메뉴 건너뛰기




Volumn 6, Issue , 2015, Pages

Transcriptional elongation requires DNA break-induced signalling

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING); DOUBLE STRANDED DNA; HISTONE H2AX; PROTEIN; RNA POLYMERASE II; TRIM28 PROTEIN; UNCLASSIFIED DRUG; DNA DEPENDENT PROTEIN KINASE; HISTONE; NUCLEAR PROTEIN; POSITIVE TRANSCRIPTION ELONGATION FACTOR B; PRKDC PROTEIN, HUMAN; REPRESSOR PROTEIN; TRIM28 PROTEIN, HUMAN;

EID: 84950285123     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms10191     Document Type: Article
Times cited : (160)

References (59)
  • 1
    • 77951920690 scopus 로고    scopus 로고
    • C-Myc regulates transcriptional pause release
    • Rahl, P. B. et al. c-Myc regulates transcriptional pause release. Cell 141, 432-445 (2010).
    • (2010) Cell , vol.141 , pp. 432-445
    • Rahl, P.B.1
  • 2
    • 74549132843 scopus 로고    scopus 로고
    • Global analysis of short RNAs reveals widespread promoterproximal stalling and arrest of Pol II in Drosophila
    • Nechaev, S. et al. Global analysis of short RNAs reveals widespread promoterproximal stalling and arrest of Pol II in Drosophila. Science 327, 335-338 (2010).
    • (2010) Science , vol.327 , pp. 335-338
    • Nechaev, S.1
  • 3
    • 36549061004 scopus 로고    scopus 로고
    • RNA polymerase is poised for activation across the genome
    • Muse, G. W. et al. RNA polymerase is poised for activation across the genome. Nat. Genet. 39, 1507-1511 (2007).
    • (2007) Nat. Genet. , vol.39 , pp. 1507-1511
    • Muse, G.W.1
  • 4
    • 57849109058 scopus 로고    scopus 로고
    • Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
    • Core, L. J., Waterfall, J. J. & Lis, J. T. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322, 1845-1848 (2008).
    • (2008) Science , vol.322 , pp. 1845-1848
    • Core, L.J.1    Waterfall, J.J.2    Lis, J.T.3
  • 5
    • 33847189172 scopus 로고    scopus 로고
    • Whole-genome ChIP-chip analysis of Dorsal Twist and Snail suggests integration of diverse patterning processes in the Drosophila embryo
    • Zeitlinger, J. et al. Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo. Genes Dev. 21, 385-390 (2007).
    • (2007) Genes Dev. , vol.21 , pp. 385-390
    • Zeitlinger, J.1
  • 6
    • 57849140661 scopus 로고    scopus 로고
    • Divergent transcription from active promoters
    • Seila, A. C. et al. Divergent transcription from active promoters. Science 322, 1849-1851 (2008).
    • (2008) Science , vol.322 , pp. 1849-1851
    • Seila, A.C.1
  • 7
    • 84871699564 scopus 로고    scopus 로고
    • Promoter-proximal pausing of RNA polymerase II: Emerging roles in metazoans
    • Adelman, K. & Lis, J. T. Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans. Nat. Rev. Genet. 13, 720-731 (2012).
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 720-731
    • Adelman, K.1    Lis, J.T.2
  • 8
    • 36549013619 scopus 로고    scopus 로고
    • RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
    • Zeitlinger, J. et al. RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo. Nat. Genet. 39, 1512-1516 (2007).
    • (2007) Nat. Genet. , vol.39 , pp. 1512-1516
    • Zeitlinger, J.1
  • 9
    • 48949118753 scopus 로고    scopus 로고
    • RNA polymerase II stalling: Loading at the start prepares genes for a sprint
    • Wu, J. Q. & Snyder, M. RNA polymerase II stalling: loading at the start prepares genes for a sprint. Genome Biol. 9, 220 (2008).
    • (2008) Genome Biol. , vol.9 , pp. 220
    • Wu, J.Q.1    Snyder, M.2
  • 10
    • 0037609009 scopus 로고    scopus 로고
    • NELF and DSIF cause promoter proximal pausing on the hsp70 promoter in Drosophila
    • Wu, C. H. et al. NELF and DSIF cause promoter proximal pausing on the hsp70 promoter in Drosophila. Genes Dev. 17, 1402-1414 (2003).
    • (2003) Genes Dev. , vol.17 , pp. 1402-1414
    • Wu, C.H.1
  • 11
    • 33746403681 scopus 로고    scopus 로고
    • Controlling the elongation phase of transcription with P-TEFb
    • Peterlin, B. M. & Price, D. H. Controlling the elongation phase of transcription with P-TEFb. Mol. Cell 23, 297-305 (2006).
    • (2006) Mol. Cell , vol.23 , pp. 297-305
    • Peterlin, B.M.1    Price, D.H.2
  • 12
    • 84922281026 scopus 로고    scopus 로고
    • TRIM28 regulates RNA polymerase II promoter-proximal pausing and pause release
    • Bunch, H. et al. TRIM28 regulates RNA polymerase II promoter-proximal pausing and pause release. Nat. Struct. Mol. Biol. 21, 876-883 (2014).
    • (2014) Nat. Struct. Mol. Biol. , vol.21 , pp. 876-883
    • Bunch, H.1
  • 13
    • 84939483126 scopus 로고    scopus 로고
    • TRIM28 as a novel transcriptional elongation factor
    • Bunch, H. & Calderwood, S. K. TRIM28 as a novel transcriptional elongation factor. BMC Mol. Biol. 16, 14 (2015).
    • (2015) BMC Mol. Biol. , vol.16 , pp. 14
    • Bunch, H.1    Calderwood, S.K.2
  • 14
    • 67349288164 scopus 로고    scopus 로고
    • Distinct roles of ATR and DNA-PKcs in triggering DNA damage responses in ATM-deficient cells
    • Tomimatsu, N., Mukherjee, B. & Burma, S. Distinct roles of ATR and DNA-PKcs in triggering DNA damage responses in ATM-deficient cells. EMBO. Rep. 10, 629-635 (2009).
    • (2009) EMBO. Rep. , vol.10 , pp. 629-635
    • Tomimatsu, N.1    Mukherjee, B.2    Burma, S.3
  • 15
    • 84884630330 scopus 로고    scopus 로고
    • ATM release at resected double-strand breaks provides heterochromatin reconstitution to facilitate homologous recombination
    • Geuting, V., Reul, C. & Lobrich, M. ATM release at resected double-strand breaks provides heterochromatin reconstitution to facilitate homologous recombination. PLoS Genet. 9, e1003667 (2013).
    • (2013) PLoS Genet. , vol.9 , pp. e1003667
    • Geuting, V.1    Reul, C.2    Lobrich, M.3
  • 16
    • 64649105115 scopus 로고    scopus 로고
    • DNA topoisomerase II and its growing repertoire of biological functions
    • Nitiss, J. L. DNA topoisomerase II and its growing repertoire of biological functions. Nat. Rev. Cancer 9, 327-337 (2009).
    • (2009) Nat. Rev. Cancer , vol.9 , pp. 327-337
    • Nitiss, J.L.1
  • 17
    • 84879682825 scopus 로고    scopus 로고
    • Transcription under torsion
    • Ma, J., Bai, L. & Wang, M. D. Transcription under torsion. Science 340, 1580-1583 (2013).
    • (2013) Science , vol.340 , pp. 1580-1583
    • Ma, J.1    Bai, L.2    Wang, M.D.3
  • 18
    • 84857191660 scopus 로고    scopus 로고
    • Transcription as a source of genome instability
    • Kim, N. & Jinks-Robertson, S. Transcription as a source of genome instability. Nat. Rev. Genet. 13, 204-214 (2012).
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 204-214
    • Kim, N.1    Jinks-Robertson, S.2
  • 19
    • 84870524315 scopus 로고    scopus 로고
    • Topoisomerase II is required for the production of long Pol II gene transcripts in yeast
    • Joshi, R. S., Pina, B. & Roca, J. Topoisomerase II is required for the production of long Pol II gene transcripts in yeast. Nucleic Acids Res. 40, 7907-7915 (2012).
    • (2012) Nucleic Acids Res. , vol.40 , pp. 7907-7915
    • Joshi, R.S.1    Pina, B.2    Roca, J.3
  • 20
    • 84872011816 scopus 로고    scopus 로고
    • DNA Topoisomerases maintain promoters in a state competent for transcriptional activation in Saccharomyces cerevisiae
    • Pedersen, J. M. et al. DNA Topoisomerases maintain promoters in a state competent for transcriptional activation in Saccharomyces cerevisiae. PLoS Genet. 8, e1003128 (2012).
    • (2012) PLoS Genet. , vol.8 , pp. e1003128
    • Pedersen, J.M.1
  • 21
    • 0029065571 scopus 로고
    • Association of increased spontaneous mutation rates with high levels of transcription in yeast
    • Datta, A. & Jinks-Robertson, S. Association of increased spontaneous mutation rates with high levels of transcription in yeast. Science 268, 1616-1619 (1995).
    • (1995) Science , vol.268 , pp. 1616-1619
    • Datta, A.1    Jinks-Robertson, S.2
  • 22
    • 84873390533 scopus 로고    scopus 로고
    • Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability
    • Drier, Y. et al. Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability. Genome Res. 23, 228-235 (2013).
    • (2013) Genome Res. , vol.23 , pp. 228-235
    • Drier, Y.1
  • 23
    • 84255198334 scopus 로고    scopus 로고
    • Collisions between replication and transcription complexes cause common fragile site instability at the longest human genes
    • Helmrich, A., Ballarino, M. & Tora, L. Collisions between replication and transcription complexes cause common fragile site instability at the longest human genes. Mol. Cell 44, 966-977 (2011).
    • (2011) Mol. Cell , vol.44 , pp. 966-977
    • Helmrich, A.1    Ballarino, M.2    Tora, L.3
  • 24
    • 79952283912 scopus 로고    scopus 로고
    • Estrogen receptor alpha-mediated transcription induces cell cycle-dependent DNA double-strand breaks
    • Williamson, L. M. & Lees-Miller, S. P. Estrogen receptor alpha-mediated transcription induces cell cycle-dependent DNA double-strand breaks. Carcinogenesis 32, 279-285 (2011).
    • (2011) Carcinogenesis , vol.32 , pp. 279-285
    • Williamson, L.M.1    Lees-Miller, S.P.2
  • 25
    • 33745255099 scopus 로고    scopus 로고
    • A topoisomerase IIbeta-mediated dsDNA break required for regulated transcription
    • Ju, B. G. et al. A topoisomerase IIbeta-mediated dsDNA break required for regulated transcription. Science 312, 1798-1802 (2006).
    • (2006) Science , vol.312 , pp. 1798-1802
    • Ju, B.G.1
  • 26
    • 77955069195 scopus 로고    scopus 로고
    • Androgen-induced TOP2B-mediated double-strand breaks and prostate cancer gene rearrangements
    • Haffner, M. C. et al. Androgen-induced TOP2B-mediated double-strand breaks and prostate cancer gene rearrangements. Nat. Genet. 42, 668-675 (2010).
    • (2010) Nat. Genet. , vol.42 , pp. 668-675
    • Haffner, M.C.1
  • 27
    • 84887151305 scopus 로고    scopus 로고
    • The intertwined roles of transcription and repair proteins
    • Fong, Y. W., Cattoglio, C. & Tjian, R. The intertwined roles of transcription and repair proteins. Mol. Cell 52, 291-302 (2013).
    • (2013) Mol. Cell , vol.52 , pp. 291-302
    • Fong, Y.W.1    Cattoglio, C.2    Tjian, R.3
  • 28
    • 77951201429 scopus 로고    scopus 로고
    • DNA-PKcs plays a dominant role in the regulation of H2AX phosphorylation in response to DNA damage and cell cycle progression
    • An, J. et al. DNA-PKcs plays a dominant role in the regulation of H2AX phosphorylation in response to DNA damage and cell cycle progression. BMC Mol. Biol. 11, 18 (2010).
    • (2010) BMC Mol. Biol. , vol.11 , pp. 18
    • An, J.1
  • 29
    • 57149136324 scopus 로고    scopus 로고
    • GammaH2AX and cancer
    • Bonner, W. M. et al. GammaH2AX and cancer. Nat. Rev. Cancer 8, 957-967 (2008).
    • (2008) Nat. Rev. Cancer , vol.8 , pp. 957-967
    • Bonner, W.M.1
  • 30
    • 78649336706 scopus 로고    scopus 로고
    • The DNA damage response: Making it safe to play with knives
    • Ciccia, A. & Elledge, S. J. The DNA damage response: making it safe to play with knives. Mol. Cell 40, 179-204 (2010).
    • (2010) Mol. Cell , vol.40 , pp. 179-204
    • Ciccia, A.1    Elledge, S.J.2
  • 31
    • 78650250161 scopus 로고    scopus 로고
    • Recruitment timing and dynamics of transcription factors at the Hsp70 loci in living cells
    • Zobeck, K. L., Buckley, M. S., Zipfel, W. R. & Lis, J. T. Recruitment timing and dynamics of transcription factors at the Hsp70 loci in living cells. Mol. Cell 40, 965-975 (2010).
    • (2010) Mol. Cell , vol.40 , pp. 965-975
    • Zobeck, K.L.1    Buckley, M.S.2    Zipfel, W.R.3    Lis, J.T.4
  • 32
    • 34247507469 scopus 로고    scopus 로고
    • Ataxia telangiectasia mutated (ATM) is essential for DNA-PKcs phosphorylations at the Thr-2609 cluster upon DNA double strand break
    • Chen, B. P. et al. Ataxia telangiectasia mutated (ATM) is essential for DNA-PKcs phosphorylations at the Thr-2609 cluster upon DNA double strand break. J. Biol. Chem. 282, 6582-6587 (2007).
    • (2007) J. Biol. Chem. , vol.282 , pp. 6582-6587
    • Chen, B.P.1
  • 33
    • 84903795949 scopus 로고    scopus 로고
    • A double-edged sword: R loops as threats to genome integrity and powerful regulators of gene expression
    • Skourti-Stathaki, K. & Proudfoot, N. J. A double-edged sword: R loops as threats to genome integrity and powerful regulators of gene expression. Genes Dev. 28, 1384-1396 (2014).
    • (2014) Genes Dev. , vol.28 , pp. 1384-1396
    • Skourti-Stathaki, K.1    Proudfoot, N.J.2
  • 34
    • 0035920154 scopus 로고    scopus 로고
    • Activating transcription factor 3 induces DNA synthesis and expression of cyclin D1 in hepatocytes
    • Allan, A. L., Albanese, C., Pestell, R. G. & LaMarre, J. Activating transcription factor 3 induces DNA synthesis and expression of cyclin D1 in hepatocytes. J. Biol. Chem. 276, 27272-27280 (2001).
    • (2001) J. Biol. Chem. , vol.276 , pp. 27272-27280
    • Allan, A.L.1    Albanese, C.2    Pestell, R.G.3    LaMarre, J.4
  • 35
    • 34447532525 scopus 로고    scopus 로고
    • Heterochromatin is refractory to gamma-H2AX modification in yeast and mammals
    • Kim, J. A., Kruhlak, M., Dotiwala, F., Nussenzweig, A. & Haber, J. E. Heterochromatin is refractory to gamma-H2AX modification in yeast and mammals. J. Cell Biol. 178, 209-218 (2007).
    • (2007) J. Cell Biol. , vol.178 , pp. 209-218
    • Kim, J.A.1    Kruhlak, M.2    Dotiwala, F.3    Nussenzweig, A.4    Haber, J.E.5
  • 36
    • 0032489520 scopus 로고    scopus 로고
    • DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139
    • Rogakou, E. P., Pilch, D. R., Orr, A. H., Ivanova, V. S. & Bonner, W. M. DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139. J. Biol. Chem. 273, 5858-5868 (1998).
    • (1998) J. Biol. Chem. , vol.273 , pp. 5858-5868
    • Rogakou, E.P.1    Pilch, D.R.2    Orr, A.H.3    Ivanova, V.S.4    Bonner, W.M.5
  • 37
    • 77951498531 scopus 로고    scopus 로고
    • High-resolution profiling of gammaH2AX around DNA double strand breaks in the mammalian genome
    • Iacovoni, J. S. et al. High-resolution profiling of gammaH2AX around DNA double strand breaks in the mammalian genome. EMBO J. 29, 1446-1457 (2010).
    • (2010) EMBO J. , vol.29 , pp. 1446-1457
    • Iacovoni, J.S.1
  • 38
    • 84931577486 scopus 로고    scopus 로고
    • Activity-induced DNA breaks govern the expression of neuronal early-response genes
    • Madabhushi, R. et al. Activity-induced DNA breaks govern the expression of neuronal early-response genes. Cell 161, 1592-1605 (2015).
    • (2015) Cell , vol.161 , pp. 1592-1605
    • Madabhushi, R.1
  • 39
    • 0028855064 scopus 로고
    • DNA-dependent protein kinase: A potent inhibitor of transcription by RNA polymerase i
    • Kuhn, A., Gottlieb, T. M., Jackson, S. P. & Grummt, I. DNA-dependent protein kinase: a potent inhibitor of transcription by RNA polymerase I. Genes Dev. 9, 193-203 (1995).
    • (1995) Genes Dev. , vol.9 , pp. 193-203
    • Kuhn, A.1    Gottlieb, T.M.2    Jackson, S.P.3    Grummt, I.4
  • 40
    • 84860504575 scopus 로고    scopus 로고
    • Regulating the regulators: The pervasive effects of Pol II pausing on stimulus-responsive gene networks
    • Gilchrist, D. A. et al. Regulating the regulators: the pervasive effects of Pol II pausing on stimulus-responsive gene networks. Genes Dev. 26, 933-944 (2012).
    • (2012) Genes Dev. , vol.26 , pp. 933-944
    • Gilchrist, D.A.1
  • 41
    • 33745481445 scopus 로고    scopus 로고
    • Transcription Gene expression needs a break to unwind before carrying on
    • Haince, J. F., Rouleau, M. & Poirier, G. G. Transcription. Gene expression needs a break to unwind before carrying on. Science 312, 1752-1753 (2006).
    • (2006) Science , vol.312 , pp. 1752-1753
    • Haince, J.F.1    Rouleau, M.2    Poirier, G.G.3
  • 42
    • 0029926662 scopus 로고    scopus 로고
    • Selective inhibition of topoisomerase II by ICRF-193 does not support a role for topoisomerase II activity in the fragmentation of chromatin during apoptosis of human leukemia cells
    • Beere, H. M., Chresta, C. M. & Hickman, J. A. Selective inhibition of topoisomerase II by ICRF-193 does not support a role for topoisomerase II activity in the fragmentation of chromatin during apoptosis of human leukemia cells. Mol. Pharmacol. 49, 842-851 (1996).
    • (1996) Mol. Pharmacol. , vol.49 , pp. 842-851
    • Beere, H.M.1    Chresta, C.M.2    Hickman, J.A.3
  • 43
    • 34248158282 scopus 로고    scopus 로고
    • Hyperthermia activates a subset of ataxia-telangiectasia mutated effectors independent of DNA strand breaks and heat shock protein 70 status
    • Hunt, C. R. et al. Hyperthermia activates a subset of ataxia-telangiectasia mutated effectors independent of DNA strand breaks and heat shock protein 70 status. Cancer Res. 67, 3010-3017 (2007).
    • (2007) Cancer Res. , vol.67 , pp. 3010-3017
    • Hunt, C.R.1
  • 44
    • 0030771917 scopus 로고    scopus 로고
    • Heat shock transcription factor 1 binds selectively in vitro to Ku protein and the catalytic subunit of the DNA-dependent protein kinase
    • Huang, J., Nueda, A., Yoo, S. & Dynan, W. S. Heat shock transcription factor 1 binds selectively in vitro to Ku protein and the catalytic subunit of the DNA-dependent protein kinase. J. Biol. Chem. 272, 26009-26016 (1997).
    • (1997) J. Biol. Chem. , vol.272 , pp. 26009-26016
    • Huang, J.1    Nueda, A.2    Yoo, S.3    Dynan, W.S.4
  • 45
    • 77954922964 scopus 로고    scopus 로고
    • Activator-Mediator binding regulates Mediatorcofactor interactions
    • Ebmeier, C. C. & Taatjes, D. J. Activator-Mediator binding regulates Mediatorcofactor interactions. Proc. Natl Acad. Sci. USA 107, 11283-11288 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 11283-11288
    • Ebmeier, C.C.1    Taatjes, D.J.2
  • 46
    • 84865377934 scopus 로고    scopus 로고
    • XPG and XPF endonucleases trigger chromatin looping and DNA demethylation for accurate expression of activated genes
    • Le May, N., Fradin, D., Iltis, I., Bougneres, P. & Egly, J. M. XPG and XPF endonucleases trigger chromatin looping and DNA demethylation for accurate expression of activated genes. Mol. Cell 47, 622-632 (2012).
    • (2012) Mol. Cell , vol.47 , pp. 622-632
    • Le May, N.1    Fradin, D.2    Iltis, I.3    Bougneres, P.4    Egly, J.M.5
  • 47
    • 79951500316 scopus 로고    scopus 로고
    • Okazaki fragment maturation: Nucleases take centre stage
    • Zheng, L. & Shen, B. Okazaki fragment maturation: nucleases take centre stage. J. Mol. Cell Biol. 3, 23-30 (2011).
    • (2011) J. Mol. Cell Biol. , vol.3 , pp. 23-30
    • Zheng, L.1    Shen, B.2
  • 48
    • 0025939524 scopus 로고
    • Positive DNA supercoiling generates a chromatin conformation characteristic of highly active genes
    • Lee, M. S. & Garrard, W. T. Positive DNA supercoiling generates a chromatin conformation characteristic of highly active genes. Proc. Natl Acad. Sci. USA 88, 9675-9679 (1991).
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 9675-9679
    • Lee, M.S.1    Garrard, W.T.2
  • 49
    • 84859087611 scopus 로고    scopus 로고
    • R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters
    • Ginno, P. A., Lott, P. L., Christensen, H. C., Korf, I. & Chedin, F. R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters. Mol. Cell 45, 814-825 (2012).
    • (2012) Mol. Cell , vol.45 , pp. 814-825
    • Ginno, P.A.1    Lott, P.L.2    Christensen, H.C.3    Korf, I.4    Chedin, F.5
  • 50
    • 84918791689 scopus 로고    scopus 로고
    • Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability
    • Sollier, J. et al. Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability. Mol. Cell 56, 777-785 (2014).
    • (2014) Mol. Cell , vol.56 , pp. 777-785
    • Sollier, J.1
  • 51
    • 84922147486 scopus 로고    scopus 로고
    • Ligand-dependent enhancer activation regulated by topoisomerase-I activity
    • Puc, J. et al. Ligand-dependent enhancer activation regulated by topoisomerase-I activity. Cell 160, 367-380 (2015).
    • (2015) Cell , vol.160 , pp. 367-380
    • Puc, J.1
  • 52
    • 79961225321 scopus 로고    scopus 로고
    • Topoisomerase II binds nucleosome-free DNA and acts redundantly with topoisomerase i to enhance recruitment of RNA Pol II in budding yeast
    • Sperling, A. S., Jeong, K. S., Kitada, T. & Grunstein, M. Topoisomerase II binds nucleosome-free DNA and acts redundantly with topoisomerase I to enhance recruitment of RNA Pol II in budding yeast. Proc. Natl Acad. Sci. USA 108, 12693-12698 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 12693-12698
    • Sperling, A.S.1    Jeong, K.S.2    Kitada, T.3    Grunstein, M.4
  • 53
    • 79957686784 scopus 로고    scopus 로고
    • Unrepaired clustered DNA lesions induce chromosome breakage in human cells
    • Asaithamby, A., Hu, B. & Chen, D. J. Unrepaired clustered DNA lesions induce chromosome breakage in human cells. Proc. Natl Acad. Sci. USA 108, 8293-8298 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 8293-8298
    • Asaithamby, A.1    Hu, B.2    Chen, D.J.3
  • 54
    • 17644384427 scopus 로고    scopus 로고
    • Cell cycle dependence of DNA-dependent protein kinase phosphorylation in response to DNA double strand breaks
    • Chen, B. P. et al. Cell cycle dependence of DNA-dependent protein kinase phosphorylation in response to DNA double strand breaks. J. Biol. Chem. 280, 14709-14715 (2005).
    • (2005) J. Biol. Chem. , vol.280 , pp. 14709-14715
    • Chen, B.P.1
  • 55
    • 84912097040 scopus 로고    scopus 로고
    • Nonenzymatic role for WRN in preserving nascent DNA strands after replication stress
    • Su, F. et al. Nonenzymatic role for WRN in preserving nascent DNA strands after replication stress. Cell Rep. 9, 1387-1401 (2014).
    • (2014) Cell Rep. , vol.9 , pp. 1387-1401
    • Su, F.1
  • 56
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 57
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 58
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz, S. et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589 (2010).
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1
  • 59
    • 84928987900 scopus 로고    scopus 로고
    • HTSeq-A Python framework to work with high-throughput sequencing data
    • Anders, S., Pyl, P. T. & Huber, W. HTSeq-a Python framework to work with high-throughput sequencing data. Bioinformatics 31, 166-169 (2014).
    • (2014) Bioinformatics , vol.31 , pp. 166-169
    • Anders, S.1    Pyl, P.T.2    Huber, W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.