-
1
-
-
37749032917
-
The genetics of adaptive shape shift in stickleback: Pleiotropy and effect size
-
Albert AYK, Sawaya S, Vines TH, et al. (2008) The genetics of adaptive shape shift in stickleback: pleiotropy and effect size. Evolution, 62, 76-85.
-
(2008)
Evolution
, vol.62
, pp. 76-85
-
-
Albert, A.Y.K.1
Sawaya, S.2
Vines, T.H.3
-
2
-
-
37549017103
-
Convergence and parallelism reconsidered: What have we learned about the genetics of adaptation?
-
Arendt J, Reznick D, (2008) Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation? Trends in Ecology and Evolution, 23, 26-32.
-
(2008)
Trends in Ecology and Evolution
, vol.23
, pp. 26-32
-
-
Arendt, J.1
Reznick, D.2
-
3
-
-
54449098752
-
Rapid SNP discovery and genetic mapping using sequenced RAD markers
-
Baird NA, Etter PD, Atwood TS, et al. (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS ONE, 3, e3376.
-
(2008)
PLoS ONE
, vol.3
-
-
Baird, N.A.1
Etter, P.D.2
Atwood, T.S.3
-
4
-
-
0034731005
-
Genetic hitchhiking
-
Barton NH, (2000) Genetic hitchhiking. Philosophical Transactions of the Royal Society of London, Series B, Biological Sciences, 355, 1553-1562.
-
(2000)
Philosophical Transactions of the Royal Society of London, Series B, Biological Sciences
, vol.355
, pp. 1553-1562
-
-
Barton, N.H.1
-
5
-
-
84966160759
-
The barrier to genetic exchange between hybridizing populations
-
Barton N, Bengtsson BO, (1986) The barrier to genetic exchange between hybridizing populations. Heredity, 57, 357-376.
-
(1986)
Heredity
, vol.57
, pp. 357-376
-
-
Barton, N.1
Bengtsson, B.O.2
-
6
-
-
1642269679
-
Identifying adaptive genetic divergence among populations from genome scans
-
Beaumont MA, Balding DJ, (2004) Identifying adaptive genetic divergence among populations from genome scans. Molecular Ecology, 13, 969-980.
-
(2004)
Molecular Ecology
, vol.13
, pp. 969-980
-
-
Beaumont, M.A.1
Balding, D.J.2
-
7
-
-
54049094097
-
Natural selection drives patterns of lake-stream divergence in stickleback foraging morphology
-
Berner D, Adams DC, Grandchamp A-C, Hendry AP, (2008) Natural selection drives patterns of lake-stream divergence in stickleback foraging morphology. Journal of Evolutionary Biology, 21, 1653-1665.
-
(2008)
Journal of Evolutionary Biology
, vol.21
, pp. 1653-1665
-
-
Berner, D.1
Adams, D.C.2
Grandchamp, A.-C.3
Hendry, A.P.4
-
8
-
-
67649425415
-
Variable progress toward ecological speciation in parapatry: Stickleback across eight lake-stream transitions
-
Berner D, Grandchamp A-C, Hendry AP, (2009) Variable progress toward ecological speciation in parapatry: stickleback across eight lake-stream transitions. Evolution, 63, 1740-1753.
-
(2009)
Evolution
, vol.63
, pp. 1740-1753
-
-
Berner, D.1
Grandchamp, A.-C.2
Hendry, A.P.3
-
9
-
-
78449272899
-
Constraints on speciation suggested by comparing lake-stream stickleback divergence across two continents
-
Berner D, Roesti M, Hendry AP, Salzburger W, (2010) Constraints on speciation suggested by comparing lake-stream stickleback divergence across two continents. Molecular Ecology, 19, 4963-4978.
-
(2010)
Molecular Ecology
, vol.19
, pp. 4963-4978
-
-
Berner, D.1
Roesti, M.2
Hendry, A.P.3
Salzburger, W.4
-
10
-
-
80051671518
-
Quantitative genetic inheritance of morphological divergence in a lake-stream stickleback ecotype pair: Implications for reproductive isolation
-
Berner D, Kaeuffer R, Grandchamp A-C, et al. (2011) Quantitative genetic inheritance of morphological divergence in a lake-stream stickleback ecotype pair: implications for reproductive isolation. Journal of Evolutionary Biology, 24, 1975-1983.
-
(2011)
Journal of Evolutionary Biology
, vol.24
, pp. 1975-1983
-
-
Berner, D.1
Kaeuffer, R.2
Grandchamp, A.-C.3
-
11
-
-
77958565484
-
The distinctive footprints of local hitchhiking in a varied environment and global hitchhiking in a subdivided population
-
Bierne N, (2010) The distinctive footprints of local hitchhiking in a varied environment and global hitchhiking in a subdivided population. Evolution, 64, 3254-3272.
-
(2010)
Evolution
, vol.64
, pp. 3254-3272
-
-
Bierne, N.1
-
12
-
-
40849106874
-
Recombination map of the common shrew, Sorex araneus (eulipotyphla, mammalia)
-
Borodin PM, Karamysheva TV, Belonogova NM, et al. (2008) Recombination map of the common shrew, Sorex araneus (eulipotyphla, mammalia). Genetics, 178, 621-632.
-
(2008)
Genetics
, vol.178
, pp. 621-632
-
-
Borodin, P.M.1
Karamysheva, T.V.2
Belonogova, N.M.3
-
13
-
-
84857191279
-
An SNP-based linkage map for zebrafish reveals sex determination loci
-
Bradley KM, Breyer JP, Melville DB, et al. (2011) An SNP-based linkage map for zebrafish reveals sex determination loci. G3: Genes, Genomes, Genetics, 1, 3-9.
-
(2011)
G3: Genes, Genomes, Genetics
, vol.1
, pp. 3-9
-
-
Bradley, K.M.1
Breyer, J.P.2
Melville, D.B.3
-
14
-
-
24744452988
-
Recombination and speciation
-
Butlin RK, (2005) Recombination and speciation. Molecular Ecology, 14, 2621-2635.
-
(2005)
Molecular Ecology
, vol.14
, pp. 2621-2635
-
-
Butlin, R.K.1
-
15
-
-
0031901554
-
Measures of divergence between populations and the effect of forces that reduce variability
-
Charlesworth B, (1998) Measures of divergence between populations and the effect of forces that reduce variability. Molecular Biology and Evolution, 15, 538-543.
-
(1998)
Molecular Biology and Evolution
, vol.15
, pp. 538-543
-
-
Charlesworth, B.1
-
16
-
-
0031450133
-
The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations
-
Charlesworth B, Nordborg M, Charlesworth D, (1997) The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations. Genetical Research, 70, 155-174.
-
(1997)
Genetical Research
, vol.70
, pp. 155-174
-
-
Charlesworth, B.1
Nordborg, M.2
Charlesworth, D.3
-
17
-
-
70349659703
-
Genetic analysis of variation in human meiotic recombination
-
Chowdhury R, Bois PRJ, Feingold E, Sherman SL, Cheung VG, (2009) Genetic analysis of variation in human meiotic recombination. PLoS Genetics, 5, e1000648.
-
(2009)
PLoS Genetics
, vol.5
-
-
Chowdhury, R.1
Bois, P.R.J.2
Feingold, E.3
Sherman, S.L.4
Cheung, V.G.5
-
18
-
-
20144371089
-
Widespread parallel evolution in sticklebacks by repeated fixation of ectodysplasin alleles
-
Colosimo PF, Hosemann KE, Balabhadra S, et al. (2005) Widespread parallel evolution in sticklebacks by repeated fixation of ectodysplasin alleles. Science, 307, 1928-1933.
-
(2005)
Science
, vol.307
, pp. 1928-1933
-
-
Colosimo, P.F.1
Hosemann, K.E.2
Balabhadra, S.3
-
19
-
-
3042750437
-
-
Sinauer Associates, Sunderland, Massachusetts.
-
Coyne JA, Orr HA, (2004) Speciation. Sinauer Associates, Sunderland, Massachusetts.
-
(2004)
Speciation
-
-
Coyne, J.A.1
Orr, H.A.2
-
21
-
-
0003527996
-
-
Princeton University, Princeton, New Jersey.
-
Endler JA, (1977) Geographic Variation, Speciation, and Clines. Princeton University, Princeton, New Jersey.
-
(1977)
Geographic Variation, Speciation, and Clines
-
-
Endler, J.A.1
-
22
-
-
70349506039
-
Detecting loci under selection in a hierarchically structured population
-
Excoffier L, Hofer T, Foll M, (2009) Detecting loci under selection in a hierarchically structured population. Heredity, 103, 285-298.
-
(2009)
Heredity
, vol.103
, pp. 285-298
-
-
Excoffier, L.1
Hofer, T.2
Foll, M.3
-
23
-
-
70450196529
-
Chromosomal inversions and species differences: When are genes affecting adaptive divergence and reproductive isolation expected to reside within inversions?
-
Feder JL, Nosil P, (2009) Chromosomal inversions and species differences: when are genes affecting adaptive divergence and reproductive isolation expected to reside within inversions? Evolution, 63, 3061-3075.
-
(2009)
Evolution
, vol.63
, pp. 3061-3075
-
-
Feder, J.L.1
Nosil, P.2
-
24
-
-
77952690357
-
The efficacy of divergence hitchhiking in generating genomic islands during ecological speciation
-
Feder JL, Nosil P, (2010) The efficacy of divergence hitchhiking in generating genomic islands during ecological speciation. Evolution, 64, 1729-1747.
-
(2010)
Evolution
, vol.64
, pp. 1729-1747
-
-
Feder, J.L.1
Nosil, P.2
-
25
-
-
58149347836
-
A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: A Bayesian perspective
-
Foll M, Gaggiotti O, (2008) A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics, 180, 977-993.
-
(2008)
Genetics
, vol.180
, pp. 977-993
-
-
Foll, M.1
Gaggiotti, O.2
-
27
-
-
79960697527
-
The genetic basis of divergent pigment patterns in juvenile threespine sticklebacks
-
Greenwood AK, Jones FC, Chan YF, et al. (2011) The genetic basis of divergent pigment patterns in juvenile threespine sticklebacks. Heredity, 107, 155-166.
-
(2011)
Heredity
, vol.107
, pp. 155-166
-
-
Greenwood, A.K.1
Jones, F.C.2
Chan, Y.F.3
-
28
-
-
7544219876
-
How much of the variation in adaptive divergence can be explained by gene flow? An evaluation using lake-stream stickleback pairs
-
Hendry AP, Taylor EB, (2004) How much of the variation in adaptive divergence can be explained by gene flow? An evaluation using lake-stream stickleback pairs Evolution, 58, 2319-2331.
-
(2004)
Evolution
, vol.58
, pp. 2319-2331
-
-
Hendry, A.P.1
Taylor, E.B.2
-
29
-
-
0035989033
-
Adaptive divergence and the balance between selection and gene flow: Lake and stream stickleback in the Misty system
-
Hendry AP, Taylor EB, McPhail JD, (2002) Adaptive divergence and the balance between selection and gene flow: lake and stream stickleback in the Misty system. Evolution, 56, 1199-1216.
-
(2002)
Evolution
, vol.56
, pp. 1199-1216
-
-
Hendry, A.P.1
Taylor, E.B.2
McPhail, J.D.3
-
30
-
-
58549086375
-
Revisiting the impact of inversions in evolution: From population genetic markers to drivers of adaptive shifts and speciation?
-
Hoffmann AA, Rieseberg LH, (2008) Revisiting the impact of inversions in evolution: from population genetic markers to drivers of adaptive shifts and speciation? Annual Review of Ecology and Systematics, 39, 21-42.
-
(2008)
Annual Review of Ecology and Systematics
, vol.39
, pp. 21-42
-
-
Hoffmann, A.A.1
Rieseberg, L.H.2
-
31
-
-
77649219524
-
Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
-
Hohenlohe PA, Bassham S, Etter PD, et al. (2010) Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. PLoS Genetics, 6, e1000862.
-
(2010)
PLoS Genetics
, vol.6
-
-
Hohenlohe, P.A.1
Bassham, S.2
Etter, P.D.3
-
32
-
-
84255187780
-
Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes
-
Hohenlohe PA, Bassham S, Currey M, Cresko WA, (2012) Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes. Philosophical Transactions of the Royal Society B, Biological Sciences, 367, 395-408.
-
(2012)
Philosophical Transactions of the Royal Society B, Biological Sciences
, vol.367
, pp. 395-408
-
-
Hohenlohe, P.A.1
Bassham, S.2
Currey, M.3
Cresko, W.A.4
-
33
-
-
1842717957
-
Comparative recombination rates in the rat, mouse, and human genomes
-
Jensen-Seaman MI, Furey TS, Payseur BA, et al. (2004) Comparative recombination rates in the rat, mouse, and human genomes. Genome Research, 14, 528-538.
-
(2004)
Genome Research
, vol.14
, pp. 528-538
-
-
Jensen-Seaman, M.I.1
Furey, T.S.2
Payseur, B.A.3
-
34
-
-
84855708550
-
A genome-wide SNP genotyping array reveals patterns of global and repeated Species-pair divergence in sticklebacks
-
Jones FC, Chan YF, Schmutz J, et al. (2012) A genome-wide SNP genotyping array reveals patterns of global and repeated Species-pair divergence in sticklebacks. Current Biology, 22, 83-90.
-
(2012)
Current Biology
, vol.22
, pp. 83-90
-
-
Jones, F.C.1
Chan, Y.F.2
Schmutz, J.3
-
35
-
-
84856270961
-
Parallel and nonparallel aspects of ecological, phenotypic, and genetic divergence across replicate population pairs of lake and stream stickleback
-
Kaeuffer R, Peichel C, Bolnick DI, Hendry AP, (2011) Parallel and nonparallel aspects of ecological, phenotypic, and genetic divergence across replicate population pairs of lake and stream stickleback. Evolution, 66, 402-418.
-
(2011)
Evolution
, vol.66
, pp. 402-418
-
-
Kaeuffer, R.1
Peichel, C.2
Bolnick, D.I.3
Hendry, A.P.4
-
36
-
-
0024372736
-
The hitchhiking effect revisited
-
Kaplan NL, Hudson RR, Langley CH, (1989) The hitchhiking effect revisited. Genetics, 123, 887-899.
-
(1989)
Genetics
, vol.123
, pp. 887-899
-
-
Kaplan, N.L.1
Hudson, R.R.2
Langley, C.H.3
-
37
-
-
33744466839
-
Chromosome inversions, local adaptation and speciation
-
Kirkpatrick M, Barton N, (2006) Chromosome inversions, local adaptation and speciation. Genetics, 173, 419-434.
-
(2006)
Genetics
, vol.173
, pp. 419-434
-
-
Kirkpatrick, M.1
Barton, N.2
-
38
-
-
0027444450
-
Parapatric lake and stream sticklebacks on northern Vancouver Island: Disjunct distribution or parallel evolution?
-
Lavin PA, McPhail JD, (1993) Parapatric lake and stream sticklebacks on northern Vancouver Island: disjunct distribution or parallel evolution? Canadian Journal of Zoology, 71, 11-17.
-
(1993)
Canadian Journal of Zoology
, vol.71
, pp. 11-17
-
-
Lavin, P.A.1
McPhail, J.D.2
-
39
-
-
77958184872
-
Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences
-
Lawniczak MKN, Emrich SJ, Holloway AK, et al. (2010) Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences. Science, 330, 512-514.
-
(2010)
Science
, vol.330
, pp. 512-514
-
-
Lawniczak, M.K.N.1
Emrich, S.J.2
Holloway, A.K.3
-
40
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, et al. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics, 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
-
41
-
-
34547691650
-
Quantifying the constraining influence of gene flow on adaptive divergence in the lake-stream threespine stickleback system
-
Moore JS, Gow JL, Taylor EB, Hendry AP, (2007) Quantifying the constraining influence of gene flow on adaptive divergence in the lake-stream threespine stickleback system. Evolution, 61, 2015-2026.
-
(2007)
Evolution
, vol.61
, pp. 2015-2026
-
-
Moore, J.S.1
Gow, J.L.2
Taylor, E.B.3
Hendry, A.P.4
-
42
-
-
70349866687
-
ShortRead: A bioconductor package for input, quality assessment and exploration of high-throughput sequence data
-
Morgan M, Anders S, Lawrence M, et al. (2009) ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinformatics, 25, 2607-2608.
-
(2009)
Bioinformatics
, vol.25
, pp. 2607-2608
-
-
Morgan, M.1
Anders, S.2
Lawrence, M.3
-
43
-
-
0019346542
-
DNA polymorphism detectable by restriction endonucleases
-
Nei M, Tajima F, (1981) DNA polymorphism detectable by restriction endonucleases. Genetics, 97, 145-163.
-
(1981)
Genetics
, vol.97
, pp. 145-163
-
-
Nei, M.1
Tajima, F.2
-
44
-
-
29444452921
-
Molecular signatures of natural selection
-
Nielsen R, (2005) Molecular signatures of natural selection. Annual Review of Genetics, 39, 197-218.
-
(2005)
Annual Review of Genetics
, vol.39
, pp. 197-218
-
-
Nielsen, R.1
-
45
-
-
70450233628
-
Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species
-
Noor MAF, Bennett SM, (2009) Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species Heredity, 103, 439-444.
-
(2009)
Heredity
, vol.103
, pp. 439-444
-
-
Noor, M.A.F.1
Bennett, S.M.2
-
47
-
-
58749092473
-
Divergent selection and heterogeneous genomic divergence
-
Nosil P, Funk DJ, Ortiz-Barrientos D, (2009) Divergent selection and heterogeneous genomic divergence. Molecular Ecology, 18, 375-402.
-
(2009)
Molecular Ecology
, vol.18
, pp. 375-402
-
-
Nosil, P.1
Funk, D.J.2
Ortiz-Barrientos, D.3
-
48
-
-
0035924332
-
The genetic architecture of divergence between threespine stickleback species
-
Peichel CL, Nereng KS, Oghi KA, et al. (2001) The genetic architecture of divergence between threespine stickleback species. Nature, 414, 901-905.
-
(2001)
Nature
, vol.414
, pp. 901-905
-
-
Peichel, C.L.1
Nereng, K.S.2
Oghi, K.A.3
-
49
-
-
79951480123
-
-
R Development Core Team. R Foundation for Statistical Computing, Vienna, Austria.
-
R Development Core Team (2010) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
-
(2010)
R: A Language and Environment for Statistical Computing
-
-
-
50
-
-
0000942989
-
Multivariate differentiation of parapatric and allopatric populations of threespine stickleback in the Sangan River watershed, Queen Charlotte Islands
-
Reimchen TE, Stinson EM, Nelson JS, (1985) Multivariate differentiation of parapatric and allopatric populations of threespine stickleback in the Sangan River watershed, Queen Charlotte Islands. Canadian Journal of Zoology, 63, 2944-2951.
-
(1985)
Canadian Journal of Zoology
, vol.63
, pp. 2944-2951
-
-
Reimchen, T.E.1
Stinson, E.M.2
Nelson, J.S.3
-
51
-
-
61849143272
-
Recombinational landscape and population genomics of Caenorhabditis elegans
-
Rockman MV, Kruglyak L, (2009) Recombinational landscape and population genomics of Caenorhabditis elegans. PLoS Genetics, 5, e1000419.
-
(2009)
PLoS Genetics
, vol.5
-
-
Rockman, M.V.1
Kruglyak, L.2
-
52
-
-
55749090074
-
Molecular cytogenetic evidence of rearrangements on the y chromosome of the threespine stickleback fish
-
Ross JA, Peichel CL, (2008) Molecular cytogenetic evidence of rearrangements on the Y chromosome of the threespine stickleback fish. Genetics, 179, 2173-2182.
-
(2008)
Genetics
, vol.179
, pp. 2173-2182
-
-
Ross, J.A.1
Peichel, C.L.2
-
53
-
-
0034543995
-
Dualism and conflicts in understanding speciation
-
Schilthuizen M, (2000) Dualism and conflicts in understanding speciation. BioEssays, 22, 1134-1141.
-
(2000)
BioEssays
, vol.22
, pp. 1134-1141
-
-
Schilthuizen, M.1
-
54
-
-
55949114908
-
Genetic and environmental contributions to the morphology of lake and stream stickleback: Implications for gene flow and reproductive isolation
-
Sharpe DMT, Räsänen K, Berner D, Hendry AP, (2008) Genetic and environmental contributions to the morphology of lake and stream stickleback: implications for gene flow and reproductive isolation. Evolutionary Ecology Research, 10, 849-866.
-
(2008)
Evolutionary Ecology Research
, vol.10
, pp. 849-866
-
-
Sharpe, D.M.T.1
Räsänen, K.2
Berner, D.3
Hendry, A.P.4
-
55
-
-
0031825318
-
Genetic hitch-hiking in a subdivided population
-
Slatkin M, Wiehe T, (1998) Genetic hitch-hiking in a subdivided population. Genetical Research, 71, 155-160.
-
(1998)
Genetical Research
, vol.71
, pp. 155-160
-
-
Slatkin, M.1
Wiehe, T.2
-
56
-
-
75149129710
-
The biology of speciation
-
Sobel JM, Chen GF, Watt LR, Schemske DW, (2010) The biology of speciation. Evolution, 64, 295-315.
-
(2010)
Evolution
, vol.64
, pp. 295-315
-
-
Sobel, J.M.1
Chen, G.F.2
Watt, L.R.3
Schemske, D.W.4
-
57
-
-
14844313712
-
Using genome scans of DNA polymorphism to infer adaptive population divergence
-
Storz JF, (2005) Using genome scans of DNA polymorphism to infer adaptive population divergence. Molecular Ecology, 14, 671-688.
-
(2005)
Molecular Ecology
, vol.14
, pp. 671-688
-
-
Storz, J.F.1
-
58
-
-
0031408489
-
Parallel evolution of lake-stream pairs of threespine sticklebacks (Gasterosteus) inferred from mitochondrial DNA variation
-
Thompson CE, Taylor EB, McPhail JD, (1997) Parallel evolution of lake-stream pairs of threespine sticklebacks (Gasterosteus) inferred from mitochondrial DNA variation. Evolution, 51, 1955-1965.
-
(1997)
Evolution
, vol.51
, pp. 1955-1965
-
-
Thompson, C.E.1
Taylor, E.B.2
McPhail, J.D.3
-
60
-
-
80054918872
-
Karyotype differentiation between two stickleback species (Gasterosteidae)
-
Urton JR, McCann SM, Peichel CL, (2011) Karyotype differentiation between two stickleback species (Gasterosteidae). Cytogenetic and Genome Research, 135, 150-159.
-
(2011)
Cytogenetic and Genome Research
, vol.135
, pp. 150-159
-
-
Urton, J.R.1
McCann, S.M.2
Peichel, C.L.3
-
62
-
-
52649091697
-
The genetic mosaic suggests a new role for hitchhiking in ecological speciation
-
Via S, West J, (2008) The genetic mosaic suggests a new role for hitchhiking in ecological speciation. Molecular Ecology, 17, 4334-4345.
-
(2008)
Molecular Ecology
, vol.17
, pp. 4334-4345
-
-
Via, S.1
West, J.2
|