PGDSpider: An automated data conversion tool for connecting population genetics and genomics programs

Bioinformatics

Volumn 28, Issue 2, 2012, Pages 298-299

  Lischer, H E L ^a,b   Excoffier, L ^a,b  

^a UNIVERSITY OF BERN   (Switzerland)

^b SWISS INSTITUTE OF BIOINFORMATICS   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER INTERFACE; COMPUTER PROGRAM; GENOMICS; INFORMATION RETRIEVAL; POPULATION GENETICS;

GENETICS, POPULATION; GENOMICS; INFORMATION STORAGE AND RETRIEVAL; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 84856088655     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr642     Document Type: Article

References (11)

1. Altshuler,D.L. et al. (2010) A map of human genome variation from population-scale sequencing. Nature, 467, 1061-1073.
2. Coombs,J.A. et al. (2008) CREATE: a software to create input files from diploid genotypic data for 52 genetic software programs. Mol. Ecol. Resour., 8, 578-580.
3. Excoffier,L. and Heckel,G. (2006) Computer programs for population genetics data analysis: a survival guide. Nat. Rev. Genet., 7, 745-758.
4. Excoffier,L. and Lischer,H.E.L. (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour., 10, 564-567.
5. Glaubitz,J.C. (2004) CONVERT: a user-friendly program to reformat diploid genotypic data for commonly used population genetic software packages. Mol. Ecol. Notes, 4, 309-310.
6. Gompert,Z. et al. (2010) Bayesian analysis of molecular variance in pyrosequences quantifies population genetic structure across the genome of Lycaeides butterflies. Mol. Ecol., 19, 2455-2473.
7. Hohenlohe,P.A. et al. (2010) Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. Plos Genet., 6, e1000862.
8. Li,H. et al. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics, 25, 2078-2079.
9. Manoukis,N.C. (2007) FORMATOMATIC: a program for converting diploid allelic data between common formats for population genetic analysis. Mol. Ecol. Notes, 7, 592-593.
10. Metzker,M.L. (2010) Applications of next-generation sequencing sequencing technologies - the next generation. Nat. Rev. Genet., 11, 31-46.
11. Tamura,K. et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol., 28, 2731-2739.