Biol , vol.5 , pp. 1587-1602
    • Tang, K.1    Thornton, K.R.2    Stoneking, M.3
  • 106
  • 108
    • 46449121800 scopus 로고    scopus 로고
    • Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
    • 10.1101/gr.074187.107, 2493391, 18411405
    • Hellmann I, Mang Y, Gu ZP, Li P, de la Vega FM, Clark AG, Nielsen R. Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals. Genome Res 2008, 18:1020-1029. 10.1101/gr.074187.107, 2493391, 18411405.
    • (2008) Genome Res , vol.18 , pp. 1020-1029
    • Hellmann, I.1    Mang, Y.2    Gu, Z.P.3    Li, P.4    de la Vega, F.M.5    Clark, A.G.6    Nielsen, R.7
  • 111
    • 77649260327 scopus 로고    scopus 로고
    • Population differentiation as a test for selective sweeps
    • 10.1101/gr.100545.109, 2840981, 20086244
    • Chen H, Patterson N, Reich D. Population differentiation as a test for selective sweeps. Genome Res 2010, 20:393-402. 10.1101/gr.100545.109, 2840981, 20086244.
    • (2010) Genome Res , vol.20 , pp. 393-402
    • Chen, H.1    Patterson, N.2    Reich, D.3
  • 113
    • 0036911353 scopus 로고    scopus 로고
    • Interrogating a high-density SNP map for signatures of natural selection
    • 10.1101/gr.631202, 187574, 12466284
    • Akey JM, Zhang G, Zhang K, Jin L, Shriver MD. Interrogating a high-density SNP map for signatures of natural selection. Genome Res 2002, 12:1805-1814. 10.1101/gr.631202, 187574, 12466284.
    • (2002) Genome Res , vol.12 , pp. 1805-1814
    • Akey, J.M.1    Zhang, G.2    Zhang, K.3    Jin, L.4    Shriver, M.D.5


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