Enhancement in xylose utilization using Kluyveromyces marxianus NIRE-K1 through evolutionary adaptation approach

Bioprocess and Biosystems Engineering

Volumn 39, Issue 5, 2016, Pages 835-843

  Sharma, Nilesh Kumar ^a,b   Behera, Shuvashish ^a   Arora, Richa ^a,b   Kumar, Sachin ^a  

^a Sardar Swaran Singh National Institute of Bio Energy   (India)

^b I K GUJRAL PUNJAB TECHNICAL UNIVERSITY   (India)

Author keywords

Ethanol; Evolutionary adaptation; Kluyveromyces marxianus; Lignocelluloses; Xylitol; Xylose

Indexed keywords

ETHANOL; SUGAR SUBSTITUTES; XYLOSE;

EVOLUTIONARY ADAPTATION; KLUYVEROMYCES MARXIANUS; LIGNOCELLULOSES; LIGNOCELLULOSIC ETHANOLS; SPECIFIC GROWTH RATE; THERMOTOLERANT YEASTS; XYLITOL; XYLOSE UTILIZATIONS;

YEAST;

ALCOHOL; BIOETHANOL; LIGNOCELLULOSE; XYLITOL; XYLOSE;

ABSORPTION LAG TIME; ADAPTATION; ALCOHOL PRODUCTION; ARTICLE; BATCH FERMENTATION; EVOLUTIONARY ADAPTATION; GROWTH RATE; KLUYVEROMYCES MARXIANUS; NONHUMAN; PRIORITY JOURNAL; SUGAR INTAKE; AEROBIC METABOLISM; ANAEROBIC GROWTH; EVOLUTION; FERMENTATION; GROWTH, DEVELOPMENT AND AGING; KINETICS; KLUYVEROMYCES; METABOLISM;

AEROBIOSIS; ANAEROBIOSIS; BIOLOGICAL EVOLUTION; FERMENTATION; KINETICS; KLUYVEROMYCES; XYLOSE;

EID: 84958763166     PISSN: 16157591     EISSN: 16157605     Source Type: Journal    
DOI: 10.1007/s00449-016-1563-3     Document Type: Article

References (55)

1. Kumar S, Mishra IM, Adhikari DK (2008) Bioethanol production from baggasse with cell recycle at high temperature. J Biotechnol 136:S459
2. Behera S, Arora R, Nandhagopal N, Kumar S (2014) Importance of chemical pretreatment for bioconversion of lignocellulosic biomass. Renew Sust Energy Rev 36:91–106
3. Long TM, Su YK, Headman J, Higbee A, Willis LB, Jeffries TW (2012) Cofermentation of glucose, xylose, and cellobiose by the beetle-associated yeast Spathaspora passalidarum. Appl Env Microbiol 78:5492–5500
4. Kumar S, Singh SP, Mishra IM, Adhikari DK (2009) Recent advances in production of bioethanol from lignocellulosic biomass. Chem Eng Technol 32:517–526
5. Kumar S, Singh SP, Mishra IM, Adhikari DK (2009) Ethanol and xylitol production from glucose and xylose at high temperature by Kluyveromyce sp. IIPE453. J Ind Microbiol Biotechnol 36:1483–1489
6. Kumar S, Singh SP, Mishra IM, Adhikari DK (2010) Feasibility of ethanol production with enhanced sugar concentration in bagasse hydrolysate at high temperature using Kluyveromyces sp. IIPE453. Biofuels 1:697–704
7. Arora R, Behera S, Sharma NK, Singh R, Yadav YK, Kumar S (2014) Biochemical conversion of rice straw (Oryza sativa L.) to bioethanol using thermotolerant isolate K. marxianus NIRE-K3. In: Sharma NR, Thakur RC, Sharma M, Parihar L, Kumar G (eds) Proceeding of exploring and basic science for next generation frontiers. Elsevier, New Delhi, pp 143–146
8. Behera S, Arora R, Sharma NK, Kumar S (2014) Fermentation of glucose and xylose sugar for the production of ethanol and xylitol by the newly isolated NIRE-GX1 yeast. In: Kumar S, Sarma AK, Tyagi SK, Yadav YK (eds) Recent advances in bio-energy research, vol 3. SSS-NIRE, Kapurthala, pp 175–182
9. Kumar S, Dheeran P, Singh SP, Mishra IM, Adhikari DK (2015) Bioprocessing of bagasse hydrolysate for ethanol and xylitol production using thermotolerant yeast. Bioprocess Biosyst Eng 38:39–47
10. Hahn-Hägerdal B, Karhuma K, Jeppsson M, Gorwa-Grauslund MF (2007) Metabolic engineering for pentose utilization in Saccharomyces cerevisiae. Adv Biochem Eng Biotechnol 108:147–177
11. Runquist D, Hahn-Hägerdal B, Rådström P (2010) Comparison of heterologous xylose transporters in recombinant Saccharomyces cerevisiae. Biotechnol Biofuels 3:5
12. Sharma NK, Behera S, Arora R, Kumar S (2014) Genetic modification in yeast for simultaneous utilization of glucose and xylose. In: Kumar S, Sarma AK, Tyagi SK, Yadav YK (eds) Recent advances in bioenergy research, vol III. SSS-NIRE, Kapurthala, pp 194–207
13. Jeffries TW (1983) Utilization of xylose by bacteria, yeasts and fungi. Adv Biochem Eng Biotech 27:1–31
14. Wyman CE (1996) Handbook on bioethanol: production and utilization. Taylor Francis, Washington
15. Maleszka R, Schneider H (1982) Fermentation of d-xylose, xylitol and d-xylulose by yeasts. Can J Microbiol 28:360–363
16. Kotter P, Ciriacy M (1993) Xylose fermentation by Sacchaaromyces cerevisiae. Appl Microbiol Biotechnol 38:776–783
17. Katahira S, Mizuike A, Fukuda H, Kondo A (2006) Ethanol fermentation from lignocellulosic hydrolysate by a recombinant xylose- and cello-oligosaccharides assimilating yeast strain. Appl Microbiol Biotechnol 72:1136–1143
18. Kuhad RC, Gupta R, Khasa YP, Singh A, Zhang YHP (2011) Bioethanol production from pentose sugars: current status and future prospects. Ren Sus Energy Rev 15:4950–4962
19. Sedlak M, Ho NW (2004) Characterization of the effectiveness of hexose transporters for transporting xylose during glucose and xylose co-fermentation by a recombinant Saccharomyces yeast. Yeast 21:671–684
20. Young E, Poucher A, Comer A, Bailey A, Alper H (2011) Functional survey for heterologous sugar transport proteins, using Saccharomyces cerevisiae as a host. Appl Environ Microbiol 77:3311–3319
21. Farwick A, Bruder S, Schadeweg V, Oreb M, Boles E (2014) Engineering of yeast hexose transporters to transport d-xylose without inhibition by d-glucose. Proc Natl Acad Sci USA 111:5159–5164
22. Yablochkova EN, Bolotnikova OI, Mikhaĭlova NP, Nemova NN, Ginak AI (2003) The activity of xylose reductase and xylitol dehydrogenase in yeasts. Microbiol 72:414–417
23. Yablochkova EN, Bolotnikova OI, Mikhaĭlova NP, Nemova NN, Ginak AI (2004) Activity of the key enzymes in xylose assimilating yeasts at different rates of oxygen transfer to the fermentation medium. Microbiol 73:129–133
24. Arora R, Behera S, Kumar S (2015) Bioprospecting thermophilic/thermotolerant microbes for production of lignocellulosic ethanol: a future perspective. Renew Sust Energy Rev 51:699–717
25. Rodrussamee N, Lertwattanasakul N, Hirata K, Suprayogi Limtong S, Kosaka T, Yamada M (2011) Growth and ethanol fermentation ability on hexose and pentose sugars and glucose effect under various conditions in thermotolerant yeast Kluyveromyces marxianus. Appl Microbiol Biotechnol 90(1573):1586
26. Zhang B, Li L, Zhang J, Gao X, Wang D, Hong J (2013) Improving ethanol and xylitol fermentation at elevated temperature through substitution of xylose reductase in Kluyveromyces marxianus. J Ind Microbiol Biotechnol 40:305–316
27. Signori L, Passolunghi S, Ruohonen L, Porro D, Branduardi P (2014) Effect of oxygenation and temperature on glucosexylose fermentation in Kluyveromyces marxianus CBS712 strain. Microb Cell Fact 13:51
28. Kuyper M, Toirkens MJ, Diderich JA, Winkler AA, van Dijken JP, Pronk JT (2005) Evolutionary engineering of mixed-sugar utilization by a xylose-fermenting Saccharomyces cerevisiae strain. FEMS Yeast Res 5:925–934
29. Zhou H, Cheng JS, Wang BL, Fink GR, Stephanopoulos G (2012) Xylose isomerase overexpression along with engineering of the pentose phosphate pathway and evolutionary engineering enable rapid xylose utilization and ethanol production by Saccharomyces cerevisiae. Metab Eng 14:611–622
30. Kuyper M, Winkler AA, van Dijken JP, Pronk JT (2004) Minimal metabolic engineering of Saccharomyces cerevisiae for efficient anaerobic xylose fermentation: a proof of principle. FEMS Yeast Res 4:655–664
31. Liu E, Hu Y (2010) Construction of a xylose-fermenting Saccharomyces cerevisiae strain by combined approaches of genetic engineering, chemical mutagenesis and evolutionary adaptation. Biochem Eng J 48:204–210
32. Cadiere A, Ortiz-Julien A, Camarasa C, Dequin S (2011) Evolutionary engineered Saccharomyces cerevisiae wine yeast strains with increased in vivo flux through the pentose phosphate pathway. Metab Eng 13:263–271
33. Koppram R, Albers E, Olsson L (2012) Evolutionary engineering strategies to enhance tolerance of xylose utilizing recombinant yeast to inhibitors derived from spruce biomass. Biotechnol Biofuels 5:32
34. Shen Y, Chen X, Peng B, Chen L, Hou J, Bao X (2012) An efficient xylose-fermenting recombinant Saccharomyces cerevisiae strain obtained through adaptive evolution and its global transcription profile. Appl Microbiol Biotechnol 96:1079–1091
35. Lee SM, Jellison T, Alper HS (2014) Systematic and evolutionary engineering of a xylose isomerase-based pathway in Saccharomyces cerevisiae for efficient conversion yields. Biotechnol Biofuels 7:122
36. Liu ZL, Slininger PJ, Dien BS, Berhow MA, Kurtzman CP, Gorsich SW (2004) Adaptive response of yeasts to furfural and 5-hydroxymethylfurfural and new chemical evidence for HMF conversion to 2, 5-bis-hydroxymethylfuran. J Ind Microbiol Biotechnol 31:345–352
37. Agbogbo FK, Haagensen FD, Milam D, Wenger KS (2008) Fermentation of acid pretreated corn stover to ethanol without detoxification using Pichia stipitis. Appl Biochem Biotechnol 145:53–58
38. Zhu JJ, Yong Q, Xu Y, Chen S-X, Yu SY (2009) Adaptation fermentation of Pichia stipitis and combination detoxification on steam exploded lignocellulosic prehydrolyzate. Nat Sci 1:47–54
39. Wisselink HW, Toirkens MJ, Wu Q, Pronk JT, van Maris AJ (2009) A novel evolutionary engineering approach for accelerated utilization of glucose, xylose and arabinose mixtures by engineered Saccharomyces cerevisiae. Appl Environ Microbiol 75:907–914
40. Diao L, Liu Y, Qian F, Yang J, Jiang Y, Yang S (2013) Construction of fast xylose-fermenting yeast based on industrial ethanol-producing diploid Saccharomyces cerevisiae by rational design and adaptive evolution. BMC Biotechnol 13:110
41. Arora R, Behera S, Sharma NK, Kumar S (2015) A new search for thermotolerant yeast, its characterization and optimization using response surface methodology for ethanol production. Front Microbiol 6:1–16
42. Bailey JE, Ollis DF (1986) Biochemical engineering fundamentals. McGraw-Hill, New York
43. Sonderegger M, Sauer U (2003) Evolutionary engineering of Saccharomyces cerevisiae for anaerobic growth on xylose. Appl Environ Microbiol 69:1990–1998
44. Beales N (2004) Adaptation of microorganisms to cold temperatures, weak acid preservatives, low pH and osmotic stress: a review. Compr Rev Food Sci Food Saf 3:1–20
45. Brejning J, Arneborg N, Jaspersen L (2005) Identification of genes and proteins induced during lag and early exponential phase of lager brewing yeasts. J Appl Microbiol 98:261–271
46. Vriesekoop F, Pamment NB (2005) Acetaldehyde addition and pre-adaptation to the stressor together virtually eliminated the ethanol-induced lag phase in Saccharomyces cerevisiae. Lett Appl Microbiol 41:424–427
47. Mihoub F, Mistou MY, Guillot A, Leveau JY, Boubetra A, Billaux F (2003) Cold adaptation of Escherichia coli: microbiological and proteomic approaches. Int J Food Microbiol 89:171–184
48. Landaeta R, Aroca G, Acevedo F, Teixeira JA, Mussatto SI (2013) Adaptation of a flocculent Saccharomyces cerevisiae strain to lignocellulosic inhibitors by cell recycle batch fermentation. Appl Energy 102:124–130
49. Slininger PJ, Shea-Andersh MA, Thompson SR, Dien BS, Kurtzman CP, Balan V, da Costa Sousa L, Uppugundla N, Dale BE, Cotta MA (2015) Evolved strains of Scheffersomyces stipitis achieving high ethanol productivity on acid- and base-pretreated biomass hydrolyzate at high solids loading. Biotechnol Biofuels 8:60
50. Nigam JN (2001) Development of xylose-fermenting yeast Pichia stipitis for ethanol production through adaptation on hardwood hemicellulose acid prehydrolysate. J Appl Microbiol 90:208–215
51. Martin C, Marcet M, Almazan O, Jonsson LJ (2007) Adaptation of a recombinant xylose-utilizing Saccharomyces cerevisiae strain to a sugarcane bagasse hydrolysate with high content of fermentation inhibitors. Biores Techn 98:1767–1773
52. Pereira SR, Sanchez I, Nogue V, Frazao CJ, Serafim LS, Gorwa-Grauslund MF, Xavier AM (2015) Adaptation of Scheffersomyces stipitis to hardwood spent sulfite liquor by evolutionary engineering. Biotechnol Biofuels 8:50
53. Silva CJ, Roberto IC (2001) Improvement of xylitol production by Candida guilliermondii FTI 20037 previously adapted to rice straw hemicellulosic hydrolysate. Lett Appl Microbiol 32:248–252
54. Matsushika A, Oguri E, Sawayama S (2010) Evolutionary adaptation of recombinant shochu yeast for improved xylose utilization. J Biosci Bioeng 110:102–105
55. Wahlbom CF, van Zyl WH, Jönsson LJ, Hahn-Hägerdal B, Otero RR (2003) Generation of the improved recombinant xylose-utilizing Saccharomyces cerevisiae TMB 3400 by random mutagenesis and physiological comparison with Pichia stipitis CBS 6054. FEMS Yeast Res 3:319–326