메뉴 건너뛰기




Volumn 9, Issue 3, 2014, Pages

Analysis of the intestinal lumen microbiota in an animal model of colorectal cancer

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

EID: 84897124480     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0090849     Document Type: Article
Times cited : (181)

References (45)
  • 2
    • 84863022950 scopus 로고    scopus 로고
    • Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
    • Kostic AD, Gevers D, Pedamallu CS, Michaud M, Duke F, et al. (2012) Genomic analysis identifies association of Fusobacterium with colorectal carcinoma. Genome Res 22: 292-298.
    • (2012) Genome Res , vol.22 , pp. 292-298
    • Kostic, A.D.1    Gevers, D.2    Pedamallu, C.S.3    Michaud, M.4    Duke, F.5
  • 4
    • 69249090079 scopus 로고    scopus 로고
    • The search for infectious causes of human cancers: Where and why
    • Zur Hausen H (2009) The search for infectious causes of human cancers: where and why. Virology 392: 1-10.
    • (2009) Virology , vol.392 , pp. 1-10
    • Zur Hausen, H.1
  • 5
    • 32944466887 scopus 로고    scopus 로고
    • Ecological and evolutionary forces shaping microbial diversity in the human intestine
    • DOI 10.1016/j.cell.2006.02.017, PII S0092867406001929
    • Ley RE, Peterson DA, Gordon JI (2006) Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124: 837-848. (Pubitemid 43261456)
    • (2006) Cell , vol.124 , Issue.4 , pp. 837-848
    • Ley, R.E.1    Peterson, D.A.2    Gordon, J.I.3
  • 7
    • 84872383288 scopus 로고    scopus 로고
    • The role of bacteria in the pathogenesis of ulcerative colitis
    • Sasaki M, Klapproth JM (2012) The role of bacteria in the pathogenesis of ulcerative colitis. J Signal Transduct 2012: 704953.
    • (2012) J Signal Transduct , vol.2012 , pp. 704953
    • Sasaki, M.1    Klapproth, J.M.2
  • 8
    • 80054036384 scopus 로고    scopus 로고
    • Intestinal dysbiosis in inflammatory bowel disease
    • Kaur N, Chen CC, Luther J, Kao JY (2011) Intestinal dysbiosis in inflammatory bowel disease. Gut Microbes 2: 211-216.
    • (2011) Gut Microbes , vol.2 , pp. 211-216
    • Kaur, N.1    Chen, C.C.2    Luther, J.3    Kao, J.Y.4
  • 10
    • 78651401198 scopus 로고    scopus 로고
    • Human intestinal microbiota: Cross-talk with the host and its potential role in colorectal cancer
    • Candela M, Guidotti M, Fabbri A, Brigidi P, Franceschi C, et al. (2011) Human intestinal microbiota: cross-talk with the host and its potential role in colorectal cancer. Crit Rev Microbiol 37: 1-14.
    • (2011) Crit Rev Microbiol , vol.37 , pp. 1-14
    • Candela, M.1    Guidotti, M.2    Fabbri, A.3    Brigidi, P.4    Franceschi, C.5
  • 11
    • 80054905060 scopus 로고    scopus 로고
    • The Human Microbiome Project in 2011 and beyond
    • Proctor LM (2011) The Human Microbiome Project in 2011 and beyond. Cell Host Microbe 10: 287-291.
    • (2011) Cell Host Microbe , vol.10 , pp. 287-291
    • Proctor, L.M.1
  • 12
    • 77955238861 scopus 로고    scopus 로고
    • Structural shifts of gut microbiota as surrogate endpoints for monitoring host health changes induced by carcinogen exposure
    • Wei H, Dong L, Wang T, Zhang M, Hua W, et al. (2010) Structural shifts of gut microbiota as surrogate endpoints for monitoring host health changes induced by carcinogen exposure. FEMS Microbiol Ecol 73: 577-586.
    • (2010) FEMS Microbiol Ecol , vol.73 , pp. 577-586
    • Wei, H.1    Dong, L.2    Wang, T.3    Zhang, M.4    Hua, W.5
  • 13
    • 0029084396 scopus 로고
    • Intestinal floras of populations that have a high risk of colon cancer
    • Moore WE, Moore LH (1995) Intestinal floras of populations that have a high risk of colon cancer. Appl Environ Microbiol 61: 3202-3207.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 3202-3207
    • Moore, W.E.1    Moore, L.H.2
  • 14
    • 0032755259 scopus 로고    scopus 로고
    • Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
    • Suau A, Bonnet R, Sutren M, Godon JJ, Gibson GR, et al. (1999) Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Microbiol 65: 4799-4807.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4799-4807
    • Suau, A.1    Bonnet, R.2    Sutren, M.3    Godon, J.J.4    Gibson, G.R.5
  • 15
    • 84884516482 scopus 로고    scopus 로고
    • Next-generation sequencing technologies and their impact on microbial genomics
    • Forde BM, O'Toole PW (2013) Next-generation sequencing technologies and their impact on microbial genomics. Brief Funct Genomics. 12: 440-453.
    • (2013) Brief Funct Genomics , vol.12 , pp. 440-453
    • Forde, B.M.1    O'Toole, P.W.2
  • 16
  • 17
    • 84862997111 scopus 로고    scopus 로고
    • Human intestinal lumen and mucosa-associated microbiota in patients with colorectal cancer
    • Chen W, Liu F, Ling Z, Tong X, Xiang C (2012) Human intestinal lumen and mucosa-associated microbiota in patients with colorectal cancer. PLoS One 7: e39743.
    • (2012) PLoS One , vol.7
    • Chen, W.1    Liu, F.2    Ling, Z.3    Tong, X.4    Xiang, C.5
  • 21
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • DOI 10.1128/AEM.00062-07
    • Wang Q, Garrity GM, TiedjeJM Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267. (Pubitemid 47326658)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.16 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 23
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, community supported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: open-source, platform-independent, community supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5
  • 24
    • 84868580867 scopus 로고    scopus 로고
    • Rodent models to study the relationships between mammals and their bacterial inhabitants
    • Bibiloni R (2012) Rodent models to study the relationships between mammals and their bacterial inhabitants. Gut Microbes 3: 536-543.
    • (2012) Gut Microbes , vol.3 , pp. 536-543
    • Bibiloni, R.1
  • 25
    • 78650118403 scopus 로고    scopus 로고
    • The struggle within: Microbial influences on colorectal cancer
    • Arthur JC, Jobin C (2011) The struggle within: microbial influences on colorectal cancer. Inflamm Bowel Dis 17: 396-409.
    • (2011) Inflamm Bowel Dis , vol.17 , pp. 396-409
    • Arthur, J.C.1    Jobin, C.2
  • 26
    • 84855923925 scopus 로고    scopus 로고
    • Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers
    • Wang T, Cai G, Qiu Y, Fei N, Zhang M, et al. (2012) Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers. ISME J 6: 320-329.
    • (2012) ISME J , vol.6 , pp. 320-329
    • Wang, T.1    Cai, G.2    Qiu, Y.3    Fei, N.4    Zhang, M.5
  • 27
    • 2342442430 scopus 로고    scopus 로고
    • Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease
    • DOI 10.1136/gut.2003.025403
    • OttSJ, Musfeldt M, Wenderoth DF, Hampe J, Brant O, et al. (2004) Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease. Gut 53: 685-693. (Pubitemid 38561447)
    • (2004) Gut , vol.53 , Issue.5 , pp. 685-693
    • Ott, S.J.1    Musfeldt, M.2    Wenderoth, D.F.3    Hampe, J.4    Brant, O.5    Folsch, U.R.6    Timmis, K.N.7    Schreiber, S.8
  • 30
    • 69949120571 scopus 로고    scopus 로고
    • A human colonic commensal promotes colon tumorigenesis via activation of T helper type 17 T cell responses
    • Wu S, Rhee KJ, Albesiano E, Rabizadeh S, Wu X, et al. (2009) A human colonic commensal promotes colon tumorigenesis via activation of T helper type 17 T cell responses. Nat Med 15: 1016-1022.
    • (2009) Nat Med , vol.15 , pp. 1016-1022
    • Wu, S.1    Rhee, K.J.2    Albesiano, E.3    Rabizadeh, S.4    Wu, X.5
  • 31
    • 55949129085 scopus 로고    scopus 로고
    • Molecular-phylogenetic characterization of microbial communities imbalances in the small intestine of dogs with inflammatory bowel disease
    • Xenoulis PG, Palculict B, Allenspach K, Steiner JM, Van House AM, et al. (2008) Molecular-phylogenetic characterization of microbial communities imbalances in the small intestine of dogs with inflammatory bowel disease. FEMS Microbiol Ecol 66: 579-589.
    • (2008) FEMS Microbiol Ecol , vol.66 , pp. 579-589
    • Xenoulis, P.G.1    Palculict, B.2    Allenspach, K.3    Steiner, J.M.4    Van House, A.M.5
  • 32
    • 77950859427 scopus 로고    scopus 로고
    • Bacterial secretion systems with an emphasis on the chlamydial Type III secretion system
    • Beeckman DS, Vanrompay DC (2010) Bacterial secretion systems with an emphasis on the chlamydial Type III secretion system. Curr Issues Mol Biol 12: 17-41.
    • (2010) Curr Issues Mol Biol , vol.12 , pp. 17-41
    • Beeckman, D.S.1    Vanrompay, D.C.2
  • 33
    • 33845874101 scopus 로고    scopus 로고
    • An obesity-associated gut microbiome with increased capacity for energy harvest
    • DOI 10.1038/nature05414, PII NATURE05414
    • Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, et al. (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444: 1027-1031. (Pubitemid 46018515)
    • (2006) Nature , vol.444 , Issue.7122 , pp. 1027-1031
    • Turnbaugh, P.J.1    Ley, R.E.2    Mahowald, M.A.3    Magrini, V.4    Mardis, E.R.5    Gordon, J.I.6
  • 34
    • 84866168894 scopus 로고    scopus 로고
    • Functional interactions between the gut microbiota and host metabolism
    • Tremaroli V, Bäckhed F (2012) Functional interactions between the gut microbiota and host metabolism. Nature 489: 242-249.
    • (2012) Nature , vol.489 , pp. 242-249
    • Tremaroli, V.1    Bäckhed, F.2
  • 35
    • 0019940133 scopus 로고
    • Utilization of nutrients by isolated epithelial cells of the rat colon
    • Roediger WE (1982) Utilization of nutrients by isolated epithelial cells of the rat colon. Gastroenterology 83: 424-429.
    • (1982) Gastroenterology , vol.83 , pp. 424-429
    • Roediger, W.E.1
  • 36
    • 33847233644 scopus 로고    scopus 로고
    • Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces
    • Duncan SH, Belenguer A, Holtrop G, Johnstone AM, Flint HJ, et al. (2007) Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces. Appl Environ Microbiol 73: 1073-1078.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 1073-1078
    • Duncan, S.H.1    Belenguer, A.2    Holtrop, G.3    Johnstone, A.M.4    Flint, H.J.5
  • 38
    • 51549105064 scopus 로고    scopus 로고
    • Association of enterotoxigenic Bacteroides fragilis infection with inflammatory diarrhea
    • Sears CL, Islam S, Saha A, Arjumand M, Alam NH, et al. (2008) Association of enterotoxigenic Bacteroides fragilis infection with inflammatory diarrhea. Clin Infect Dis 47: 797-803.
    • (2008) Clin Infect Dis , vol.47 , pp. 797-803
    • Sears, C.L.1    Islam, S.2    Saha, A.3    Arjumand, M.4    Alam, N.H.5
  • 39
    • 43849095105 scopus 로고    scopus 로고
    • The ecology and biotechnology of sulphate-reducing bacteria
    • DOI 10.1038/nrmicro1892, PII NRMICRO1892
    • Muyzer G, Stams AJ (2008) The ecology and biotechnology of sulphate-reducing bacteria. Nat Rev Microbiol 6: 441-454. (Pubitemid 351696438)
    • (2008) Nature Reviews Microbiology , vol.6 , Issue.6 , pp. 441-454
    • Muyzer, G.1    Stams, A.J.M.2
  • 41
    • 78651254481 scopus 로고    scopus 로고
    • Acute appendicitis is characterised by local invasion with Fusobacterium nucleatum/necrophorum
    • Swidsinski A, Dörffel Y, Loening-Baucke V, Theissig F, Rückert JC, et al. (2011) Acute appendicitis is characterised by local invasion with Fusobacterium nucleatum/necrophorum. Gut 60: 34-40.
    • (2011) Gut , vol.60 , pp. 34-40
    • Swidsinski, A.1    Dörffel, Y.2    Loening-Baucke, V.3    Theissig, F.4    Rückert, J.C.5
  • 42
    • 83255187024 scopus 로고    scopus 로고
    • Fusobacterium nucleatum: An emerging gut pathogen
    • Allen-Vercoe E, Strauss J, Chadee K (2011) Fusobacterium nucleatum: an emerging gut pathogen. Gut Microbes 2: 294-298.
    • (2011) Gut Microbes , vol.2 , pp. 294-298
    • Allen-Vercoe, E.1    Strauss, J.2    Chadee, K.3
  • 43
    • 79959474060 scopus 로고    scopus 로고
    • Invasive potential of gut mucosa-derived Fusobacterium nucleatum positively correlates with IBD status of the host
    • Strauss J, Kaplan GG, Beck PL, Rioux K, Panaccione R, et al. (2011) Invasive potential of gut mucosa-derived Fusobacterium nucleatum positively correlates with IBD status of the host. Inflamm Bowel Dis 17: 1971-1978.
    • (2011) Inflamm Bowel Dis , vol.17 , pp. 1971-1978
    • Strauss, J.1    Kaplan, G.G.2    Beck, P.L.3    Rioux, K.4    Panaccione, R.5
  • 44
    • 60149113101 scopus 로고    scopus 로고
    • Phenotypic and genotypic analyses of clinical Fusobacterium nucleatum and Fusobacterium periodonticum isolates from the human gut
    • Strauss J, White A, Ambrose C, McDonald J, Allen-Vercoe E (2008) Phenotypic and genotypic analyses of clinical Fusobacterium nucleatum and Fusobacterium periodonticum isolates from the human gut. Anaerobe 14: 301-309.
    • (2008) Anaerobe , vol.14 , pp. 301-309
    • Strauss, J.1    White, A.2    Ambrose, C.3    McDonald, J.4    Allen-Vercoe, E.5
  • 45
    • 79959438740 scopus 로고    scopus 로고
    • Fusobacterium nucleatum infection of colonic cells stimulates MUC2 mucin and tumor necrosis factor alpha
    • Dharmani P, Strauss J, Ambrose C, Allen-Vercoe E, Chadee K (2011) Fusobacterium nucleatum infection of colonic cells stimulates MUC2 mucin and tumor necrosis factor alpha. Infect Immun 79: 2597-2607.
    • (2011) Infect Immun , vol.79 , pp. 2597-2607
    • Dharmani, P.1    Strauss, J.2    Ambrose, C.3    Allen-Vercoe, E.4    Chadee, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.