A validated quantitative liquid chromatography-tandem quadrupole mass spectrometry method for monitoring isotopologues to evaluate global modified cytosine ratios in genomic DNA

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences

Volumn 953-954, Issue 1, 2014, Pages 38-47

  Tsuji, Makoto ^a,b   Matsunaga, Hironori ^b   Jinno, Daisuke ^a   Tsukamoto, Hiroki ^a   Suzuki, Naoto ^a   Tomioka, Yoshihisa ^a  

^a TOHOKU UNIVERSITY   (Japan)

^b DAIICHI SANKYO CO   (Japan)

Author keywords

5 Hydroxymethylcytosine; 5 Methylcytosine; Isotopologue MRM; LC MS MS; Mixed lineage leukemia; Ten eleven translocation

Indexed keywords

5-HYDROXYMETHYLCYTOSINE; 5-METHYLCYTOSINE; ISOTOPOLOGUE-MRM; LC-MS/MS; MIXED LINEAGE LEUKEMIA; TEN-ELEVEN TRANSLOCATION;

ANIMALS; CHROMATOGRAPHY, LIQUID; CYTOSINE; DNA; HUMANS; ISOTOPES; LIMIT OF DETECTION; MICE; TANDEM MASS SPECTROMETRY; TUMOR MARKERS, BIOLOGICAL;

EID: 84894357949     PISSN: 15700232     EISSN: 1873376X     Source Type: Journal    
DOI: 10.1016/j.jchromb.2014.01.050     Document Type: Article

References (42)

1. Kumar S., Cheng X., Klimasauskas S., Mi S., Posfai J., Roberts R.J., Wilson G.G. Nucleic Acids Res. 1994, 22:1.
2. Lister R., Pelizzola M., Dowen R.H., Hawkins R.D., Hon G., Tonti-Filippini J., Nery J.R., Lee L., Ye Z., Ngo Q.M., Edsall L., Antosiewicz-Bourget J., Stewart R., Ruotti V., Millar A.H., Thomson J.A., Ren B., Ecker J.R. Nature 2009, 462:315.
3. Dalton S.R., Bellacosa A. Epigenomics 2012, 4:459.
4. Lister R., Mukamel E.A., Nery J.R., Urich M., Puddifoot C.A., Johnson N.D., Lucero J., Huang Y., Dwork A.J., Schultz M.D., Yu M., Tonti-Filippini J., Heyn H., Hu S., Wu J.C., Rao A., Esteller M., He C., Haghighi F.G., Sejnowski T.J., Behrens M.M., Ecker J.R. Science 2013, 341:1237905.
5. Day J.J., Childs D., Guzman-Karlsson M.C., Kibe M., Moulden J., Song E., Tahir A., Sweatt J.D. Nat. Neurosci. 2013, 16:1445.
6. Wyatt G.R., Cohen S.S. Biochem. J. 1953, 55:774.
7. Penn N.W., Suwalski R., O'Riley C., Bojanowski K., Yura R. Biochem. J. 1972, 126:781.
8. Tardy-Planechaud S., Fujimoto J., Lin S.S., Sowers L.C. Nucleic Acids Res. 1997, 25:553.
9. Kriaucionis S., Heintz N. Science 2009, 324:929.
10. Tahiliani M., Koh K.P., Shen Y., Pastor W.A., Bandukwala H., Brudno Y., Agarwal S., Iyer L.M., Liu D.R., Aravind L., Rao A. Science 2009, 324:930.
11. Munzel M., Globisch D., Carell T. Angew. Chem., Int. Ed. Engl. 2011, 50:6460.
12. Kriukiene E., Liutkeviciute Z., Klimasauskas S. Chem. Soc. Rev. 2012, 41:6916.
13. Globisch D., Munzel M., Muller M., Michalakis S., Wagner M., Koch S., Bruckl T., Biel M., Carell T. PLoS One 2010, 5:e15367.
14. Li W., Liu M. J. Nucleic Acids 2011, 2011:870726.
15. Iyer L.M., Tahiliani M., Rao A., Aravind L. Cell Cycle 2009, 8:1698.
16. Delatte B., Fuks F. Briefings Funct. Genomics 2013, 12:191.
17. Ponnaluri V.K., Maciejewski J.P., Mukherji M. Biochem. Biophys. Res. Commun. 2013, 436:115.
18. Clark S.J., Harrison J., Paul C.L., Frommer M. Nucleic Acids Res. 1994, 22:2990.
19. Booth M.J., Branco M.R., Ficz G., Oxley D., Krueger F., Reik W., Balasubramanian S. Science 2012, 336:934.
20. Yu M., Hon G.C., Szulwach K.E., Song C.X., Jin P., Ren B., He C. Nat. Protoc. 2012, 7:2159.
21. Olkhov-Mitsel E., Bapat B. Cancer Med. 2012, 1:237.
22. Jin S.G., Kadam S., Pfeifer G.P. Nucleic Acids Res. 2010, 38:e125.
23. Pastor W.A., Pape U.J., Huang Y., Henderson H.R., Lister R., Ko M., McLoughlin E.M., Brudno Y., Mahapatra S., Kapranov P., Tahiliani M., Daley G.Q., Liu X.S., Ecker J.R., Milos P.M., Agarwal S., Rao A. Nature 2011, 473:394.
24. Nestor C.E., Ottaviano R., Reddington J., Sproul D., Reinhardt D., Dunican D., Katz E., Dixon J.M., Harrison D.J., Meehan R.R. Genome Res. 2012, 22:467.
25. Ficz G., Branco M.R., Seisenberger S., Santos F., Krueger F., Hore T.A., Marques C.J., Andrews S., Reik W. Nature 2011, 473:398.
26. Munzel M., Globisch D., Bruckl T., Wagner M., Welzmiller V., Michalakis S., Muller M., Biel M., Carell T. Angew. Chem., Int. Ed. Engl. 2010, 49:5375.
27. Le T., Kim K.P., Fan G., Faull K.F. Anal. Biochem. 2011, 412:203.
28. Jin S.G., Jiang Y., Qiu R., Rauch T.A., Wang Y., Schackert G., Krex D., Lu Q., Pfeifer G.P. Cancer Res. 2011, 71:7360.
29. Kraus T.F., Globisch D., Wagner M., Eigenbrod S., Widmann D., Munzel M., Muller M., Pfaffeneder T., Hackner B., Feiden W., Schuller U., Carell T., Kretzschmar H.A. Int. J. Cancer 2012, 131:1577.
30. Yang H., Liu Y., Bai F., Zhang J.Y., Ma S.H., Liu J., Xu Z.D., Zhu H.G., Ling Z.Q., Ye D., Guan K.L., Xiong Y. Oncogene 2013, 32:663.
31. Orr B.A., Haffner M.C., Nelson W.G., Yegnasubramanian S., Eberhart C.G. PLoS One 2012, 7:e41036.
32. Abdel-Wahab O., Levine R.L. Blood 2013, 121:3563.
33. Fukushige S., Horii A. Tohoku J. Exp. Med. 2013, 229:173.
34. Ono R., Taki T., Taketani T., Taniwaki M., Kobayashi H., Hayashi Y. Cancer Res. 2002, 62:4075.
35. Lorsbach R.B., Moore J., Mathew S., Raimondi S.C., Mukatira S.T., Downing J.R. Leukemia 2003, 17:637.
36. Meyer C., Hofmann J., Burmeister T., Groger D., Park T.S., Emerenciano M., Pombo de Oliveira M., Renneville A., Villarese P., Macintyre E., Cave H., Clappier E., Mass-Malo K., Zuna J., Trka J., De Braekeleer E., De Braekeleer M., Oh S.H., Tsaur G., Fechina L., Van der Velden V.H., Van Dongen J.J., Delabesse E., Binato R., Silva M.L., Kustanovich A., Aleinikova O., Harris M.H., Lund-Aho T., Juvonen V., Heidenreich O., Vormoor J., Choi W.W., Jarosova M., Kolenova A., Bueno C., Menendez P., Wehner S., Eckert C., Talmant P., Tondeur S., Lippert E., Launay E., Henry C., Ballerini P., Lapillone H., Callanan M.B., Cayuela J.M., Herbaux C., Cazzaniga G., Kakadiya P.M., Bohlander S., Ahlmann M., Choi J.R., Gameiro P., Lee D.S., Krauter J., Cornillet-Lefebvre P., Te Kronnie G., Schafer B.W., Kubetzko S., Alonso C.N., Zur Stadt U., Sutton R., Venn N.C., Izraeli S., Trakhtenbrot L., Madsen H.O., Archer P., Hancock J., Cerveira N., Teixeira M.R., Lo Nigro L., Moricke A., Stanulla M., Schrappe M., Sedek L., Szczepanski T., Zwaan C.M., Coenen E.A., Van den Heuvel-Eibrink M.M., Strehl S., Dworzak M., Panzer-Grumayer R., Dingermann T., Klingebiel T., Marschalek R. Leukemia 2013, 27:2165.
37. Huang H., Jiang X., Li Z., Li Y., Song C.X., He C., Sun M., Chen P., Gurbuxani S., Wang J., Hong G.M., Elkahloun A.G., Arnovitz S., Szulwach K., Lin L., Street C., Wunderlich M., Dawlaty M., Neilly M.B., Jaenisch R., Yang F.C., Mulloy J.C., Jin P., Liu P.P., Rowley J.D., Xu M., Chen J. PNAS 2013, 110:11994.
38. Lee S.G., Cho S.Y., Kim M.J., Oh S.H., Cho E.H., Lee S., Baek E.J., Choi J.H., Bohlander S.K., Lode L., Richebourg S., Yoon H.J., Marschalek R., Meyer C., Park T.S. Haematologica 2013, 98:e55.
39. Guidance for Industry Bioanalytical Method Validation May, 2001, US Department of Health and Human Service, Food and Drug Administration, Center for Drug Evaluation and Research Center for Veterinary Medicine.
40. Liu S., Wang J., Su Y., Guerrero C., Zeng Y., Mitra D., Brooks P.J., Fisher D.E., Song H., Wang Y. Nucleic Acids Res. 2013, 41:6421.
41. Berglund M., Wieser M.E. Pure Appl. Chem. 2011, 83:397.
42. Liu H., Lam L., Dasgupta P.K. Talanta 2011, 87:307.