-
1
-
-
11344268432
-
Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFIIS
-
Adelman K, Marr MT, Werner J, Saunders A, Ni Z, Andrulis ED, Lis T. 2005. Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFIIS. Mol Cell 17: 103-112.
-
(2005)
Mol Cell
, vol.17
, pp. 103-112
-
-
Adelman, K.1
Marr, M.T.2
Werner, J.3
Saunders, A.4
Ni, Z.5
Andrulis, E.D.6
Lis, T.7
-
2
-
-
70849107088
-
Immediate mediators of the inflammatory response are poised for gene activation through RNA polymerase II stalling
-
Adelman K, Kennedy MA, Nechaev S, Gilchrist DA, Muse GW, Chinenov Y, Rogatsky I. 2009. Immediate mediators of the inflammatory response are poised for gene activation through RNA polymerase II stalling. Proc Natl Acad Sci 106: 18207-18212.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 18207-18212
-
-
Adelman, K.1
Kennedy, M.A.2
Nechaev, S.3
Gilchrist, D.A.4
Muse, G.W.5
Chinenov, Y.6
Rogatsky, I.7
-
3
-
-
64549154033
-
Mouse cofactor of BRCA1 (Cobra1) is required for early embryogenesis
-
doi: 10.1371/journal.pone.0005034
-
Amleh A, Nair SJ, Sun J, Sutherland A, Hasty P, Li R. 2009. Mouse cofactor of BRCA1 (Cobra1) is required for early embryogenesis. PLoS ONE 4: e5034. doi: 10.1371/journal.pone.0005034.
-
(2009)
PLoS ONE
, vol.4
-
-
Amleh, A.1
Nair, S.J.2
Sun, J.3
Sutherland, A.4
Hasty, P.5
Li, R.6
-
4
-
-
79955600698
-
The liberation of embryonic stem cells
-
doi: 10.1371/journal. pgen.1002019
-
Blair K, Wray J, Smith A. 2011. The liberation of embryonic stem cells. PLoS Genet 7: e1002019. doi: 10.1371/journal. pgen.1002019.
-
(2011)
PLoS Genet
, vol.7
-
-
Blair, K.1
Wray, J.2
Smith, A.3
-
5
-
-
67749106610
-
Synchronous and stochastic patterns of gene activation in the Drosophila embryo
-
Boettiger AN, Levine M. 2009. Synchronous and stochastic patterns of gene activation in the Drosophila embryo. Science 325: 471-473.
-
(2009)
Science
, vol.325
, pp. 471-473
-
-
Boettiger, A.N.1
Levine, M.2
-
6
-
-
0036848010
-
Sequential activation of signaling pathways during innate immune responses in Drosophila
-
Boutros M, Agaisse H, Perrimon N. 2002. Sequential activation of signaling pathways during innate immune responses in Drosophila. Dev Cell 3: 711-722.
-
(2002)
Dev Cell
, vol.3
, pp. 711-722
-
-
Boutros, M.1
Agaisse, H.2
Perrimon, N.3
-
7
-
-
34547563511
-
Properties of RNA polymerase II elongation complexes before and after the P-TEFb-mediated transition into productive elongation
-
Cheng B, Price DH. 2007. Properties of RNA polymerase II elongation complexes before and after the P-TEFb-mediated transition into productive elongation. J Biol Chem 282: 21901-21912.
-
(2007)
J Biol Chem
, vol.282
, pp. 21901-21912
-
-
Cheng, B.1
Price, D.H.2
-
8
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core LJ, Waterfall JJ, Lis JT. 2008. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322: 1845-1848.
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
9
-
-
67649858793
-
Two roles for the Drosophila IKK complex in the activation of Relish and the induction of antimicrobial peptide genes
-
Erturk-Hasdemir D, Broemer M, Leulier F, Lane WS, Paquette N, Hwang D, Kim CH, Stoven S, Meier P, Silverman N. 2009. Two roles for the Drosophila IKK complex in the activation of Relish and the induction of antimicrobial peptide genes. Proc Natl Acad Sci 106: 9779-9784.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 9779-9784
-
-
Erturk-Hasdemir, D.1
Broemer, M.2
Leulier, F.3
Lane, W.S.4
Paquette, N.5
Hwang, D.6
Kim, C.H.7
Stoven, S.8
Meier, P.9
Silverman, N.10
-
10
-
-
77956195155
-
Efficient generation of germ line transmitting chimeras from C57BL/6N ES cells by aggregation with outbred host embryos
-
doi: 10.1371/journal.pone.0011260
-
Gertsenstein M, Nutter LM, Reid T, Pereira M, Stanford WL, Rossant J, Nagy A. 2010. Efficient generation of germ line transmitting chimeras from C57BL/6N ES cells by aggregation with outbred host embryos. PLoS ONE 5: el1260 doi: 10.1371/journal.pone.0011260.
-
(2010)
PLoS ONE
, vol.5
-
-
Gertsenstein, M.1
Nutter, L.M.2
Reid, T.3
Pereira, M.4
Stanford, W.L.5
Rossant, J.6
Nagy, A.7
-
11
-
-
80555157616
-
Negative elongation factor accelerates the rate at which heat shock genes are shut off by facilitating dissociation of heat shock factor
-
Ghosh SK, Missra A, Gilmour DS. 2010. Negative elongation factor accelerates the rate at which heat shock genes are shut off by facilitating dissociation of heat shock factor. Mol Cell Biol 31: 4232-4243.
-
(2010)
Mol Cell Biol
, vol.31
, pp. 4232-4243
-
-
Ghosh, S.K.1
Missra, A.2
Gilmour, D.S.3
-
12
-
-
47549090254
-
NELF-mediated stalling of Pol II can enhance gene expression by blocking promoterproximal nucleosome assembly
-
Gilchrist DA, Nechaev S, Lee C, Ghosh SK, Collins JB, Li L, Gilmour D., Adelman K. 2008. NELF-mediated stalling of Pol II can enhance gene expression by blocking promoterproximal nucleosome assembly. Genes Dev 22: 1921-1933.
-
(2008)
Genes Dev
, vol.22
, pp. 1921-1933
-
-
Gilchrist, D.A.1
Nechaev, S.2
Lee, C.3
Ghosh, S.K.4
Collins, J.B.5
Li, L.6
Gilmour, D.7
Adelman, K.8
-
13
-
-
78149477660
-
Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation
-
Gilchrist DA, Dos Santos G, Fargo DC, Xie B, Gao Y, Li L, Adelman K. 2010. Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation. Cell 143: 540-551.
-
(2010)
Cell
, vol.143
, pp. 540-551
-
-
Gilchrist, D.A.1
Dos Santos, G.2
Fargo, D.C.3
Xie, B.4
Gao, Y.5
Li, L.6
Adelman, K.7
-
14
-
-
67849088695
-
Detecting transcriptionally engaged RNA polymerase in eukaryotic cells with permanganate genomic footprinting
-
Gilmour D., Fan R. 2009. Detecting transcriptionally engaged RNA polymerase in eukaryotic cells with permanganate genomic footprinting. Methods 48: 368-374.
-
(2009)
Methods
, vol.48
, pp. 368-374
-
-
Gilmour, D.1
Fan, R.2
-
15
-
-
34447098370
-
A chromatin landmark and transcription initiation at most promoters in human cells
-
Guenther MG, Levine SS, Boyer LA, Jaenisch R, Young RA. 2007. A chromatin landmark and transcription initiation at most promoters in human cells. Cell 130: 77-88.
-
(2007)
Cell
, vol.130
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
16
-
-
79955836460
-
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells
-
Hah N, Danko CG, Core L, Waterfall JJ, Siepel A, Lis J., Kraus WL. 2011. A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells. Cell 145: 622-634.
-
(2011)
Cell
, vol.145
, pp. 622-634
-
-
Hah, N.1
Danko, C.G.2
Core, L.3
Waterfall, J.J.4
Siepel, A.5
Lis, J.6
Kraus, W.L.7
-
17
-
-
45549093494
-
Promoter elements associated with RNA Pol II stalling in the Drosophila embryo
-
Hendrix DA, Hong JW, Zeitlinger J, Rokhsar DS, Levine MS. 2008. Promoter elements associated with RNA Pol II stalling in the Drosophila embryo. Proc Natl Acad Sci 105: 7762-7767.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 7762-7767
-
-
Hendrix, D.A.1
Hong, J.W.2
Zeitlinger, J.3
Rokhsar, D.S.4
Levine, M.S.5
-
19
-
-
2442456719
-
Monomeric and polymeric Gram-negative peptidoglycan but not purified LPS stimulate the Drosophila IMD pathway
-
Kaneko T, Goldman WE, Mellroth P, Steiner H, Fukase K, Kusumoto S, Harley W, Fox A, Golenbock D, Silverman N. 2004. Monomeric and polymeric Gram-negative peptidoglycan but not purified LPS stimulate the Drosophila IMD pathway. Immunity 20: 637-649.
-
(2004)
Immunity
, vol.20
, pp. 637-649
-
-
Kaneko, T.1
Goldman, W.E.2
Mellroth, P.3
Steiner, H.4
Fukase, K.5
Kusumoto, S.6
Harley, W.7
Fox, A.8
Golenbock, D.9
Silverman, N.10
-
20
-
-
43249086572
-
NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila
-
Lee C, Li X, Hechmer A, Eisen M, Biggin MD, Venters BJ, Jiang C, Li J, Pugh BF, Gilmour DS. 2008. NELF and GAGA factor are linked to promoter-proximal pausing at many genes in Drosophila. Mol Cell Biol 28: 3290-3300.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 3290-3300
-
-
Lee, C.1
Li, X.2
Hechmer, A.3
Eisen, M.4
Biggin, M.D.5
Venters, B.J.6
Jiang, C.7
Li, J.8
Pugh, B.F.9
Gilmour, D.S.10
-
21
-
-
34047268684
-
The host defense of Drosophila melanogaster
-
Lemaitre B, Hoffmann J. 2007. The host defense of Drosophila melanogaster. Annu Rev Immunol 25: 697-743.
-
(2007)
Annu Rev Immunol
, vol.25
, pp. 697-743
-
-
Lemaitre, B.1
Hoffmann, J.2
-
22
-
-
78649378267
-
MicroRNA functions in stress responses
-
Leung AK, Sharp PA. 2010. MicroRNA functions in stress responses. Mol Cell 40: 205-215.
-
(2010)
Mol Cell
, vol.40
, pp. 205-215
-
-
Leung, A.K.1
Sharp, P.A.2
-
23
-
-
79955795581
-
Paused RNA polymerase II as a developmental checkpoint
-
Levine M. 2011. Paused RNA polymerase II as a developmental checkpoint. Cell 145: 502-511.
-
(2011)
Cell
, vol.145
, pp. 502-511
-
-
Levine, M.1
-
24
-
-
64249144494
-
A microRNA imparts robustness against environmental fluctuation during development
-
Li X, Cassidy JJ, Reinke CA, Fischboeck S, Carthew RW. 2009. A microRNA imparts robustness against environmental fluctuation during development. Cell 137: 273-282.
-
(2009)
Cell
, vol.137
, pp. 273-282
-
-
Li, X.1
Cassidy, J.J.2
Reinke, C.A.3
Fischboeck, S.4
Carthew, R.W.5
-
25
-
-
79960401863
-
Dynamic transcriptional events in embryonic stem cells mediated by the super elongation complex (SEC)
-
Lin C, Garrett AS, De Kumar B, Smith ER, Gogol M, Seidel C, Krumlauf R, Shilatifard A. 2011. Dynamic transcriptional events in embryonic stem cells mediated by the super elongation complex (SEC). Genes Dev 25: 1486-1498.
-
(2011)
Genes Dev
, vol.25
, pp. 1486-1498
-
-
Lin, C.1
Garrett, A.S.2
de Kumar, B.3
Smith, E.R.4
Gogol, M.5
Seidel, C.6
Krumlauf, R.7
Shilatifard, A.8
-
26
-
-
0032459466
-
Promoter-associated pausing in promoter architecture and postinitiation transcriptional regulation
-
Lis J. 1998. Promoter-associated pausing in promoter architecture and postinitiation transcriptional regulation. Cold Spring Harb Symp Quant Biol 63: 347-356.
-
(1998)
Cold Spring Harb Symp Quant Biol
, vol.63
, pp. 347-356
-
-
Lis, J.1
-
27
-
-
79954562232
-
Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
-
Min IM, Waterfall JJ, Core LJ, Munroe RJ, Schimenti J, Lis JT. 2011. Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells. Genes Dev 25: 742-754.
-
(2011)
Genes Dev
, vol.25
, pp. 742-754
-
-
Min, I.M.1
Waterfall, J.J.2
Core, L.J.3
Munroe, R.J.4
Schimenti, J.5
Lis, J.T.6
-
28
-
-
36549061004
-
RNA polymerase is poised for activation across the genome
-
Muse GW, Gilchrist DA, Nechaev S, Shah R, Parker JS, Grissom SF, Zeitlinger J, Adelman K. 2007. RNA polymerase is poised for activation across the genome. Nat Genet 39: 1507-1511.
-
(2007)
Nat Genet
, vol.39
, pp. 1507-1511
-
-
Muse, G.W.1
Gilchrist, D.A.2
Nechaev, S.3
Shah, R.4
Parker, J.S.5
Grissom, S.F.6
Zeitlinger, J.7
Adelman, K.8
-
29
-
-
0037371682
-
Human transcription elongation factor NELF: Identification of novel subunits and reconstitution of the functionally active complex
-
Narita T, Yamaguchi Y, Yano K, Sugimoto S, Chanarat S, Wada T, Kim DK, Hasegawa J, Omori M, Inukai N, et al. 2003. Human transcription elongation factor NELF: Identification of novel subunits and reconstitution of the functionally active complex. Mol Cell Biol 23: 1863-1873.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 1863-1873
-
-
Narita, T.1
Yamaguchi, Y.2
Yano, K.3
Sugimoto, S.4
Chanarat, S.5
Wada, T.6
Kim, D.K.7
Hasegawa, J.8
Omori, M.9
Inukai, N.10
-
30
-
-
34247552158
-
NELF interacts with CBC and participates in 3' end processing of replication-dependent histone mRNAs
-
Narita T, Yung TM, Yamamoto J, Tsuboi Y, Tanabe H, Tanaka K, Yamaguchi Y, Handa H. 2007. NELF interacts with CBC and participates in 3' end processing of replication-dependent histone mRNAs. Mol Cell 26: 349-365.
-
(2007)
Mol Cell
, vol.26
, pp. 349-365
-
-
Narita, T.1
Yung, T.M.2
Yamamoto, J.3
Tsuboi, Y.4
Tanabe, H.5
Tanaka, K.6
Yamaguchi, Y.7
Handa, H.8
-
31
-
-
45849129033
-
Promoter-proximal Pol II: When stalling speeds things up
-
Nechaev S, Adelman K. 2008. Promoter-proximal Pol II: When stalling speeds things up. Cell Cycle 7: 1539-1544.
-
(2008)
Cell Cycle
, vol.7
, pp. 1539-1544
-
-
Nechaev, S.1
Adelman, K.2
-
32
-
-
74549132843
-
Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila
-
Nechaev S, Fargo DC, dos Santos G, Liu L, Gao Y, Adelman K. 2010. Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila. Science 327: 335-338.
-
(2010)
Science
, vol.327
, pp. 335-338
-
-
Nechaev, S.1
Fargo, D.C.2
dos Santos, G.3
Liu, L.4
Gao, Y.5
Adelman, K.6
-
33
-
-
33746403681
-
Controlling the elongation phase of transcription with P-TEFb
-
Peterlin BM, Price DH. 2006. Controlling the elongation phase of transcription with P-TEFb. Mol Cell 23: 297-305.
-
(2006)
Mol Cell
, vol.23
, pp. 297-305
-
-
Peterlin, B.M.1
Price, D.H.2
-
34
-
-
77951920690
-
c-Myc regulates transcriptional pause release
-
Rahl PB, Lin CY, Seila AC, Flynn RA, McCuine S, Burge CB, Sharp PA, Young RA. 2010. c-Myc regulates transcriptional pause release. Cell 141: 432-445.
-
(2010)
Cell
, vol.141
, pp. 432-445
-
-
Rahl, P.B.1
Lin, C.Y.2
Seila, A.C.3
Flynn, R.A.4
McCuine, S.5
Burge, C.B.6
Sharp, P.A.7
Young, R.A.8
-
35
-
-
0034303480
-
Activation of the Drosophila NF-κB factor Relish by rapid endoproteolytic cleavage
-
Stoven S, Ando I, Kadalayil L, Engstrom Y, Hultmark D. 2000. Activation of the Drosophila NF-κB factor Relish by rapid endoproteolytic cleavage. EMBO Rep 1: 347-352.
-
(2000)
EMBO Rep
, vol.1
, pp. 347-352
-
-
Stoven, S.1
Ando, I.2
Kadalayil, L.3
Engstrom, Y.4
Hultmark, D.5
-
36
-
-
0038284956
-
Caspase-mediated processing of the Drosophila NF-KB factor Relish
-
Stoven S, Silverman N, Junell A, Hedengren-Olcott M, Erturk D, Engstrom Y, Maniatis T, Hultmark D. 2003. Caspase-mediated processing of the Drosophila NF-KB factor Relish. Proc Natl Acad Sci 100: 5991-5996.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 5991-5996
-
-
Stoven, S.1
Silverman, N.2
Junell, A.3
Hedengren-Olcott, M.4
Erturk, D.5
Engstrom, Y.6
Maniatis, T.7
Hultmark, D.8
-
37
-
-
77949901729
-
Human negative elongation factor activates transcription and regulates alternative transcription initiation
-
Sun J, Li R. 2010. Human negative elongation factor activates transcription and regulates alternative transcription initiation. J Biol Chem 285: 6443-6452.
-
(2010)
J Biol Chem
, vol.285
, pp. 6443-6452
-
-
Sun, J.1
Li, R.2
-
38
-
-
0037609009
-
NELF and DSIF cause promoter proximal pausing on the hsp70 promoter in Drosophila
-
Wu CH, Yamaguchi Y, Benjamin LR, Horvat-Gordon M, Washinsky J, Enerly E, Larsson J, Lambertsson A, Handa H, Gilmour D. 2003. NELF and DSIF cause promoter proximal pausing on the hsp70 promoter in Drosophila. Genes Dev 17: 1402-1414.
-
(2003)
Genes Dev
, vol.17
, pp. 1402-1414
-
-
Wu, C.H.1
Yamaguchi, Y.2
Benjamin, L.R.3
Horvat-Gordon, M.4
Washinsky, J.5
Enerly, E.6
Larsson, J.7
Lambertsson, A.8
Handa, H.9
Gilmour, D.10
-
39
-
-
0033515521
-
NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation
-
Yamaguchi Y, Takagi T, Wada T, Yano K, Furuya A, Sugimoto S, Hasegawa J, Handa H. 1999. NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation. Cell 97: 41-51.
-
(1999)
Cell
, vol.97
, pp. 41-51
-
-
Yamaguchi, Y.1
Takagi, T.2
Wada, T.3
Yano, K.4
Furuya, A.5
Sugimoto, S.6
Hasegawa, J.7
Handa, H.8
-
40
-
-
79952660821
-
Control of the embryonic stem cell state
-
Young RA. 2011. Control of the embryonic stem cell state. Cell 144: 940-954.
-
(2011)
Cell
, vol.144
, pp. 940-954
-
-
Young, R.A.1
-
41
-
-
36549013619
-
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
-
Zeitlinger J, Stark A, Kellis M, Hong JW, Nechaev S, Adelman K, Levine M, Young RA. 2007. RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo. Nat Genet 39: 1512-1516.
-
(2007)
Nat Genet
, vol.39
, pp. 1512-1516
-
-
Zeitlinger, J.1
Stark, A.2
Kellis, M.3
Hong, J.W.4
Nechaev, S.5
Adelman, K.6
Levine, M.7
Young, R.A.8
-
42
-
-
78650250161
-
Recruitment timing and dynamics of transcription factors at the Hsp70 loci in living cells
-
Zobeck KL, Buckley MS, Zipfel WR, Lis JT. 2010. Recruitment timing and dynamics of transcription factors at the Hsp70 loci in living cells. Mol Cell 40: 965-975.
-
(2010)
Mol Cell
, vol.40
, pp. 965-975
-
-
Zobeck, K.L.1
Buckley, M.S.2
Zipfel, W.R.3
Lis, J.T.4
|