-
1
-
-
84906791043
-
Long noncoding RNA TARID directs demethylation and activation of the tumor suppressor TCF21 via GADD45A
-
Arab K., Park Y.J., Lindroth A.M., Schäfer A., Oakes C., Weichenhan D., Lukanova A., Lundin E., Risch A., Meister M., Dienemann H., Dyckhoff G., Herold-Mende C., Grummt I., Niehrs C., Plass C. Long noncoding RNA TARID directs demethylation and activation of the tumor suppressor TCF21 via GADD45A. Mol. Cell 2014, 55:604-614.
-
(2014)
Mol. Cell
, vol.55
, pp. 604-614
-
-
Arab, K.1
Park, Y.J.2
Lindroth, A.M.3
Schäfer, A.4
Oakes, C.5
Weichenhan, D.6
Lukanova, A.7
Lundin, E.8
Risch, A.9
Meister, M.10
Dienemann, H.11
Dyckhoff, G.12
Herold-Mende, C.13
Grummt, I.14
Niehrs, C.15
Plass, C.16
-
2
-
-
33846933274
-
Gadd45a promotes epigenetic gene activation by repair-mediated DNA demethylation
-
Barreto G., Schäfer A., Marhold J., Stach D., Swaminathan S.K., Handa V., Doderlein G., Maltry N., Wu W., Lyko F., Niehrs C. Gadd45a promotes epigenetic gene activation by repair-mediated DNA demethylation. Nature 2007, 445:671-675.
-
(2007)
Nature
, vol.445
, pp. 671-675
-
-
Barreto, G.1
Schäfer, A.2
Marhold, J.3
Stach, D.4
Swaminathan, S.K.5
Handa, V.6
Doderlein, G.7
Maltry, N.8
Wu, W.9
Lyko, F.10
Niehrs, C.11
-
3
-
-
0036144048
-
DNA methylation patterns and epigenetic memory
-
Bird A. DNA methylation patterns and epigenetic memory. Genes Dev. 2002, 16:6-21.
-
(2002)
Genes Dev.
, vol.16
, pp. 6-21
-
-
Bird, A.1
-
4
-
-
84872953223
-
TET2 promotes histone O-GlcNAcylation during gene transcription
-
Chen Q., Chen Y., Bian C., Fujiki R., Yu X. TET2 promotes histone O-GlcNAcylation during gene transcription. Nature 2013, 493:561-564.
-
(2013)
Nature
, vol.493
, pp. 561-564
-
-
Chen, Q.1
Chen, Y.2
Bian, C.3
Fujiki, R.4
Yu, X.5
-
5
-
-
79959937861
-
Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair
-
Cortellino S., Xu J., Sannai M., Moore R., Caretti E., Cigliano A., Le Coz M., Devarajan K., Wessels A., Soprano D., Abramowitz L.K., Bartolomei M.S., Rambow F., Bassi M.R., Bruno T., Fanciulli M., Renner C., Klein-Szanto A.J., Matsumoto Y., Kobi D., Davidson I., Alberti C., Larue L., Bellacosa A. Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair. Cell 2011, 146:67-79.
-
(2011)
Cell
, vol.146
, pp. 67-79
-
-
Cortellino, S.1
Xu, J.2
Sannai, M.3
Moore, R.4
Caretti, E.5
Cigliano, A.6
Le Coz, M.7
Devarajan, K.8
Wessels, A.9
Soprano, D.10
Abramowitz, L.K.11
Bartolomei, M.S.12
Rambow, F.13
Bassi, M.R.14
Bruno, T.15
Fanciulli, M.16
Renner, C.17
Klein-Szanto, A.J.18
Matsumoto, Y.19
Kobi, D.20
Davidson, I.21
Alberti, C.22
Larue, L.23
Bellacosa, A.24
more..
-
6
-
-
79956330964
-
CpG islands and the regulation of transcription
-
Deaton A.M., Bird A. CpG islands and the regulation of transcription. Genes Dev. 2011, 25:1010-1022.
-
(2011)
Genes Dev.
, vol.25
, pp. 1010-1022
-
-
Deaton, A.M.1
Bird, A.2
-
7
-
-
33748944811
-
UVB-induced G2 arrest of human melanocytes involves Cdc2 sequestration by Gadd45a in nuclear speckles
-
Fayolle C., Pourchet J., Cohen A., Pedeux R., Puisieux A., Caron de Fromentel C., Dore J.F., Voeltzel T. UVB-induced G2 arrest of human melanocytes involves Cdc2 sequestration by Gadd45a in nuclear speckles. Cell Cycle 2006, 5:1859-1864.
-
(2006)
Cell Cycle
, vol.5
, pp. 1859-1864
-
-
Fayolle, C.1
Pourchet, J.2
Cohen, A.3
Pedeux, R.4
Puisieux, A.5
Caron de Fromentel, C.6
Dore, J.F.7
Voeltzel, T.8
-
8
-
-
80051712275
-
Emerging roles of TET proteins and 5-hydroxymethylcytosines in active DNA demethylation and beyond
-
Guo J.U., Su Y., Zhong C., Ming G.L., Song H. Emerging roles of TET proteins and 5-hydroxymethylcytosines in active DNA demethylation and beyond. Cell Cycle 2011, 10:2662-2668.
-
(2011)
Cell Cycle
, vol.10
, pp. 2662-2668
-
-
Guo, J.U.1
Su, Y.2
Zhong, C.3
Ming, G.L.4
Song, H.5
-
9
-
-
79955538247
-
Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain
-
Guo J.U., Su Y., Zhong C., Ming G.L., Song H. Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain. Cell 2011, 145:423-434.
-
(2011)
Cell
, vol.145
, pp. 423-434
-
-
Guo, J.U.1
Su, Y.2
Zhong, C.3
Ming, G.L.4
Song, H.5
-
11
-
-
84894257068
-
Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA
-
Hashimoto H., Pais J.E., Zhang X., Saleh L., Fu Z.Q., Dai N., Correa I.R., Zheng Y., Cheng X. Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA. Nature 2014, 506:391-395.
-
(2014)
Nature
, vol.506
, pp. 391-395
-
-
Hashimoto, H.1
Pais, J.E.2
Zhang, X.3
Saleh, L.4
Fu, Z.Q.5
Dai, N.6
Correa, I.R.7
Zheng, Y.8
Cheng, X.9
-
12
-
-
80052495940
-
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA
-
He Y.F., Li B.Z., Li Z., Liu P., Wang Y., Tang Q., Ding J., Jia Y., Chen Z., Li L., Sun Y., Li X., Dai Q., Song C.X., Zhang K., He C., Xu G.L. Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science 2011, 333:1303-1307.
-
(2011)
Science
, vol.333
, pp. 1303-1307
-
-
He, Y.F.1
Li, B.Z.2
Li, Z.3
Liu, P.4
Wang, Y.5
Tang, Q.6
Ding, J.7
Jia, Y.8
Chen, Z.9
Li, L.10
Sun, Y.11
Li, X.12
Dai, Q.13
Song, C.X.14
Zhang, K.15
He, C.16
Xu, G.L.17
-
13
-
-
80052461558
-
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
-
Ito S., Shen L., Dai Q., Wu S.C., Collins L.B., Swenberg J.A., He C., Zhang Y. Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 2011, 333:1300-1303.
-
(2011)
Science
, vol.333
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
Wu, S.C.4
Collins, L.B.5
Swenberg, J.A.6
He, C.7
Zhang, Y.8
-
14
-
-
84903182472
-
TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells
-
Jin C., Lu Y., Jelinek J., Liang S., Estecio M.R., Barton M.C., Issa J.P. TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells. Nucleic Acids Res. 2014, 42:6956-6971.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 6956-6971
-
-
Jin, C.1
Lu, Y.2
Jelinek, J.3
Liang, S.4
Estecio, M.R.5
Barton, M.C.6
Issa, J.P.7
-
15
-
-
0035839057
-
The role of DNA methylation in mammalian epigenetics
-
Jones P.A., Takai D. The role of DNA methylation in mammalian epigenetics. Science 2001, 293:1068-1070.
-
(2001)
Science
, vol.293
, pp. 1068-1070
-
-
Jones, P.A.1
Takai, D.2
-
16
-
-
84864722177
-
5-formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription
-
Kellinger M.W., Song C.X., Chong J., Lu X.Y., He C., Wang D. 5-formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription. Nat. Struct. Mol. Biol. 2012, 19:831-833.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 831-833
-
-
Kellinger, M.W.1
Song, C.X.2
Chong, J.3
Lu, X.Y.4
He, C.5
Wang, D.6
-
17
-
-
84922393701
-
Absolute and relative quantification of RNA modifications via biosynthetic isotopomers
-
Kellner S., Ochel A., Thuring K., Spenkuch F., Neumann J., Sharma S., Entian K.D., Schneider D., Helm M. Absolute and relative quantification of RNA modifications via biosynthetic isotopomers. Nucleic Acids Res. 2015, 42:e142.
-
(2015)
Nucleic Acids Res.
, vol.42
, pp. e142
-
-
Kellner, S.1
Ochel, A.2
Thuring, K.3
Spenkuch, F.4
Neumann, J.5
Sharma, S.6
Entian, K.D.7
Schneider, D.8
Helm, M.9
-
18
-
-
79960127277
-
Tissue-specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomes
-
Kinney S.M., Chin H.G., Vaisvila R., Bitinaite J., Zheng Y., Esteve P.O., Feng S., Stroud H., Jacobsen S.E., Pradhan S. Tissue-specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomes. J. Biol. Chem. 2011, 286:24685-24693.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 24685-24693
-
-
Kinney, S.M.1
Chin, H.G.2
Vaisvila, R.3
Bitinaite, J.4
Zheng, Y.5
Esteve, P.O.6
Feng, S.7
Stroud, H.8
Jacobsen, S.E.9
Pradhan, S.10
-
19
-
-
78650175023
-
Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2
-
Ko M., Huang Y., Jankowska A.M., Pape U.J., Tahiliani M., Bandukwala H.S., An J., Lamperti E.D., Koh K.P., Ganetzky R., Liu X.S., Aravind L., Agarwal S., Maciejewski J.P., Rao A. Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2. Nature 2010, 468:839-843.
-
(2010)
Nature
, vol.468
, pp. 839-843
-
-
Ko, M.1
Huang, Y.2
Jankowska, A.M.3
Pape, U.J.4
Tahiliani, M.5
Bandukwala, H.S.6
An, J.7
Lamperti, E.D.8
Koh, K.P.9
Ganetzky, R.10
Liu, X.S.11
Aravind, L.12
Agarwal, S.13
Maciejewski, J.P.14
Rao, A.15
-
20
-
-
0036290413
-
Alloxan is an inhibitor of the enzyme O-linked N-acetylglucosamine transferase
-
Konrad R.J., Zhang F., Hale J.E., Knierman M.D., Becker G.W., Kudlow J.E. Alloxan is an inhibitor of the enzyme O-linked N-acetylglucosamine transferase. Biochem. Biophys. Res. Commun. 2002, 293:207-212.
-
(2002)
Biochem. Biophys. Res. Commun.
, vol.293
, pp. 207-212
-
-
Konrad, R.J.1
Zhang, F.2
Hale, J.E.3
Knierman, M.D.4
Becker, G.W.5
Kudlow, J.E.6
-
21
-
-
66149123748
-
The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
-
Kriaucionis S., Heintz N. The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science 2009, 324:929-930.
-
(2009)
Science
, vol.324
, pp. 929-930
-
-
Kriaucionis, S.1
Heintz, N.2
-
22
-
-
77950443318
-
NER factors are recruited to active promoters and facilitate chromatin modification for transcription in the absence of exogenous genotoxic attack
-
Le May N., Mota-Fernandes D., Velez-Cruz R., Iltis I., Biard D., Egly J.M. NER factors are recruited to active promoters and facilitate chromatin modification for transcription in the absence of exogenous genotoxic attack. Mol. Cell 2010, 38:54-66.
-
(2010)
Mol. Cell
, vol.38
, pp. 54-66
-
-
Le May, N.1
Mota-Fernandes, D.2
Velez-Cruz, R.3
Iltis, I.4
Biard, D.5
Egly, J.M.6
-
23
-
-
84930225330
-
Gadd45a promotes DNA demethylation through TDG
-
Li Z., Gu T.P., Weber A.R., Shen J.Z., Li B.Z., Xie Z.G., Yin R., Guo F., Liu X., Tang F., Wang H., Schär P., Xu G.L. Gadd45a promotes DNA demethylation through TDG. Nucleic Acids Res. 2015, 43:3986-3997.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 3986-3997
-
-
Li, Z.1
Gu, T.P.2
Weber, A.R.3
Shen, J.Z.4
Li, B.Z.5
Xie, Z.G.6
Yin, R.7
Guo, F.8
Liu, X.9
Tang, F.10
Wang, H.11
Schär, P.12
Xu, G.L.13
-
24
-
-
84879663784
-
Global epigenomic reconfiguration during mammalian brain development
-
Lister R., Mukamel E.A., Nery J.R., Urich M., Puddifoot C.A., Johnson N.D., Lucero J., Huang Y., Dwork A.J., Schultz M.D., Yu M., Tonti-Filippini J., Heyn H., Hu S., Wu J.C., Rao A., Esteller M., He C., Haghighi F.G., Sejnowski T.J., Behrens M.M., Ecker J.R. Global epigenomic reconfiguration during mammalian brain development. Science 2013, 341:1237905.
-
(2013)
Science
, vol.341
, pp. 1237905
-
-
Lister, R.1
Mukamel, E.A.2
Nery, J.R.3
Urich, M.4
Puddifoot, C.A.5
Johnson, N.D.6
Lucero, J.7
Huang, Y.8
Dwork, A.J.9
Schultz, M.D.10
Yu, M.11
Tonti-Filippini, J.12
Heyn, H.13
Hu, S.14
Wu, J.C.15
Rao, A.16
Esteller, M.17
He, C.18
Haghighi, F.G.19
Sejnowski, T.J.20
Behrens, M.M.21
Ecker, J.R.22
more..
-
25
-
-
84880554318
-
Quantitative assessment of Tet-induced oxidation products of 5-methylcytosine in cellular and tissue DNA
-
Liu S., Wang J., Su Y., Guerrero C., Zeng Y., Mitra D., Brooks P.J., Fisher D.E., Song H., Wang Y. Quantitative assessment of Tet-induced oxidation products of 5-methylcytosine in cellular and tissue DNA. Nucleic Acids Res. 2013, 41:6421-6429.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 6421-6429
-
-
Liu, S.1
Wang, J.2
Su, Y.3
Guerrero, C.4
Zeng, Y.5
Mitra, D.6
Brooks, P.J.7
Fisher, D.E.8
Song, H.9
Wang, Y.10
-
26
-
-
84899517644
-
Direct decarboxylation of 5-carboxylcytosine by DNA C5-methyltransferases
-
Liutkeviciute Z., Kriukiene E., Licyte J., Rudyte M., Urbanaviciute G., Klimasauskas S. Direct decarboxylation of 5-carboxylcytosine by DNA C5-methyltransferases. J. Am. Chem. Soc. 2014, 136:5884-5887.
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 5884-5887
-
-
Liutkeviciute, Z.1
Kriukiene, E.2
Licyte, J.3
Rudyte, M.4
Urbanaviciute, G.5
Klimasauskas, S.6
-
27
-
-
60749094831
-
Neuronal activity-induced Gadd45b promotes epigenetic DNA demethylation and adult neurogenesis
-
Ma D.K., Jang M.H., Guo J.U., Kitabatake Y., Chang M.L., Pow-Anpongkul N., Flavell R.A., Lu B., Ming G.L., Song H. Neuronal activity-induced Gadd45b promotes epigenetic DNA demethylation and adult neurogenesis. Science 2009, 323:1074-1077.
-
(2009)
Science
, vol.323
, pp. 1074-1077
-
-
Ma, D.K.1
Jang, M.H.2
Guo, J.U.3
Kitabatake, Y.4
Chang, M.L.5
Pow-Anpongkul, N.6
Flavell, R.A.7
Lu, B.8
Ming, G.L.9
Song, H.10
-
28
-
-
80053917872
-
Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites
-
Maiti A., Drohat A.C. Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites. J. Biol. Chem. 2011, 286:35334-35338.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 35334-35338
-
-
Maiti, A.1
Drohat, A.C.2
-
29
-
-
84898892512
-
DNA methylation dynamics during epigenetic reprogramming in the germline and preimplantation embryos
-
Messerschmidt D.M., Knowles B.B., Solter D. DNA methylation dynamics during epigenetic reprogramming in the germline and preimplantation embryos. Genes Dev. 2014, 28:812-828.
-
(2014)
Genes Dev.
, vol.28
, pp. 812-828
-
-
Messerschmidt, D.M.1
Knowles, B.B.2
Solter, D.3
-
30
-
-
10644282845
-
Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: implications for epigenetic reprogramming
-
Morgan H.D., Dean W., Coker H.A., Reik W., Petersen-Mahrt S.K. Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: implications for epigenetic reprogramming. J. Biol. Chem. 2004, 279:52353-52360.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 52353-52360
-
-
Morgan, H.D.1
Dean, W.2
Coker, H.A.3
Reik, W.4
Petersen-Mahrt, S.K.5
-
31
-
-
60549088692
-
Active DNA demethylation and DNA repair
-
Niehrs C. Active DNA demethylation and DNA repair. Differentiation 2009, 77:1-11.
-
(2009)
Differentiation
, vol.77
, pp. 1-11
-
-
Niehrs, C.1
-
32
-
-
84859265962
-
Active DNA demethylation by Gadd45 and DNA repair
-
Niehrs C., Schäfer A. Active DNA demethylation by Gadd45 and DNA repair. Trends Cell Biol. 2012, 22:220-227.
-
(2012)
Trends Cell Biol.
, vol.22
, pp. 220-227
-
-
Niehrs, C.1
Schäfer, A.2
-
33
-
-
84878260646
-
TETonic shift: biological roles of TET proteins in DNA demethylation and transcription
-
Pastor W.A., Aravind L., Rao A. TETonic shift: biological roles of TET proteins in DNA demethylation and transcription. Nat. Rev. Mol. Cell Biol. 2013, 14:341-356.
-
(2013)
Nat. Rev. Mol. Cell Biol.
, vol.14
, pp. 341-356
-
-
Pastor, W.A.1
Aravind, L.2
Rao, A.3
-
34
-
-
84902831568
-
Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA
-
Pfaffeneder T., Spada F., Wagner M., Brandmayr C., Laube S.K., Eisen D., Truss M., Steinbacher J., Hackner B., Kotljarova O., Schuermann D., Michalakis S., Kosmatchev O., Schiesser S., Steigenberger B., Raddaoui N., Kashiwazaki G., Muller U., Spruijt C.G., Vermeulen M., Leonhardt H., Schär P., Muller M., Carell T. Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA. Nat. Chem. Biol. 2014, 10:574-581.
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 574-581
-
-
Pfaffeneder, T.1
Spada, F.2
Wagner, M.3
Brandmayr, C.4
Laube, S.K.5
Eisen, D.6
Truss, M.7
Steinbacher, J.8
Hackner, B.9
Kotljarova, O.10
Schuermann, D.11
Michalakis, S.12
Kosmatchev, O.13
Schiesser, S.14
Steigenberger, B.15
Raddaoui, N.16
Kashiwazaki, G.17
Muller, U.18
Spruijt, C.G.19
Vermeulen, M.20
Leonhardt, H.21
Schär, P.22
Muller, M.23
Carell, T.24
more..
-
35
-
-
57649196594
-
DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45
-
Rai K., Huggins I.J., James S.R., Karpf A.R., Jones D.A., Cairns B.R. DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45. Cell 2008, 135:1201-1212.
-
(2008)
Cell
, vol.135
, pp. 1201-1212
-
-
Rai, K.1
Huggins, I.J.2
James, S.R.3
Karpf, A.R.4
Jones, D.A.5
Cairns, B.R.6
-
36
-
-
84893771625
-
Establishment of methylation patterns in ES cells
-
Sabag O., Zamir A., Keshet I., Hecht M., Ludwig G., Tabib A., Moss J., Cedar H. Establishment of methylation patterns in ES cells. Nat. Struct. Mol. Biol. 2014, 21:110-112.
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 110-112
-
-
Sabag, O.1
Zamir, A.2
Keshet, I.3
Hecht, M.4
Ludwig, G.5
Tabib, A.6
Moss, J.7
Cedar, H.8
-
37
-
-
84934440223
-
Gadd45 proteins: key players of repair-mediated DNA demethylation
-
Schäfer A. Gadd45 proteins: key players of repair-mediated DNA demethylation. Adv. Exp. Med. Biol. 2013, 793:35-50.
-
(2013)
Adv. Exp. Med. Biol.
, vol.793
, pp. 35-50
-
-
Schäfer, A.1
-
38
-
-
84873498678
-
Ing1 functions in DNA demethylation by directing Gadd45a to H3K4me3
-
Schäfer A., Karaulanov E., Stapf U., Döderlein G., Niehrs C. Ing1 functions in DNA demethylation by directing Gadd45a to H3K4me3. Genes Dev. 2013, 27:261-273.
-
(2013)
Genes Dev.
, vol.27
, pp. 261-273
-
-
Schäfer, A.1
Karaulanov, E.2
Stapf, U.3
Döderlein, G.4
Niehrs, C.5
-
39
-
-
78649505459
-
Gemcitabine functions epigenetically by inhibiting repair mediated DNA demethylation
-
Schäfer A., Schomacher L., Barreto G., Döderlein G., Niehrs C. Gemcitabine functions epigenetically by inhibiting repair mediated DNA demethylation. PLoS One 2010, 5:e14060.
-
(2010)
PLoS One
, vol.5
, pp. e14060
-
-
Schäfer, A.1
Schomacher, L.2
Barreto, G.3
Döderlein, G.4
Niehrs, C.5
-
40
-
-
59849090498
-
TAF12 recruits Gadd45a and the nucleotide excision repair complex to the promoter of rRNA genes leading to active DNA demethylation
-
Schmitz K.M., Schmitt N., Hoffmann-Rohrer U., Schäfer A., Grummt I., Mayer C. TAF12 recruits Gadd45a and the nucleotide excision repair complex to the promoter of rRNA genes leading to active DNA demethylation. Mol. Cell 2009, 33:344-353.
-
(2009)
Mol. Cell
, vol.33
, pp. 344-353
-
-
Schmitz, K.M.1
Schmitt, N.2
Hoffmann-Rohrer, U.3
Schäfer, A.4
Grummt, I.5
Mayer, C.6
-
41
-
-
84876946045
-
Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics
-
Shen L., Wu H., Diep D., Yamaguchi S., D'Alessio A.C., Fung H.L., Zhang K., Zhang Y. Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics. Cell 2013, 153:692-706.
-
(2013)
Cell
, vol.153
, pp. 692-706
-
-
Shen, L.1
Wu, H.2
Diep, D.3
Yamaguchi, S.4
D'Alessio, A.C.5
Fung, H.L.6
Zhang, K.7
Zhang, Y.8
-
42
-
-
84880530231
-
Ten-eleven translocation 1 (Tet1) is regulated by O-linked N-acetylglucosamine transferase (Ogt) for target gene repression in mouse embryonic stem cells
-
Shi F.T., Kim H., Lu W., He Q., Liu D., Goodell M.A., Wan M., Songyang Z. Ten-eleven translocation 1 (Tet1) is regulated by O-linked N-acetylglucosamine transferase (Ogt) for target gene repression in mouse embryonic stem cells. J. Biol. Chem. 2013, 288:20776-20784.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 20776-20784
-
-
Shi, F.T.1
Kim, H.2
Lu, W.3
He, Q.4
Liu, D.5
Goodell, M.A.6
Wan, M.7
Songyang, Z.8
-
43
-
-
33751252292
-
Direct observation of individual endogenous protein complexes in situ by proximity ligation
-
Söderberg O., Gullberg M., Jarvius M., Ridderstrale K., Leuchowius K.J., Jarvius J., Wester K., Hydbring P., Bahram F., Larsson L.G., Landegren U. Direct observation of individual endogenous protein complexes in situ by proximity ligation. Nat. Methods 2006, 3:995-1000.
-
(2006)
Nat. Methods
, vol.3
, pp. 995-1000
-
-
Söderberg, O.1
Gullberg, M.2
Jarvius, M.3
Ridderstrale, K.4
Leuchowius, K.J.5
Jarvius, J.6
Wester, K.7
Hydbring, P.8
Bahram, F.9
Larsson, L.G.10
Landegren, U.11
-
44
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
Tahiliani M., Koh K.P., Shen Y., Pastor W.A., Bandukwala H., Brudno Y., Agarwal S., Iyer L.M., Liu D.R., Aravind L., Rao A. Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 2009, 324:930-935.
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
Rao, A.11
-
45
-
-
84894357949
-
A validated quantitative liquid chromatography-tandem quadrupole mass spectrometry method for monitoring isotopologues to evaluate global modified cytosine ratios in genomic DNA
-
Tsuji M., Matsunaga H., Jinno D., Tsukamoto H., Suzuki N., Tomioka Y. A validated quantitative liquid chromatography-tandem quadrupole mass spectrometry method for monitoring isotopologues to evaluate global modified cytosine ratios in genomic DNA. J. Chromatogr. B: Anal. Technol. Biomed. Life Sci. 2014, 953-954:38-47.
-
(2014)
J. Chromatogr. B: Anal. Technol. Biomed. Life Sci.
, pp. 38-47
-
-
Tsuji, M.1
Matsunaga, H.2
Jinno, D.3
Tsukamoto, H.4
Suzuki, N.5
Tomioka, Y.6
-
46
-
-
84555189745
-
DNA methylation: TET proteins-guardians of CpG islands?
-
Williams K., Christensen J., Helin K. DNA methylation: TET proteins-guardians of CpG islands?. EMBO Rep. 2012, 13:28-35.
-
(2012)
EMBO Rep.
, vol.13
, pp. 28-35
-
-
Williams, K.1
Christensen, J.2
Helin, K.3
-
47
-
-
79956292024
-
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells
-
Wu H., D'Alessio A.C., Ito S., Xia K., Wang Z., Cui K., Zhao K., Sun Y.E., Zhang Y. Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells. Nature 2011, 473:389-393.
-
(2011)
Nature
, vol.473
, pp. 389-393
-
-
Wu, H.1
D'Alessio, A.C.2
Ito, S.3
Xia, K.4
Wang, Z.5
Cui, K.6
Zhao, K.7
Sun, Y.E.8
Zhang, Y.9
-
48
-
-
84923999745
-
Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing
-
Wu H., Wu X., Shen L., Zhang Y. Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing. Nat. Biotechnol. 2014, 32:1231-1240.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 1231-1240
-
-
Wu, H.1
Wu, X.2
Shen, L.3
Zhang, Y.4
-
49
-
-
77956095231
-
Active DNA demethylation: many roads lead to Rome
-
Wu S.C., Zhang Y. Active DNA demethylation: many roads lead to Rome. Nat. Rev. Mol. Cell Biol. 2010, 11:607-620.
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 607-620
-
-
Wu, S.C.1
Zhang, Y.2
-
50
-
-
79955948324
-
Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells
-
Xu Y., Wu F., Tan L., Kong L., Xiong L., Deng J., Barbera A.J., Zheng L., Zhang H., Huang S., Min J., Nicholson T., Chen T., Xu G., Shi Y., Zhang K., Shi Y.G. Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells. Mol. Cell 2011, 42:451-464.
-
(2011)
Mol. Cell
, vol.42
, pp. 451-464
-
-
Xu, Y.1
Wu, F.2
Tan, L.3
Kong, L.4
Xiong, L.5
Deng, J.6
Barbera, A.J.7
Zheng, L.8
Zhang, H.9
Huang, S.10
Min, J.11
Nicholson, T.12
Chen, T.13
Xu, G.14
Shi, Y.15
Zhang, K.16
Shi, Y.G.17
|