메뉴 건너뛰기




Volumn 33, Issue , 2016, Pages 41-51

Intermediate-sensor assisted push-pull strategy and its application in heterologous deoxyviolacein production in Escherichia coli

Author keywords

Biosensor; Deoxyviolacein biosynthesis; High throughput screening; Pathway engineering; Sequential optimization

Indexed keywords

BIOCHEMISTRY; BIOSYNTHESIS; ESCHERICHIA COLI; FLOW CYTOMETRY; METABOLITES; THROUGHPUT;

EID: 84947734391     PISSN: 10967176     EISSN: 10967184     Source Type: Journal    
DOI: 10.1016/j.ymben.2015.10.006     Document Type: Article
Times cited : (61)

References (75)
  • 2
    • 38049001166 scopus 로고    scopus 로고
    • Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels
    • Atsumi S., Hanai T., Liao J.C. Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels. Nature 2008, 451:86-89. 10.1038/nature06450.
    • (2008) Nature , vol.451 , pp. 86-89
    • Atsumi, S.1    Hanai, T.2    Liao, J.C.3
  • 3
    • 84874990225 scopus 로고    scopus 로고
    • Engineering specialized metabolic pathways--is there a room for enzyme improvements?
    • Bar-Even A., Salah Tawfik D. Engineering specialized metabolic pathways--is there a room for enzyme improvements?. Curr. Opin. Biotechnol. 2013, 24:310-319. 10.1016/j.copbio.2012.10.006.
    • (2013) Curr. Opin. Biotechnol. , vol.24 , pp. 310-319
    • Bar-Even, A.1    Salah Tawfik, D.2
  • 4
    • 79958097953 scopus 로고    scopus 로고
    • The moderately efficient enzyme: evolutionary and physicochemical trends shaping enzyme parameters
    • Bar-Even A., Noor E., Savir Y., Liebermeister W., Davidi D., Tawfik D.S., Milo R. The moderately efficient enzyme: evolutionary and physicochemical trends shaping enzyme parameters. Biochemistry 2011, 50:4402-4410. 10.1021/bi2002289.
    • (2011) Biochemistry , vol.50 , pp. 4402-4410
    • Bar-Even, A.1    Noor, E.2    Savir, Y.3    Liebermeister, W.4    Davidi, D.5    Tawfik, D.S.6    Milo, R.7
  • 5
    • 0030201057 scopus 로고    scopus 로고
    • Improving production of aromatic compounds in Escherichia coli by metabolic engineering
    • Berry A. Improving production of aromatic compounds in Escherichia coli by metabolic engineering. Trends Biotechnol. 1996, 14:250-256. 10.1016/0167-7799(96)10033-0.
    • (1996) Trends Biotechnol. , vol.14 , pp. 250-256
    • Berry, A.1
  • 7
    • 84880200801 scopus 로고    scopus 로고
    • Recombineering in Corynebacterium glutamicum combined with optical nanosensors: a general strategy for fast producer strain generation
    • Binder S., Siedler S., Marienhagen J., Bott M., Eggeling L. Recombineering in Corynebacterium glutamicum combined with optical nanosensors: a general strategy for fast producer strain generation. Nucleic Acids Res. 2013, 41:6360-6369. 10.1093/nar/gkt312.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 6360-6369
    • Binder, S.1    Siedler, S.2    Marienhagen, J.3    Bott, M.4    Eggeling, L.5
  • 8
    • 84861434998 scopus 로고    scopus 로고
    • A high-throughput approach to identify genomic variants of bacterial metabolite producers at the single-cell level
    • Binder S., Schendzielorz G., Stäbler N., Krumbach K., Hoffmann K., Bott M., Eggeling L. A high-throughput approach to identify genomic variants of bacterial metabolite producers at the single-cell level. Genome Biol. 2012, 13:R40. 10.1186/gb-2012-13-5-r40.
    • (2012) Genome Biol. , vol.13 , pp. R40
    • Binder, S.1    Schendzielorz, G.2    Stäbler, N.3    Krumbach, K.4    Hoffmann, K.5    Bott, M.6    Eggeling, L.7
  • 9
    • 84925244299 scopus 로고    scopus 로고
    • De novo production of the plant-derived alkaloid strictosidine in yeast
    • Brown S., Clastre M., Courdavault V., O'Connor S.E. De novo production of the plant-derived alkaloid strictosidine in yeast. Proc. Natl. Acad. Sci. U.S.A. 2015, 112:3205-3210. 10.1073/pnas.1423555112.
    • (2015) Proc. Natl. Acad. Sci. U.S.A. , vol.112 , pp. 3205-3210
    • Brown, S.1    Clastre, M.2    Courdavault, V.3    O'Connor, S.E.4
  • 10
    • 84935854110 scopus 로고    scopus 로고
    • Design of an ectoine-responsive AraC mutant and its application in metabolic engineering of ectoine biosynthesis
    • Chen W., Zhang S., Jiang P., Yao J., He Y., Chen L., Gui X., Dong Z., Tang S.-Y. Design of an ectoine-responsive AraC mutant and its application in metabolic engineering of ectoine biosynthesis. Metab. Eng. 2015, 30:149-155. 10.1016/j.ymben.2015.05.004.
    • (2015) Metab. Eng. , vol.30 , pp. 149-155
    • Chen, W.1    Zhang, S.2    Jiang, P.3    Yao, J.4    He, Y.5    Chen, L.6    Gui, X.7    Dong, Z.8    Tang, S.-Y.9
  • 11
    • 79960434236 scopus 로고    scopus 로고
    • Integrating molecular dynamics and co-evolutionary analysis for reliable target prediction and deregulation of the allosteric inhibition of aspartokinase for amino acid production
    • Chen Z., Rappert S., Sun J., Zeng A.-P. Integrating molecular dynamics and co-evolutionary analysis for reliable target prediction and deregulation of the allosteric inhibition of aspartokinase for amino acid production. J. Biotechnol. 2011, 154:248-254. 10.1016/j.jbiotec.2011.05.005.
    • (2011) J. Biotechnol. , vol.154 , pp. 248-254
    • Chen, Z.1    Rappert, S.2    Sun, J.3    Zeng, A.-P.4
  • 12
    • 83655163675 scopus 로고    scopus 로고
    • Deciphering the transcriptional regulatory logic of amino acid metabolism
    • Cho B.-K., Federowicz S., Park Y.-S., Zengler K., Palsson B.Ø. Deciphering the transcriptional regulatory logic of amino acid metabolism. Nat. Chem. Biol. 2012, 8:65-71. 10.1038/nchembio.710.
    • (2012) Nat. Chem. Biol. , vol.8 , pp. 65-71
    • Cho, B.-K.1    Federowicz, S.2    Park, Y.-S.3    Zengler, K.4    Palsson, B.Ø.5
  • 13
    • 84886022252 scopus 로고    scopus 로고
    • Programming adaptive control to evolve increased metabolite production
    • Chou H.H., Keasling J.D. Programming adaptive control to evolve increased metabolite production. Nat. Commun. 2013, 4:2595. 10.1038/ncomms3595.
    • (2013) Nat. Commun. , vol.4 , pp. 2595
    • Chou, H.H.1    Keasling, J.D.2
  • 14
    • 84875521674 scopus 로고    scopus 로고
    • RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
    • Cipriano M.J., Novichkov P.N., Kazakov A.E., Rodionov D.A., Arkin A.P., Gelfand M.S., Dubchak I. RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes. BMC Genomics 2013, 14:213. 10.1186/1471-2164-14-213.
    • (2013) BMC Genomics , vol.14 , pp. 213
    • Cipriano, M.J.1    Novichkov, P.N.2    Kazakov, A.E.3    Rodionov, D.A.4    Arkin, A.P.5    Gelfand, M.S.6    Dubchak, I.7
  • 16
    • 77953642931 scopus 로고    scopus 로고
    • High-throughput metabolic engineering: advances in small-molecule screening and selection
    • Dietrich J.a, McKee A.E., Keasling J.D. High-throughput metabolic engineering: advances in small-molecule screening and selection. Ann. Rev. Biochem. 2010, 79:563-590. 10.1146/annurev-biochem-062608-095938.
    • (2010) Ann. Rev. Biochem. , vol.79 , pp. 563-590
    • Dietrich, J.1    McKee, A.E.2    Keasling, J.D.3
  • 17
    • 84875515904 scopus 로고    scopus 로고
    • Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis
    • Dietrich J.a, Shis D.L., Alikhani A., Keasling J.D. Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis. ACS Synth. Biol. 2013, 2:47-58. 10.1021/sb300091d.
    • (2013) ACS Synth. Biol. , vol.2 , pp. 47-58
    • Dietrich, J.1    Shis, D.L.2    Alikhani, A.3    Keasling, J.D.4
  • 18
    • 65849183178 scopus 로고    scopus 로고
    • Golden gate shuffling: a one-pot DNA shuffling method based on type IIs restriction enzymes
    • Engler C., Gruetzner R., Kandzia R., Marillonnet S. Golden gate shuffling: a one-pot DNA shuffling method based on type IIs restriction enzymes. PLoS One 2009, 4:e5553. 10.1371/journal.pone.0005553.
    • (2009) PLoS One , vol.4 , pp. e5553
    • Engler, C.1    Gruetzner, R.2    Kandzia, R.3    Marillonnet, S.4
  • 19
    • 84924140841 scopus 로고    scopus 로고
    • High crude violacein production from glucose by Escherichia coli engineered with interactive control of tryptophan pathway and violacein biosynthetic pathway
    • Fang M.-Y., Zhang C., Yang S., Cui J.-Y., Jiang P.-X., Lou K., Wachi M., Xing X.-H. High crude violacein production from glucose by Escherichia coli engineered with interactive control of tryptophan pathway and violacein biosynthetic pathway. Microb. Cell Fact. 2015, 14:8. 10.1186/s12934-015-0192-x.
    • (2015) Microb. Cell Fact. , vol.14 , pp. 8
    • Fang, M.-Y.1    Zhang, C.2    Yang, S.3    Cui, J.-Y.4    Jiang, P.-X.5    Lou, K.6    Wachi, M.7    Xing, X.-H.8
  • 20
    • 84903766210 scopus 로고    scopus 로고
    • Efficient search, mapping, and optimization of multi-protein genetic systems in diverse bacteria
    • Farasat I., Kushwaha M., Collens J., Easterbrook M., Guido M., Salis H.M. Efficient search, mapping, and optimization of multi-protein genetic systems in diverse bacteria. Mol. Syst. Biol. 2014, 10(6).
    • (2014) Mol. Syst. Biol. , vol.10 , Issue.6
    • Farasat, I.1    Kushwaha, M.2    Collens, J.3    Easterbrook, M.4    Guido, M.5    Salis, H.M.6
  • 21
    • 0035910426 scopus 로고    scopus 로고
    • Reproducing tna operon regulation in vitro in an S-30 system. Tryptophan induction inhibits cleavage of TnaC peptidyl-tRNA
    • Gong F., Yanofsky C. Reproducing tna operon regulation in vitro in an S-30 system. Tryptophan induction inhibits cleavage of TnaC peptidyl-tRNA. J. Biol. Chem. 2001, 276:1974-1983. 10.1074/jbc.M008892200.
    • (2001) J. Biol. Chem. , vol.276 , pp. 1974-1983
    • Gong, F.1    Yanofsky, C.2
  • 22
    • 0037072627 scopus 로고    scopus 로고
    • Instruction of translating ribosome by nascent peptide
    • Gong F., Yanofsky C. Instruction of translating ribosome by nascent peptide. Science 2002, 297:1864-1867. 10.1126/science.1073997.
    • (2002) Science , vol.297 , pp. 1864-1867
    • Gong, F.1    Yanofsky, C.2
  • 23
    • 84857679736 scopus 로고    scopus 로고
    • One-step of tryptophan attenuator inactivation and promoter swapping to improve the production of L-tryptophan in Escherichia coli
    • Gu P., Yang F., Kang J., Wang Q., Qi Q. One-step of tryptophan attenuator inactivation and promoter swapping to improve the production of L-tryptophan in Escherichia coli. Microb. Cell Fact. 2012, 11:30. 10.1186/1475-2859-11-30.
    • (2012) Microb. Cell Fact. , vol.11 , pp. 30
    • Gu, P.1    Yang, F.2    Kang, J.3    Wang, Q.4    Qi, Q.5
  • 24
    • 84893503533 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli for production of fatty acid short-chain esters through combination of the fatty acid and 2-keto acid pathways
    • Guo D., Zhu J., Deng Z., Liu T. Metabolic engineering of Escherichia coli for production of fatty acid short-chain esters through combination of the fatty acid and 2-keto acid pathways. Metab. Eng. 2014, 22:69-75. 10.1016/j.ymben.2014.01.003.
    • (2014) Metab. Eng. , vol.22 , pp. 69-75
    • Guo, D.1    Zhu, J.2    Deng, Z.3    Liu, T.4
  • 25
    • 77950630020 scopus 로고    scopus 로고
    • Reconstruction of the violacein biosynthetic pathway from Duganella sp. B2 in different heterologous hosts
    • Jiang P., Wang H., Zhang C., Lou K., Xing X.-H. Reconstruction of the violacein biosynthetic pathway from Duganella sp. B2 in different heterologous hosts. Appl. Microbiol. Biotechnol. 2010, 86:1077-1088. 10.1007/s00253-009-2375-z.
    • (2010) Appl. Microbiol. Biotechnol. , vol.86 , pp. 1077-1088
    • Jiang, P.1    Wang, H.2    Zhang, C.3    Lou, K.4    Xing, X.-H.5
  • 26
    • 84867285266 scopus 로고    scopus 로고
    • Pathway redesign for deoxyviolacein biosynthesis in Citrobacter freundii and characterization of this pigment
    • Jiang P., Wang H., Xiao S., Fang M., Zhang R., He S., Lou K., Xing X.-H. Pathway redesign for deoxyviolacein biosynthesis in Citrobacter freundii and characterization of this pigment. Appl. Microbiol. Biotechnol. 2012, 94:1521-1532. 10.1007/s00253-012-3960-0.
    • (2012) Appl. Microbiol. Biotechnol. , vol.94 , pp. 1521-1532
    • Jiang, P.1    Wang, H.2    Xiao, S.3    Fang, M.4    Zhang, R.5    He, S.6    Lou, K.7    Xing, X.-H.8
  • 27
    • 84874608929 scopus 로고    scopus 로고
    • RNA-guided editing of bacterial genomes using CRISPR-Cas systems
    • Jiang W., Bikard D., Cox D., Zhang F., Marraffini L.a RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat. Biotechnol. 2013, 31:233-239. 10.1038/nbt.2508.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 233-239
    • Jiang, W.1    Bikard, D.2    Cox, D.3    Zhang, F.4    Marraffini, L.A.5
  • 28
    • 84911920717 scopus 로고    scopus 로고
    • Metabolic pathway balancing and its role in the production of biofuels and chemicals
    • Jones J.A., Toparlak Ö.D., Koffas M.A. Metabolic pathway balancing and its role in the production of biofuels and chemicals. Curr. Opin. Biotechnol. 2015, 33:52-59. 10.1016/j.copbio.2014.11.013.
    • (2015) Curr. Opin. Biotechnol. , vol.33 , pp. 52-59
    • Jones, J.A.1    Toparlak, Ö.D.2    Koffas, M.A.3
  • 29
    • 0031001311 scopus 로고    scopus 로고
    • Mutational analysis of the feedback sites of phenylalanine-sensitive 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase of Escherichia coli
    • Kikuchi Y., Tsujimoto K., Kurahashi O. Mutational analysis of the feedback sites of phenylalanine-sensitive 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase of Escherichia coli. Appl. Environ. Microbiol. 1997, 63:761-762.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 761-762
    • Kikuchi, Y.1    Tsujimoto, K.2    Kurahashi, O.3
  • 30
    • 84905366023 scopus 로고    scopus 로고
    • From zero to hero-Production of bio-based nylon from renewable resources using engineered Corynebacterium glutamicum
    • Kind S., Neubauer S., Becker J., Yamamoto M., Völkert M., Abendroth G., von, Zelder O., Wittmann C. From zero to hero-Production of bio-based nylon from renewable resources using engineered Corynebacterium glutamicum. Metab. Eng. 2014, 25:113-123. 10.1016/j.ymben.2014.05.007.
    • (2014) Metab. Eng. , vol.25 , pp. 113-123
    • Kind, S.1    Neubauer, S.2    Becker, J.3    Yamamoto, M.4    Völkert, M.5    Abendroth, G.6    von Zelder, O.7    Wittmann, C.8
  • 31
    • 0001443366 scopus 로고
    • Means of terminating reactions
    • Spectrometry Assays Technology
    • Klingenberg M., Praff E. Means of terminating reactions. Methods Enzymol. 1967, 10:680-684. Spectrometry Assays Technology.
    • (1967) Methods Enzymol. , vol.10 , pp. 680-684
    • Klingenberg, M.1    Praff, E.2
  • 32
    • 84890395226 scopus 로고    scopus 로고
    • Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay
    • Lee M.E., Aswani A., Han A.S., Tomlin C.J., Dueber J.E. Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay. Nucleic Acids Res. 2013, 41:10668-10678. 10.1093/nar/gkt809.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 10668-10678
    • Lee, M.E.1    Aswani, A.2    Han, A.S.3    Tomlin, C.J.4    Dueber, J.E.5
  • 33
    • 84945270373 scopus 로고    scopus 로고
    • Development of a synthetic malonyl-CoA sensor in Saccharomyces cerevisiae for intracellular metabolite monitoring and genetic screening
    • Li S., Si T., Wang M., Zhao H. Development of a synthetic malonyl-CoA sensor in Saccharomyces cerevisiae for intracellular metabolite monitoring and genetic screening. ACS Synth. Biol. 2015, 10.1021/acssynbio.5b00069.
    • (2015) ACS Synth. Biol.
    • Li, S.1    Si, T.2    Wang, M.3    Zhao, H.4
  • 34
    • 84896139366 scopus 로고    scopus 로고
    • Extending shikimate pathway for the production of muconic acid and its precursor salicylic acid in Escherichia coli
    • Lin Y., Sun X., Yuan Q., Yan Y. Extending shikimate pathway for the production of muconic acid and its precursor salicylic acid in Escherichia coli. Metab. Eng. 2014, 23:62-69. 10.1016/j.ymben.2014.02.009.
    • (2014) Metab. Eng. , vol.23 , pp. 62-69
    • Lin, Y.1    Sun, X.2    Yuan, Q.3    Yan, Y.4
  • 35
    • 84904566164 scopus 로고    scopus 로고
    • Engineering bacterial phenylalanine 4-hydroxylase for microbial synthesis of human neurotransmitter precursor 5-hydroxytryptophan
    • Lin Y., Sun X., Yuan Q., Yan Y. Engineering bacterial phenylalanine 4-hydroxylase for microbial synthesis of human neurotransmitter precursor 5-hydroxytryptophan. ACS Synth. Biol. 2014, 3:497-505. 10.1021/sb5002505.
    • (2014) ACS Synth. Biol. , vol.3 , pp. 497-505
    • Lin, Y.1    Sun, X.2    Yuan, Q.3    Yan, Y.4
  • 36
    • 79751502382 scopus 로고    scopus 로고
    • Regulation of transcription by unnatural amino acids
    • Liu C.C., Qi L., Yanofsky C., Arkin A.P. Regulation of transcription by unnatural amino acids. Nat. Biotechnol. 2011, 29:164-168. 10.1038/nbt.1741.
    • (2011) Nat. Biotechnol. , vol.29 , pp. 164-168
    • Liu, C.C.1    Qi, L.2    Yanofsky, C.3    Arkin, A.P.4
  • 37
    • 84924239544 scopus 로고    scopus 로고
    • Negative feedback regulation of fatty acid production based on a malonyl-CoA sensor-actuator
    • Liu D., Xiao Y., Evans B.S., Zhang F. Negative feedback regulation of fatty acid production based on a malonyl-CoA sensor-actuator. ACS Synth. Biol. 2015, 4:132-140. 10.1021/sb400158w.
    • (2015) ACS Synth. Biol. , vol.4 , pp. 132-140
    • Liu, D.1    Xiao, Y.2    Evans, B.S.3    Zhang, F.4
  • 39
    • 33747333106 scopus 로고
    • Use of dinitrosalicylic acid reagent for determination of reducing sugar
    • Miller G.L. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal. Chem. 1959, 31:426-428. 10.1021/ac60147a030.
    • (1959) Anal. Chem. , vol.31 , pp. 426-428
    • Miller, G.L.1
  • 40
    • 84862193202 scopus 로고    scopus 로고
    • The development and application of a single-cell biosensor for the detection of l-methionine and branched-chain amino acids
    • Mustafi N., Grünberger A., Kohlheyer D., Bott M., Frunzke J. The development and application of a single-cell biosensor for the detection of l-methionine and branched-chain amino acids. Metab. Eng. 2012, 14:449-457. 10.1016/j.ymben.2012.02.002.
    • (2012) Metab. Eng. , vol.14 , pp. 449-457
    • Mustafi, N.1    Grünberger, A.2    Kohlheyer, D.3    Bott, M.4    Frunzke, J.5
  • 41
    • 84896118650 scopus 로고    scopus 로고
    • Application of a genetically encoded biosensor for live cell imaging of L-valine production in pyruvate dehydrogenase complex-deficient Corynebacterium glutamicum strains
    • Mustafi N., Grünberger A., Mahr R., Helfrich S., Nöh K., Blombach B., Kohlheyer D., Frunzke J. Application of a genetically encoded biosensor for live cell imaging of L-valine production in pyruvate dehydrogenase complex-deficient Corynebacterium glutamicum strains. PLoS One 2014, 9:e85731. 10.1371/journal.pone.0085731.
    • (2014) PLoS One , vol.9 , pp. e85731
    • Mustafi, N.1    Grünberger, A.2    Mahr, R.3    Helfrich, S.4    Nöh, K.5    Blombach, B.6    Kohlheyer, D.7    Frunzke, J.8
  • 44
    • 84919359797 scopus 로고    scopus 로고
    • Evolution-guided optimization of biosynthetic pathways
    • Raman S., Rogers J.K., Taylor N.D., Church G.M. Evolution-guided optimization of biosynthetic pathways. Proc. Natl. Acad. Sci. 2014, 111:201409523. 10.1073/pnas.1409523111.
    • (2014) Proc. Natl. Acad. Sci. , vol.111 , pp. 201409523
    • Raman, S.1    Rogers, J.K.2    Taylor, N.D.3    Church, G.M.4
  • 47
    • 84923923224 scopus 로고    scopus 로고
    • Systems metabolic engineering of Escherichia coli for gram scale production of the antitumor drug deoxyviolacein from glycerol
    • Rodrigues A.L., Becker J., de Souza Lima A.O., Porto L.M., Wittmann C. Systems metabolic engineering of Escherichia coli for gram scale production of the antitumor drug deoxyviolacein from glycerol. Biotechnol. Bioeng. 2014, 111:2280-2289. 10.1002/bit.25297.
    • (2014) Biotechnol. Bioeng. , vol.111 , pp. 2280-2289
    • Rodrigues, A.L.1    Becker, J.2    de Souza Lima, A.O.3    Porto, L.M.4    Wittmann, C.5
  • 49
    • 79957534528 scopus 로고    scopus 로고
    • The ribosome binding site calculator
    • Salis H.M. The ribosome binding site calculator. Method Enzymol. 2011, 498:19-42.
    • (2011) Method Enzymol. , vol.498 , pp. 19-42
    • Salis, H.M.1
  • 50
    • 70349964350 scopus 로고    scopus 로고
    • Automated design of synthetic ribosome binding sites to control protein expression
    • Salis H.M., Mirsky E.A., Voigt C.A. Automated design of synthetic ribosome binding sites to control protein expression. Nat. Biotechnol. 2009, 27:946-950. 10.1038/nbt.1568.
    • (2009) Nat. Biotechnol. , vol.27 , pp. 946-950
    • Salis, H.M.1    Mirsky, E.A.2    Voigt, C.A.3
  • 52
    • 84887778351 scopus 로고    scopus 로고
    • Novel biosensors based on flavonoid-responsive transcriptional regulators introduced into Escherichia coli
    • Siedler S., Stahlhut S.G., Malla S., Maury J., Neves A.R. Novel biosensors based on flavonoid-responsive transcriptional regulators introduced into Escherichia coli. Metab. Eng. 2014, 21:2-8. 10.1016/j.ymben.2013.10.011.
    • (2014) Metab. Eng. , vol.21 , pp. 2-8
    • Siedler, S.1    Stahlhut, S.G.2    Malla, S.3    Maury, J.4    Neves, A.R.5
  • 53
    • 0035933197 scopus 로고    scopus 로고
    • The structures of anthranilate synthase of Serratia marcescens crystallized in the presence of (i) its substrates, chorismate and glutamine, and a product, glutamate, and (ii) its end-product inhibitor, L-tryptophan
    • Spraggon G., Kim C., Nguyen-Huu X., Yee M.C., Yanofsky C., Mills S.E. The structures of anthranilate synthase of Serratia marcescens crystallized in the presence of (i) its substrates, chorismate and glutamine, and a product, glutamate, and (ii) its end-product inhibitor, L-tryptophan. Proc. Natl. Acad. Sci. U.S.A. 2001, 98:6021-6026. 10.1073/pnas.111150298.
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 6021-6026
    • Spraggon, G.1    Kim, C.2    Nguyen-Huu, X.3    Yee, M.C.4    Yanofsky, C.5    Mills, S.E.6
  • 54
    • 79251580632 scopus 로고    scopus 로고
    • Design and application of a mevalonate-responsive regulatory protein
    • Tang S.-Y., Cirino P.C. Design and application of a mevalonate-responsive regulatory protein. Angew. Chem. Int. Ed. Engl. 2011, 50:1084-1086. 10.1002/anie.201006083.
    • (2011) Angew. Chem. Int. Ed. Engl. , vol.50 , pp. 1084-1086
    • Tang, S.-Y.1    Cirino, P.C.2
  • 55
    • 42149120662 scopus 로고    scopus 로고
    • AraC regulatory protein mutants with altered effector specificity
    • Tang S.-Y., Fazelinia H., Cirino P.C. AraC regulatory protein mutants with altered effector specificity. J. Am. Chem. Soc. 2008, 130:5267-5271. 10.1021/ja7109053.
    • (2008) J. Am. Chem. Soc. , vol.130 , pp. 5267-5271
    • Tang, S.-Y.1    Fazelinia, H.2    Cirino, P.C.3
  • 56
    • 84879999713 scopus 로고    scopus 로고
    • Screening for enhanced triacetic acid lactone production by recombinant Escherichia coli expressing a designed triacetic acid lactone reporter
    • Tang S.-Y., Qian S., Akinterinwa O., Frei C.S., Gredell J.A., Cirino P.C. Screening for enhanced triacetic acid lactone production by recombinant Escherichia coli expressing a designed triacetic acid lactone reporter. J. Am. Chem. Soc. 2013, 135:10099-10103. 10.1021/ja402654z.
    • (2013) J. Am. Chem. Soc. , vol.135 , pp. 10099-10103
    • Tang, S.-Y.1    Qian, S.2    Akinterinwa, O.3    Frei, C.S.4    Gredell, J.A.5    Cirino, P.C.6
  • 57
    • 84863470108 scopus 로고    scopus 로고
    • Biosynthesis and characterization of violacein, deoxyviolacein and oxyviolacein in heterologous host, and their antimicrobial activities
    • Wang H., Wang F., Zhu X., Yan Y., Yu X., Jiang P., Xing X.H. Biosynthesis and characterization of violacein, deoxyviolacein and oxyviolacein in heterologous host, and their antimicrobial activities. Biochem. Eng. J. 2012, 67:148-155. 10.1016/j.bej.2012.06.005.
    • (2012) Biochem. Eng. J. , vol.67 , pp. 148-155
    • Wang, H.1    Wang, F.2    Zhu, X.3    Yan, Y.4    Yu, X.5    Jiang, P.6    Xing, X.H.7
  • 58
    • 68949161807 scopus 로고    scopus 로고
    • Programming cells by multiplex genome engineering and accelerated evolution
    • Wang H.H., Isaacs F.J., Carr P.a, Sun Z.Z., Xu G., Forest C.R., Church G.M. Programming cells by multiplex genome engineering and accelerated evolution. Nature 2009, 460:894-898. 10.1038/nature08187.
    • (2009) Nature , vol.460 , pp. 894-898
    • Wang, H.H.1    Isaacs, F.J.2    Carr, P.A.3    Sun, Z.Z.4    Xu, G.5    Forest, C.R.6    Church, G.M.7
  • 59
    • 84857097177 scopus 로고    scopus 로고
    • RNA-guided genetic silencing systems in bacteria and archaea
    • Wiedenheft B., Sternberg S.H., Doudna J.a RNA-guided genetic silencing systems in bacteria and archaea. Nature 2012, 482:331-338. 10.1038/nature10886.
    • (2012) Nature , vol.482 , pp. 331-338
    • Wiedenheft, B.1    Sternberg, S.H.2    Doudna, J.A.3
  • 61
    • 84872221971 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli for (2S)-pinocembrin production from glucose by a modular metabolic strategy
    • Wu J., Du G., Zhou J., Chen J. Metabolic engineering of Escherichia coli for (2S)-pinocembrin production from glucose by a modular metabolic strategy. Metab. Eng. 2013, 16:48-55. 10.1016/j.ymben.2012.11.009.
    • (2013) Metab. Eng. , vol.16 , pp. 48-55
    • Wu, J.1    Du, G.2    Zhou, J.3    Chen, J.4
  • 62
    • 84930193177 scopus 로고    scopus 로고
    • Construction of lycopene-overproducing Saccharomyces cerevisiae by combining directed evolution and metabolic engineering
    • Xie W., Lv X., Ye L., Zhou P., Yu H. Construction of lycopene-overproducing Saccharomyces cerevisiae by combining directed evolution and metabolic engineering. Metab. Eng. 2015, 30:69-78. 10.1016/j.ymben.2015.04.009.
    • (2015) Metab. Eng. , vol.30 , pp. 69-78
    • Xie, W.1    Lv, X.2    Ye, L.3    Zhou, P.4    Yu, H.5
  • 63
    • 84905668376 scopus 로고    scopus 로고
    • Improving fatty acids production by engineering dynamic pathway regulation and metabolic control
    • Xu P., Li L., Zhang F., Stephanopoulos G., Koffas M. Improving fatty acids production by engineering dynamic pathway regulation and metabolic control. Proc. Natl. Acad. Sci. 2014, 111:11299-11304. 10.1073/pnas.1406401111.
    • (2014) Proc. Natl. Acad. Sci. , vol.111 , pp. 11299-11304
    • Xu, P.1    Li, L.2    Zhang, F.3    Stephanopoulos, G.4    Koffas, M.5
  • 64
    • 84896702596 scopus 로고    scopus 로고
    • Design and kinetic analysis of a hybrid promoter-regulator system for malonyl-CoA sensing in Escherichia coli
    • Xu P., Wang W., Li L., Bhan N., Zhang F., Koffas M.A.G. Design and kinetic analysis of a hybrid promoter-regulator system for malonyl-CoA sensing in Escherichia coli. ACS Chem. Biol. 2014, 9:451-458. 10.1021/cb400623m.
    • (2014) ACS Chem. Biol. , vol.9 , pp. 451-458
    • Xu, P.1    Wang, W.2    Li, L.3    Bhan, N.4    Zhang, F.5    Koffas, M.A.G.6
  • 65
    • 84877804801 scopus 로고    scopus 로고
    • Modular optimization of multi-gene pathways for fatty acids production in E. coli
    • Xu P., Gu Q., Wang W., Wong L., Bower A.G.W., Collins C.H., Koffas M.A.G. Modular optimization of multi-gene pathways for fatty acids production in E. coli. Nat. Commun. 2013, 4:1409. 10.1038/ncomms2425.
    • (2013) Nat. Commun. , vol.4 , pp. 1409
    • Xu, P.1    Gu, Q.2    Wang, W.3    Wong, L.4    Bower, A.G.W.5    Collins, C.H.6    Koffas, M.A.G.7
  • 66
    • 80053589978 scopus 로고    scopus 로고
    • Fed-batch fermentation of recombinant Citrobacter freundii with expression of a violacein-synthesizing gene cluster for efficient violacein production from glycerol
    • Yang C., Jiang P., Xiao S., Zhang C., Lou K., Xing X.-H. Fed-batch fermentation of recombinant Citrobacter freundii with expression of a violacein-synthesizing gene cluster for efficient violacein production from glycerol. Biochem. Eng. J. 2011, 57:55-62. 10.1016/j.bej.2011.08.008.
    • (2011) Biochem. Eng. J. , vol.57 , pp. 55-62
    • Yang, C.1    Jiang, P.2    Xiao, S.3    Zhang, C.4    Lou, K.5    Xing, X.-H.6
  • 67
    • 84879164975 scopus 로고    scopus 로고
    • Synthetic RNA devices to expedite the evolution of metabolite-producing microbes
    • Yang J., Seo S.W., Jang S., Shin S.-I., Lim C.H., Roh T.-Y., Jung G.Y. Synthetic RNA devices to expedite the evolution of metabolite-producing microbes. Nat. Commun. 2013, 4:1413. 10.1038/ncomms2404.
    • (2013) Nat. Commun. , vol.4 , pp. 1413
    • Yang, J.1    Seo, S.W.2    Jang, S.3    Shin, S.-I.4    Lim, C.H.5    Roh, T.-Y.6    Jung, G.Y.7
  • 68
    • 0026006958 scopus 로고
    • Physiological studies of tryptophan transport and tryptophanase operon induction in Escherichia coli
    • Yanofsky C., Horn V., Gollnick P. Physiological studies of tryptophan transport and tryptophanase operon induction in Escherichia coli. J. Bacteriol. 1991, 173:6009-6017.
    • (1991) J. Bacteriol. , vol.173 , pp. 6009-6017
    • Yanofsky, C.1    Horn, V.2    Gollnick, P.3
  • 69
    • 67749130626 scopus 로고    scopus 로고
    • Characteristics of low molecular weight heparin production by an ultrafiltration membrane bioreactor using maltose binding protein fused heparinase I
    • Ye F., Kuang Y., Chen S., Zhang C., Chen Y., Xing X.-H. Characteristics of low molecular weight heparin production by an ultrafiltration membrane bioreactor using maltose binding protein fused heparinase I. Biochem. Eng. J. 2009, 46:193-198. 10.1016/j.bej.2009.05.007.
    • (2009) Biochem. Eng. J. , vol.46 , pp. 193-198
    • Ye, F.1    Kuang, Y.2    Chen, S.3    Zhang, C.4    Chen, Y.5    Xing, X.-H.6
  • 70
    • 29544444196 scopus 로고    scopus 로고
    • Chromosomal promoter replacement of the isoprenoid pathway for enhancing carotenoid production in E. coli
    • Yuan L.Z., Rouvière P.E., Larossa R.A., Suh W. Chromosomal promoter replacement of the isoprenoid pathway for enhancing carotenoid production in E. coli. Metab. Eng. 2006, 8:79-90. 10.1016/j.ymben.2005.08.005.
    • (2006) Metab. Eng. , vol.8 , pp. 79-90
    • Yuan, L.Z.1    Rouvière, P.E.2    Larossa, R.A.3    Suh, W.4
  • 72
    • 84869039746 scopus 로고    scopus 로고
    • Enhancing fatty acid production by the expression of the regulatory transcription factor FadR
    • Zhang F., Ouellet M., Batth T.S., Adams P.D., Petzold C.J., Mukhopadhyay A., Keasling J.D. Enhancing fatty acid production by the expression of the regulatory transcription factor FadR. Metab. Eng. 2012, 14:653-660. 10.1016/j.ymben.2012.08.009.
    • (2012) Metab. Eng. , vol.14 , pp. 653-660
    • Zhang, F.1    Ouellet, M.2    Batth, T.S.3    Adams, P.D.4    Petzold, C.J.5    Mukhopadhyay, A.6    Keasling, J.D.7
  • 74
    • 84875670791 scopus 로고    scopus 로고
    • Engineering central metabolic modules of Escherichia coli for improving β-carotene production
    • Zhao J., Li Q., Sun T., Zhu X., Xu H., Tang J., Zhang X., Ma Y. Engineering central metabolic modules of Escherichia coli for improving β-carotene production. Metab. Eng. 2013, 17:42-50. 10.1016/j.ymben.2013.02.002.
    • (2013) Metab. Eng. , vol.17 , pp. 42-50
    • Zhao, J.1    Li, Q.2    Sun, T.3    Zhu, X.4    Xu, H.5    Tang, J.6    Zhang, X.7    Ma, Y.8
  • 75
    • 84855188845 scopus 로고    scopus 로고
    • Development of L-tryptophan production strains by defined genetic modification in Escherichia coli
    • Zhao Z.-J., Zou C., Zhu Y.-X., Dai J., Chen S., Wu D., Wu J., Chen J. Development of L-tryptophan production strains by defined genetic modification in Escherichia coli. J. Ind. Microbiol. Biotechnol. 2011, 38:1921-1929. 10.1007/s10295-011-0978-8.
    • (2011) J. Ind. Microbiol. Biotechnol. , vol.38 , pp. 1921-1929
    • Zhao, Z.-J.1    Zou, C.2    Zhu, Y.-X.3    Dai, J.4    Chen, S.5    Wu, D.6    Wu, J.7    Chen, J.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.