-
1
-
-
77957329119
-
Isoprenoid pathway optimization for Taxol precursor overproduction in Escherichia coli
-
Ajikumar P.K., Xiao W.-H., Tyo K.E.J., Wang Y., Simeon F., Leonard E., Mucha O., Phon T.H., Pfeifer B., Stephanopoulos G. Isoprenoid pathway optimization for Taxol precursor overproduction in Escherichia coli. Science 2010, 330:70-74. 10.1126/science.1191652.
-
(2010)
Science
, vol.330
, pp. 70-74
-
-
Ajikumar, P.K.1
Xiao, W.-H.2
Tyo, K.E.J.3
Wang, Y.4
Simeon, F.5
Leonard, E.6
Mucha, O.7
Phon, T.H.8
Pfeifer, B.9
Stephanopoulos, G.10
-
2
-
-
38049001166
-
Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels
-
Atsumi S., Hanai T., Liao J.C. Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels. Nature 2008, 451:86-89. 10.1038/nature06450.
-
(2008)
Nature
, vol.451
, pp. 86-89
-
-
Atsumi, S.1
Hanai, T.2
Liao, J.C.3
-
3
-
-
84874990225
-
Engineering specialized metabolic pathways--is there a room for enzyme improvements?
-
Bar-Even A., Salah Tawfik D. Engineering specialized metabolic pathways--is there a room for enzyme improvements?. Curr. Opin. Biotechnol. 2013, 24:310-319. 10.1016/j.copbio.2012.10.006.
-
(2013)
Curr. Opin. Biotechnol.
, vol.24
, pp. 310-319
-
-
Bar-Even, A.1
Salah Tawfik, D.2
-
4
-
-
79958097953
-
The moderately efficient enzyme: evolutionary and physicochemical trends shaping enzyme parameters
-
Bar-Even A., Noor E., Savir Y., Liebermeister W., Davidi D., Tawfik D.S., Milo R. The moderately efficient enzyme: evolutionary and physicochemical trends shaping enzyme parameters. Biochemistry 2011, 50:4402-4410. 10.1021/bi2002289.
-
(2011)
Biochemistry
, vol.50
, pp. 4402-4410
-
-
Bar-Even, A.1
Noor, E.2
Savir, Y.3
Liebermeister, W.4
Davidi, D.5
Tawfik, D.S.6
Milo, R.7
-
5
-
-
0030201057
-
Improving production of aromatic compounds in Escherichia coli by metabolic engineering
-
Berry A. Improving production of aromatic compounds in Escherichia coli by metabolic engineering. Trends Biotechnol. 1996, 14:250-256. 10.1016/0167-7799(96)10033-0.
-
(1996)
Trends Biotechnol.
, vol.14
, pp. 250-256
-
-
Berry, A.1
-
6
-
-
84902154110
-
Multivariate modular metabolic engineering for pathway and strain optimization
-
Biggs B.W., De Paepe B., Santos C.N.S., De Mey M., Kumaran Ajikumar P. Multivariate modular metabolic engineering for pathway and strain optimization. Curr. Opin. Biotechnol. 2014, 29:156-162. 10.1016/j.copbio.2014.05.005.
-
(2014)
Curr. Opin. Biotechnol.
, vol.29
, pp. 156-162
-
-
Biggs, B.W.1
De Paepe, B.2
Santos, C.N.S.3
De Mey, M.4
Kumaran Ajikumar, P.5
-
7
-
-
84880200801
-
Recombineering in Corynebacterium glutamicum combined with optical nanosensors: a general strategy for fast producer strain generation
-
Binder S., Siedler S., Marienhagen J., Bott M., Eggeling L. Recombineering in Corynebacterium glutamicum combined with optical nanosensors: a general strategy for fast producer strain generation. Nucleic Acids Res. 2013, 41:6360-6369. 10.1093/nar/gkt312.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 6360-6369
-
-
Binder, S.1
Siedler, S.2
Marienhagen, J.3
Bott, M.4
Eggeling, L.5
-
8
-
-
84861434998
-
A high-throughput approach to identify genomic variants of bacterial metabolite producers at the single-cell level
-
Binder S., Schendzielorz G., Stäbler N., Krumbach K., Hoffmann K., Bott M., Eggeling L. A high-throughput approach to identify genomic variants of bacterial metabolite producers at the single-cell level. Genome Biol. 2012, 13:R40. 10.1186/gb-2012-13-5-r40.
-
(2012)
Genome Biol.
, vol.13
, pp. R40
-
-
Binder, S.1
Schendzielorz, G.2
Stäbler, N.3
Krumbach, K.4
Hoffmann, K.5
Bott, M.6
Eggeling, L.7
-
9
-
-
84925244299
-
De novo production of the plant-derived alkaloid strictosidine in yeast
-
Brown S., Clastre M., Courdavault V., O'Connor S.E. De novo production of the plant-derived alkaloid strictosidine in yeast. Proc. Natl. Acad. Sci. U.S.A. 2015, 112:3205-3210. 10.1073/pnas.1423555112.
-
(2015)
Proc. Natl. Acad. Sci. U.S.A.
, vol.112
, pp. 3205-3210
-
-
Brown, S.1
Clastre, M.2
Courdavault, V.3
O'Connor, S.E.4
-
10
-
-
84935854110
-
Design of an ectoine-responsive AraC mutant and its application in metabolic engineering of ectoine biosynthesis
-
Chen W., Zhang S., Jiang P., Yao J., He Y., Chen L., Gui X., Dong Z., Tang S.-Y. Design of an ectoine-responsive AraC mutant and its application in metabolic engineering of ectoine biosynthesis. Metab. Eng. 2015, 30:149-155. 10.1016/j.ymben.2015.05.004.
-
(2015)
Metab. Eng.
, vol.30
, pp. 149-155
-
-
Chen, W.1
Zhang, S.2
Jiang, P.3
Yao, J.4
He, Y.5
Chen, L.6
Gui, X.7
Dong, Z.8
Tang, S.-Y.9
-
11
-
-
79960434236
-
Integrating molecular dynamics and co-evolutionary analysis for reliable target prediction and deregulation of the allosteric inhibition of aspartokinase for amino acid production
-
Chen Z., Rappert S., Sun J., Zeng A.-P. Integrating molecular dynamics and co-evolutionary analysis for reliable target prediction and deregulation of the allosteric inhibition of aspartokinase for amino acid production. J. Biotechnol. 2011, 154:248-254. 10.1016/j.jbiotec.2011.05.005.
-
(2011)
J. Biotechnol.
, vol.154
, pp. 248-254
-
-
Chen, Z.1
Rappert, S.2
Sun, J.3
Zeng, A.-P.4
-
12
-
-
83655163675
-
Deciphering the transcriptional regulatory logic of amino acid metabolism
-
Cho B.-K., Federowicz S., Park Y.-S., Zengler K., Palsson B.Ø. Deciphering the transcriptional regulatory logic of amino acid metabolism. Nat. Chem. Biol. 2012, 8:65-71. 10.1038/nchembio.710.
-
(2012)
Nat. Chem. Biol.
, vol.8
, pp. 65-71
-
-
Cho, B.-K.1
Federowicz, S.2
Park, Y.-S.3
Zengler, K.4
Palsson, B.Ø.5
-
13
-
-
84886022252
-
Programming adaptive control to evolve increased metabolite production
-
Chou H.H., Keasling J.D. Programming adaptive control to evolve increased metabolite production. Nat. Commun. 2013, 4:2595. 10.1038/ncomms3595.
-
(2013)
Nat. Commun.
, vol.4
, pp. 2595
-
-
Chou, H.H.1
Keasling, J.D.2
-
14
-
-
84875521674
-
RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
-
Cipriano M.J., Novichkov P.N., Kazakov A.E., Rodionov D.A., Arkin A.P., Gelfand M.S., Dubchak I. RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes. BMC Genomics 2013, 14:213. 10.1186/1471-2164-14-213.
-
(2013)
BMC Genomics
, vol.14
, pp. 213
-
-
Cipriano, M.J.1
Novichkov, P.N.2
Kazakov, A.E.3
Rodionov, D.A.4
Arkin, A.P.5
Gelfand, M.S.6
Dubchak, I.7
-
15
-
-
84931573824
-
An enzyme-coupled biosensor enables (S)-reticuline production in yeast from glucose
-
DeLoache W.C., Russ Z.N., Narcross L., Gonzales A.M., Martin V.J.J., Dueber J.E. An enzyme-coupled biosensor enables (S)-reticuline production in yeast from glucose. Nat. Chem. Biol. 2015, 11:465-471. 10.1038/nchembio.1816.
-
(2015)
Nat. Chem. Biol.
, vol.11
, pp. 465-471
-
-
DeLoache, W.C.1
Russ, Z.N.2
Narcross, L.3
Gonzales, A.M.4
Martin, V.J.J.5
Dueber, J.E.6
-
16
-
-
77953642931
-
High-throughput metabolic engineering: advances in small-molecule screening and selection
-
Dietrich J.a, McKee A.E., Keasling J.D. High-throughput metabolic engineering: advances in small-molecule screening and selection. Ann. Rev. Biochem. 2010, 79:563-590. 10.1146/annurev-biochem-062608-095938.
-
(2010)
Ann. Rev. Biochem.
, vol.79
, pp. 563-590
-
-
Dietrich, J.1
McKee, A.E.2
Keasling, J.D.3
-
17
-
-
84875515904
-
Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis
-
Dietrich J.a, Shis D.L., Alikhani A., Keasling J.D. Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis. ACS Synth. Biol. 2013, 2:47-58. 10.1021/sb300091d.
-
(2013)
ACS Synth. Biol.
, vol.2
, pp. 47-58
-
-
Dietrich, J.1
Shis, D.L.2
Alikhani, A.3
Keasling, J.D.4
-
18
-
-
65849183178
-
Golden gate shuffling: a one-pot DNA shuffling method based on type IIs restriction enzymes
-
Engler C., Gruetzner R., Kandzia R., Marillonnet S. Golden gate shuffling: a one-pot DNA shuffling method based on type IIs restriction enzymes. PLoS One 2009, 4:e5553. 10.1371/journal.pone.0005553.
-
(2009)
PLoS One
, vol.4
, pp. e5553
-
-
Engler, C.1
Gruetzner, R.2
Kandzia, R.3
Marillonnet, S.4
-
19
-
-
84924140841
-
High crude violacein production from glucose by Escherichia coli engineered with interactive control of tryptophan pathway and violacein biosynthetic pathway
-
Fang M.-Y., Zhang C., Yang S., Cui J.-Y., Jiang P.-X., Lou K., Wachi M., Xing X.-H. High crude violacein production from glucose by Escherichia coli engineered with interactive control of tryptophan pathway and violacein biosynthetic pathway. Microb. Cell Fact. 2015, 14:8. 10.1186/s12934-015-0192-x.
-
(2015)
Microb. Cell Fact.
, vol.14
, pp. 8
-
-
Fang, M.-Y.1
Zhang, C.2
Yang, S.3
Cui, J.-Y.4
Jiang, P.-X.5
Lou, K.6
Wachi, M.7
Xing, X.-H.8
-
20
-
-
84903766210
-
Efficient search, mapping, and optimization of multi-protein genetic systems in diverse bacteria
-
Farasat I., Kushwaha M., Collens J., Easterbrook M., Guido M., Salis H.M. Efficient search, mapping, and optimization of multi-protein genetic systems in diverse bacteria. Mol. Syst. Biol. 2014, 10(6).
-
(2014)
Mol. Syst. Biol.
, vol.10
, Issue.6
-
-
Farasat, I.1
Kushwaha, M.2
Collens, J.3
Easterbrook, M.4
Guido, M.5
Salis, H.M.6
-
21
-
-
0035910426
-
Reproducing tna operon regulation in vitro in an S-30 system. Tryptophan induction inhibits cleavage of TnaC peptidyl-tRNA
-
Gong F., Yanofsky C. Reproducing tna operon regulation in vitro in an S-30 system. Tryptophan induction inhibits cleavage of TnaC peptidyl-tRNA. J. Biol. Chem. 2001, 276:1974-1983. 10.1074/jbc.M008892200.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 1974-1983
-
-
Gong, F.1
Yanofsky, C.2
-
22
-
-
0037072627
-
Instruction of translating ribosome by nascent peptide
-
Gong F., Yanofsky C. Instruction of translating ribosome by nascent peptide. Science 2002, 297:1864-1867. 10.1126/science.1073997.
-
(2002)
Science
, vol.297
, pp. 1864-1867
-
-
Gong, F.1
Yanofsky, C.2
-
23
-
-
84857679736
-
One-step of tryptophan attenuator inactivation and promoter swapping to improve the production of L-tryptophan in Escherichia coli
-
Gu P., Yang F., Kang J., Wang Q., Qi Q. One-step of tryptophan attenuator inactivation and promoter swapping to improve the production of L-tryptophan in Escherichia coli. Microb. Cell Fact. 2012, 11:30. 10.1186/1475-2859-11-30.
-
(2012)
Microb. Cell Fact.
, vol.11
, pp. 30
-
-
Gu, P.1
Yang, F.2
Kang, J.3
Wang, Q.4
Qi, Q.5
-
24
-
-
84893503533
-
Metabolic engineering of Escherichia coli for production of fatty acid short-chain esters through combination of the fatty acid and 2-keto acid pathways
-
Guo D., Zhu J., Deng Z., Liu T. Metabolic engineering of Escherichia coli for production of fatty acid short-chain esters through combination of the fatty acid and 2-keto acid pathways. Metab. Eng. 2014, 22:69-75. 10.1016/j.ymben.2014.01.003.
-
(2014)
Metab. Eng.
, vol.22
, pp. 69-75
-
-
Guo, D.1
Zhu, J.2
Deng, Z.3
Liu, T.4
-
25
-
-
77950630020
-
Reconstruction of the violacein biosynthetic pathway from Duganella sp. B2 in different heterologous hosts
-
Jiang P., Wang H., Zhang C., Lou K., Xing X.-H. Reconstruction of the violacein biosynthetic pathway from Duganella sp. B2 in different heterologous hosts. Appl. Microbiol. Biotechnol. 2010, 86:1077-1088. 10.1007/s00253-009-2375-z.
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.86
, pp. 1077-1088
-
-
Jiang, P.1
Wang, H.2
Zhang, C.3
Lou, K.4
Xing, X.-H.5
-
26
-
-
84867285266
-
Pathway redesign for deoxyviolacein biosynthesis in Citrobacter freundii and characterization of this pigment
-
Jiang P., Wang H., Xiao S., Fang M., Zhang R., He S., Lou K., Xing X.-H. Pathway redesign for deoxyviolacein biosynthesis in Citrobacter freundii and characterization of this pigment. Appl. Microbiol. Biotechnol. 2012, 94:1521-1532. 10.1007/s00253-012-3960-0.
-
(2012)
Appl. Microbiol. Biotechnol.
, vol.94
, pp. 1521-1532
-
-
Jiang, P.1
Wang, H.2
Xiao, S.3
Fang, M.4
Zhang, R.5
He, S.6
Lou, K.7
Xing, X.-H.8
-
27
-
-
84874608929
-
RNA-guided editing of bacterial genomes using CRISPR-Cas systems
-
Jiang W., Bikard D., Cox D., Zhang F., Marraffini L.a RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat. Biotechnol. 2013, 31:233-239. 10.1038/nbt.2508.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 233-239
-
-
Jiang, W.1
Bikard, D.2
Cox, D.3
Zhang, F.4
Marraffini, L.A.5
-
28
-
-
84911920717
-
Metabolic pathway balancing and its role in the production of biofuels and chemicals
-
Jones J.A., Toparlak Ö.D., Koffas M.A. Metabolic pathway balancing and its role in the production of biofuels and chemicals. Curr. Opin. Biotechnol. 2015, 33:52-59. 10.1016/j.copbio.2014.11.013.
-
(2015)
Curr. Opin. Biotechnol.
, vol.33
, pp. 52-59
-
-
Jones, J.A.1
Toparlak, Ö.D.2
Koffas, M.A.3
-
29
-
-
0031001311
-
Mutational analysis of the feedback sites of phenylalanine-sensitive 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase of Escherichia coli
-
Kikuchi Y., Tsujimoto K., Kurahashi O. Mutational analysis of the feedback sites of phenylalanine-sensitive 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase of Escherichia coli. Appl. Environ. Microbiol. 1997, 63:761-762.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 761-762
-
-
Kikuchi, Y.1
Tsujimoto, K.2
Kurahashi, O.3
-
30
-
-
84905366023
-
From zero to hero-Production of bio-based nylon from renewable resources using engineered Corynebacterium glutamicum
-
Kind S., Neubauer S., Becker J., Yamamoto M., Völkert M., Abendroth G., von, Zelder O., Wittmann C. From zero to hero-Production of bio-based nylon from renewable resources using engineered Corynebacterium glutamicum. Metab. Eng. 2014, 25:113-123. 10.1016/j.ymben.2014.05.007.
-
(2014)
Metab. Eng.
, vol.25
, pp. 113-123
-
-
Kind, S.1
Neubauer, S.2
Becker, J.3
Yamamoto, M.4
Völkert, M.5
Abendroth, G.6
von Zelder, O.7
Wittmann, C.8
-
31
-
-
0001443366
-
Means of terminating reactions
-
Spectrometry Assays Technology
-
Klingenberg M., Praff E. Means of terminating reactions. Methods Enzymol. 1967, 10:680-684. Spectrometry Assays Technology.
-
(1967)
Methods Enzymol.
, vol.10
, pp. 680-684
-
-
Klingenberg, M.1
Praff, E.2
-
32
-
-
84890395226
-
Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay
-
Lee M.E., Aswani A., Han A.S., Tomlin C.J., Dueber J.E. Expression-level optimization of a multi-enzyme pathway in the absence of a high-throughput assay. Nucleic Acids Res. 2013, 41:10668-10678. 10.1093/nar/gkt809.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 10668-10678
-
-
Lee, M.E.1
Aswani, A.2
Han, A.S.3
Tomlin, C.J.4
Dueber, J.E.5
-
33
-
-
84945270373
-
Development of a synthetic malonyl-CoA sensor in Saccharomyces cerevisiae for intracellular metabolite monitoring and genetic screening
-
Li S., Si T., Wang M., Zhao H. Development of a synthetic malonyl-CoA sensor in Saccharomyces cerevisiae for intracellular metabolite monitoring and genetic screening. ACS Synth. Biol. 2015, 10.1021/acssynbio.5b00069.
-
(2015)
ACS Synth. Biol.
-
-
Li, S.1
Si, T.2
Wang, M.3
Zhao, H.4
-
34
-
-
84896139366
-
Extending shikimate pathway for the production of muconic acid and its precursor salicylic acid in Escherichia coli
-
Lin Y., Sun X., Yuan Q., Yan Y. Extending shikimate pathway for the production of muconic acid and its precursor salicylic acid in Escherichia coli. Metab. Eng. 2014, 23:62-69. 10.1016/j.ymben.2014.02.009.
-
(2014)
Metab. Eng.
, vol.23
, pp. 62-69
-
-
Lin, Y.1
Sun, X.2
Yuan, Q.3
Yan, Y.4
-
35
-
-
84904566164
-
Engineering bacterial phenylalanine 4-hydroxylase for microbial synthesis of human neurotransmitter precursor 5-hydroxytryptophan
-
Lin Y., Sun X., Yuan Q., Yan Y. Engineering bacterial phenylalanine 4-hydroxylase for microbial synthesis of human neurotransmitter precursor 5-hydroxytryptophan. ACS Synth. Biol. 2014, 3:497-505. 10.1021/sb5002505.
-
(2014)
ACS Synth. Biol.
, vol.3
, pp. 497-505
-
-
Lin, Y.1
Sun, X.2
Yuan, Q.3
Yan, Y.4
-
36
-
-
79751502382
-
Regulation of transcription by unnatural amino acids
-
Liu C.C., Qi L., Yanofsky C., Arkin A.P. Regulation of transcription by unnatural amino acids. Nat. Biotechnol. 2011, 29:164-168. 10.1038/nbt.1741.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 164-168
-
-
Liu, C.C.1
Qi, L.2
Yanofsky, C.3
Arkin, A.P.4
-
37
-
-
84924239544
-
Negative feedback regulation of fatty acid production based on a malonyl-CoA sensor-actuator
-
Liu D., Xiao Y., Evans B.S., Zhang F. Negative feedback regulation of fatty acid production based on a malonyl-CoA sensor-actuator. ACS Synth. Biol. 2015, 4:132-140. 10.1021/sb400158w.
-
(2015)
ACS Synth. Biol.
, vol.4
, pp. 132-140
-
-
Liu, D.1
Xiao, Y.2
Evans, B.S.3
Zhang, F.4
-
38
-
-
84893244181
-
Interactions of the TnaC nascent peptide with rRNA in the exit tunnel enable the ribosome to respond to free tryptophan
-
Martínez A.K., Gordon E., Sengupta A., Shirole N., Klepacki D., Martinez-Garriga B., Brown L.M., Benedik M.J., Yanofsky C., Mankin A.S., Vazquez-Laslop N., Sachs M.S., Cruz-Vera L.R. Interactions of the TnaC nascent peptide with rRNA in the exit tunnel enable the ribosome to respond to free tryptophan. Nucleic Acids Res. 2014, 42:1245-1256. 10.1093/nar/gkt923.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 1245-1256
-
-
Martínez, A.K.1
Gordon, E.2
Sengupta, A.3
Shirole, N.4
Klepacki, D.5
Martinez-Garriga, B.6
Brown, L.M.7
Benedik, M.J.8
Yanofsky, C.9
Mankin, A.S.10
Vazquez-Laslop, N.11
Sachs, M.S.12
Cruz-Vera, L.R.13
-
39
-
-
33747333106
-
Use of dinitrosalicylic acid reagent for determination of reducing sugar
-
Miller G.L. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal. Chem. 1959, 31:426-428. 10.1021/ac60147a030.
-
(1959)
Anal. Chem.
, vol.31
, pp. 426-428
-
-
Miller, G.L.1
-
40
-
-
84862193202
-
The development and application of a single-cell biosensor for the detection of l-methionine and branched-chain amino acids
-
Mustafi N., Grünberger A., Kohlheyer D., Bott M., Frunzke J. The development and application of a single-cell biosensor for the detection of l-methionine and branched-chain amino acids. Metab. Eng. 2012, 14:449-457. 10.1016/j.ymben.2012.02.002.
-
(2012)
Metab. Eng.
, vol.14
, pp. 449-457
-
-
Mustafi, N.1
Grünberger, A.2
Kohlheyer, D.3
Bott, M.4
Frunzke, J.5
-
41
-
-
84896118650
-
Application of a genetically encoded biosensor for live cell imaging of L-valine production in pyruvate dehydrogenase complex-deficient Corynebacterium glutamicum strains
-
Mustafi N., Grünberger A., Mahr R., Helfrich S., Nöh K., Blombach B., Kohlheyer D., Frunzke J. Application of a genetically encoded biosensor for live cell imaging of L-valine production in pyruvate dehydrogenase complex-deficient Corynebacterium glutamicum strains. PLoS One 2014, 9:e85731. 10.1371/journal.pone.0085731.
-
(2014)
PLoS One
, vol.9
, pp. e85731
-
-
Mustafi, N.1
Grünberger, A.2
Mahr, R.3
Helfrich, S.4
Nöh, K.5
Blombach, B.6
Kohlheyer, D.7
Frunzke, J.8
-
43
-
-
84876784070
-
High-level semi-synthetic production of the potent antimalarial artemisinin
-
Paddon C.J., Westfall P.J., Pitera D.J., Benjamin K., Fisher K., McPhee D., Leavell M.D., Tai a, Main a, Eng D., Polichuk D.R., Teoh K.H., Reed D.W., Treynor T., Lenihan J., Fleck M., Bajad S., Dang G., Dengrove D., Diola D., Dorin G., Ellens K.W., Fickes S., Galazzo J., Gaucher S.P., Geistlinger T., Henry R., Hepp M., Horning T., Iqbal T., Jiang H., Kizer L., Lieu B., Melis D., Moss N., Regentin R., Secrest S., Tsuruta H., Vazquez R., Westblade L.F., Xu L., Yu M., Zhang Y., Zhao L., Lievense J., Covello P.S., Keasling J.D., Reiling K.K., Renninger N.S., Newman J.D. High-level semi-synthetic production of the potent antimalarial artemisinin. Nature 2013, 496:528-532. 10.1038/nature12051.
-
(2013)
Nature
, vol.496
, pp. 528-532
-
-
Paddon, C.J.1
Westfall, P.J.2
Pitera, D.J.3
Benjamin, K.4
Fisher, K.5
McPhee, D.6
Leavell, M.D.7
Tai, A.8
Main, A.9
Eng, D.10
Polichuk, D.R.11
Teoh, K.H.12
Reed, D.W.13
Treynor, T.14
Lenihan, J.15
Fleck, M.16
Bajad, S.17
Dang, G.18
Dengrove, D.19
Diola, D.20
Dorin, G.21
Ellens, K.W.22
Fickes, S.23
Galazzo, J.24
Gaucher, S.P.25
Geistlinger, T.26
Henry, R.27
Hepp, M.28
Horning, T.29
Iqbal, T.30
Jiang, H.31
Kizer, L.32
Lieu, B.33
Melis, D.34
Moss, N.35
Regentin, R.36
Secrest, S.37
Tsuruta, H.38
Vazquez, R.39
Westblade, L.F.40
Xu, L.41
Yu, M.42
Zhang, Y.43
Zhao, L.44
Lievense, J.45
Covello, P.S.46
Keasling, J.D.47
Reiling, K.K.48
Renninger, N.S.49
Newman, J.D.50
more..
-
44
-
-
84919359797
-
Evolution-guided optimization of biosynthetic pathways
-
Raman S., Rogers J.K., Taylor N.D., Church G.M. Evolution-guided optimization of biosynthetic pathways. Proc. Natl. Acad. Sci. 2014, 111:201409523. 10.1073/pnas.1409523111.
-
(2014)
Proc. Natl. Acad. Sci.
, vol.111
, pp. 201409523
-
-
Raman, S.1
Rogers, J.K.2
Taylor, N.D.3
Church, G.M.4
-
45
-
-
84916207914
-
Engineering allostery
-
Raman S., Taylor N., Genuth N., Fields S., Church G.M. Engineering allostery. Trends Genet. 2014, 30:521-528. 10.1016/j.tig.2014.09.004.
-
(2014)
Trends Genet.
, vol.30
, pp. 521-528
-
-
Raman, S.1
Taylor, N.2
Genuth, N.3
Fields, S.4
Church, G.M.5
-
46
-
-
33645870422
-
Production of the antimalarial drug precursor artemisinic acid in engineered yeast
-
Ro D.-K., Paradise E.M., Ouellet M., Fisher K.J., Newman K.L., Ndungu J.M., Ho K.A., Eachus R.A., Ham T.S., Kirby J., Chang M.C.Y., Withers S.T., Shiba Y., Sarpong R., Keasling J.D. Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature 2006, 440:940-943. 10.1038/nature04640.
-
(2006)
Nature
, vol.440
, pp. 940-943
-
-
Ro, D.-K.1
Paradise, E.M.2
Ouellet, M.3
Fisher, K.J.4
Newman, K.L.5
Ndungu, J.M.6
Ho, K.A.7
Eachus, R.A.8
Ham, T.S.9
Kirby, J.10
Chang, M.C.Y.11
Withers, S.T.12
Shiba, Y.13
Sarpong, R.14
Keasling, J.D.15
-
47
-
-
84923923224
-
Systems metabolic engineering of Escherichia coli for gram scale production of the antitumor drug deoxyviolacein from glycerol
-
Rodrigues A.L., Becker J., de Souza Lima A.O., Porto L.M., Wittmann C. Systems metabolic engineering of Escherichia coli for gram scale production of the antitumor drug deoxyviolacein from glycerol. Biotechnol. Bioeng. 2014, 111:2280-2289. 10.1002/bit.25297.
-
(2014)
Biotechnol. Bioeng.
, vol.111
, pp. 2280-2289
-
-
Rodrigues, A.L.1
Becker, J.2
de Souza Lima, A.O.3
Porto, L.M.4
Wittmann, C.5
-
48
-
-
84884166429
-
Systems metabolic engineering of Escherichia coli for production of the antitumor drugs violacein and deoxyviolacein
-
Rodrigues A.L., Trachtmann N., Becker J., Lohanatha A.F., Blotenberg J., Bolten C.J., Korneli C., de Souza Lima A.O., Porto L.M., Sprenger G.A., Wittmann C. Systems metabolic engineering of Escherichia coli for production of the antitumor drugs violacein and deoxyviolacein. Metab. Eng. 2013, 20:29-41. 10.1016/j.ymben.2013.08.004.
-
(2013)
Metab. Eng.
, vol.20
, pp. 29-41
-
-
Rodrigues, A.L.1
Trachtmann, N.2
Becker, J.3
Lohanatha, A.F.4
Blotenberg, J.5
Bolten, C.J.6
Korneli, C.7
de Souza Lima, A.O.8
Porto, L.M.9
Sprenger, G.A.10
Wittmann, C.11
-
49
-
-
79957534528
-
The ribosome binding site calculator
-
Salis H.M. The ribosome binding site calculator. Method Enzymol. 2011, 498:19-42.
-
(2011)
Method Enzymol.
, vol.498
, pp. 19-42
-
-
Salis, H.M.1
-
50
-
-
70349964350
-
Automated design of synthetic ribosome binding sites to control protein expression
-
Salis H.M., Mirsky E.A., Voigt C.A. Automated design of synthetic ribosome binding sites to control protein expression. Nat. Biotechnol. 2009, 27:946-950. 10.1038/nbt.1568.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 946-950
-
-
Salis, H.M.1
Mirsky, E.A.2
Voigt, C.A.3
-
51
-
-
84902679527
-
Taking control over control: use of product sensing in single cells to remove flux control at key enzymes in biosynthesis pathways
-
Schendzielorz G., Dippong M., Grünberger A., Kohlheyer D., Yoshida A., Binder S., Nishiyama C., Nishiyama M., Bott M., Eggeling L. Taking control over control: use of product sensing in single cells to remove flux control at key enzymes in biosynthesis pathways. ACS Synth. Biol. 2014, 3:21-219. 10.1021/sb400059y.
-
(2014)
ACS Synth. Biol.
, vol.3
, pp. 21-219
-
-
Schendzielorz, G.1
Dippong, M.2
Grünberger, A.3
Kohlheyer, D.4
Yoshida, A.5
Binder, S.6
Nishiyama, C.7
Nishiyama, M.8
Bott, M.9
Eggeling, L.10
-
52
-
-
84887778351
-
Novel biosensors based on flavonoid-responsive transcriptional regulators introduced into Escherichia coli
-
Siedler S., Stahlhut S.G., Malla S., Maury J., Neves A.R. Novel biosensors based on flavonoid-responsive transcriptional regulators introduced into Escherichia coli. Metab. Eng. 2014, 21:2-8. 10.1016/j.ymben.2013.10.011.
-
(2014)
Metab. Eng.
, vol.21
, pp. 2-8
-
-
Siedler, S.1
Stahlhut, S.G.2
Malla, S.3
Maury, J.4
Neves, A.R.5
-
53
-
-
0035933197
-
The structures of anthranilate synthase of Serratia marcescens crystallized in the presence of (i) its substrates, chorismate and glutamine, and a product, glutamate, and (ii) its end-product inhibitor, L-tryptophan
-
Spraggon G., Kim C., Nguyen-Huu X., Yee M.C., Yanofsky C., Mills S.E. The structures of anthranilate synthase of Serratia marcescens crystallized in the presence of (i) its substrates, chorismate and glutamine, and a product, glutamate, and (ii) its end-product inhibitor, L-tryptophan. Proc. Natl. Acad. Sci. U.S.A. 2001, 98:6021-6026. 10.1073/pnas.111150298.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 6021-6026
-
-
Spraggon, G.1
Kim, C.2
Nguyen-Huu, X.3
Yee, M.C.4
Yanofsky, C.5
Mills, S.E.6
-
54
-
-
79251580632
-
Design and application of a mevalonate-responsive regulatory protein
-
Tang S.-Y., Cirino P.C. Design and application of a mevalonate-responsive regulatory protein. Angew. Chem. Int. Ed. Engl. 2011, 50:1084-1086. 10.1002/anie.201006083.
-
(2011)
Angew. Chem. Int. Ed. Engl.
, vol.50
, pp. 1084-1086
-
-
Tang, S.-Y.1
Cirino, P.C.2
-
55
-
-
42149120662
-
AraC regulatory protein mutants with altered effector specificity
-
Tang S.-Y., Fazelinia H., Cirino P.C. AraC regulatory protein mutants with altered effector specificity. J. Am. Chem. Soc. 2008, 130:5267-5271. 10.1021/ja7109053.
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 5267-5271
-
-
Tang, S.-Y.1
Fazelinia, H.2
Cirino, P.C.3
-
56
-
-
84879999713
-
Screening for enhanced triacetic acid lactone production by recombinant Escherichia coli expressing a designed triacetic acid lactone reporter
-
Tang S.-Y., Qian S., Akinterinwa O., Frei C.S., Gredell J.A., Cirino P.C. Screening for enhanced triacetic acid lactone production by recombinant Escherichia coli expressing a designed triacetic acid lactone reporter. J. Am. Chem. Soc. 2013, 135:10099-10103. 10.1021/ja402654z.
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 10099-10103
-
-
Tang, S.-Y.1
Qian, S.2
Akinterinwa, O.3
Frei, C.S.4
Gredell, J.A.5
Cirino, P.C.6
-
57
-
-
84863470108
-
Biosynthesis and characterization of violacein, deoxyviolacein and oxyviolacein in heterologous host, and their antimicrobial activities
-
Wang H., Wang F., Zhu X., Yan Y., Yu X., Jiang P., Xing X.H. Biosynthesis and characterization of violacein, deoxyviolacein and oxyviolacein in heterologous host, and their antimicrobial activities. Biochem. Eng. J. 2012, 67:148-155. 10.1016/j.bej.2012.06.005.
-
(2012)
Biochem. Eng. J.
, vol.67
, pp. 148-155
-
-
Wang, H.1
Wang, F.2
Zhu, X.3
Yan, Y.4
Yu, X.5
Jiang, P.6
Xing, X.H.7
-
58
-
-
68949161807
-
Programming cells by multiplex genome engineering and accelerated evolution
-
Wang H.H., Isaacs F.J., Carr P.a, Sun Z.Z., Xu G., Forest C.R., Church G.M. Programming cells by multiplex genome engineering and accelerated evolution. Nature 2009, 460:894-898. 10.1038/nature08187.
-
(2009)
Nature
, vol.460
, pp. 894-898
-
-
Wang, H.H.1
Isaacs, F.J.2
Carr, P.A.3
Sun, Z.Z.4
Xu, G.5
Forest, C.R.6
Church, G.M.7
-
59
-
-
84857097177
-
RNA-guided genetic silencing systems in bacteria and archaea
-
Wiedenheft B., Sternberg S.H., Doudna J.a RNA-guided genetic silencing systems in bacteria and archaea. Nature 2012, 482:331-338. 10.1038/nature10886.
-
(2012)
Nature
, vol.482
, pp. 331-338
-
-
Wiedenheft, B.1
Sternberg, S.H.2
Doudna, J.A.3
-
61
-
-
84872221971
-
Metabolic engineering of Escherichia coli for (2S)-pinocembrin production from glucose by a modular metabolic strategy
-
Wu J., Du G., Zhou J., Chen J. Metabolic engineering of Escherichia coli for (2S)-pinocembrin production from glucose by a modular metabolic strategy. Metab. Eng. 2013, 16:48-55. 10.1016/j.ymben.2012.11.009.
-
(2013)
Metab. Eng.
, vol.16
, pp. 48-55
-
-
Wu, J.1
Du, G.2
Zhou, J.3
Chen, J.4
-
62
-
-
84930193177
-
Construction of lycopene-overproducing Saccharomyces cerevisiae by combining directed evolution and metabolic engineering
-
Xie W., Lv X., Ye L., Zhou P., Yu H. Construction of lycopene-overproducing Saccharomyces cerevisiae by combining directed evolution and metabolic engineering. Metab. Eng. 2015, 30:69-78. 10.1016/j.ymben.2015.04.009.
-
(2015)
Metab. Eng.
, vol.30
, pp. 69-78
-
-
Xie, W.1
Lv, X.2
Ye, L.3
Zhou, P.4
Yu, H.5
-
63
-
-
84905668376
-
Improving fatty acids production by engineering dynamic pathway regulation and metabolic control
-
Xu P., Li L., Zhang F., Stephanopoulos G., Koffas M. Improving fatty acids production by engineering dynamic pathway regulation and metabolic control. Proc. Natl. Acad. Sci. 2014, 111:11299-11304. 10.1073/pnas.1406401111.
-
(2014)
Proc. Natl. Acad. Sci.
, vol.111
, pp. 11299-11304
-
-
Xu, P.1
Li, L.2
Zhang, F.3
Stephanopoulos, G.4
Koffas, M.5
-
64
-
-
84896702596
-
Design and kinetic analysis of a hybrid promoter-regulator system for malonyl-CoA sensing in Escherichia coli
-
Xu P., Wang W., Li L., Bhan N., Zhang F., Koffas M.A.G. Design and kinetic analysis of a hybrid promoter-regulator system for malonyl-CoA sensing in Escherichia coli. ACS Chem. Biol. 2014, 9:451-458. 10.1021/cb400623m.
-
(2014)
ACS Chem. Biol.
, vol.9
, pp. 451-458
-
-
Xu, P.1
Wang, W.2
Li, L.3
Bhan, N.4
Zhang, F.5
Koffas, M.A.G.6
-
65
-
-
84877804801
-
Modular optimization of multi-gene pathways for fatty acids production in E. coli
-
Xu P., Gu Q., Wang W., Wong L., Bower A.G.W., Collins C.H., Koffas M.A.G. Modular optimization of multi-gene pathways for fatty acids production in E. coli. Nat. Commun. 2013, 4:1409. 10.1038/ncomms2425.
-
(2013)
Nat. Commun.
, vol.4
, pp. 1409
-
-
Xu, P.1
Gu, Q.2
Wang, W.3
Wong, L.4
Bower, A.G.W.5
Collins, C.H.6
Koffas, M.A.G.7
-
66
-
-
80053589978
-
Fed-batch fermentation of recombinant Citrobacter freundii with expression of a violacein-synthesizing gene cluster for efficient violacein production from glycerol
-
Yang C., Jiang P., Xiao S., Zhang C., Lou K., Xing X.-H. Fed-batch fermentation of recombinant Citrobacter freundii with expression of a violacein-synthesizing gene cluster for efficient violacein production from glycerol. Biochem. Eng. J. 2011, 57:55-62. 10.1016/j.bej.2011.08.008.
-
(2011)
Biochem. Eng. J.
, vol.57
, pp. 55-62
-
-
Yang, C.1
Jiang, P.2
Xiao, S.3
Zhang, C.4
Lou, K.5
Xing, X.-H.6
-
67
-
-
84879164975
-
Synthetic RNA devices to expedite the evolution of metabolite-producing microbes
-
Yang J., Seo S.W., Jang S., Shin S.-I., Lim C.H., Roh T.-Y., Jung G.Y. Synthetic RNA devices to expedite the evolution of metabolite-producing microbes. Nat. Commun. 2013, 4:1413. 10.1038/ncomms2404.
-
(2013)
Nat. Commun.
, vol.4
, pp. 1413
-
-
Yang, J.1
Seo, S.W.2
Jang, S.3
Shin, S.-I.4
Lim, C.H.5
Roh, T.-Y.6
Jung, G.Y.7
-
68
-
-
0026006958
-
Physiological studies of tryptophan transport and tryptophanase operon induction in Escherichia coli
-
Yanofsky C., Horn V., Gollnick P. Physiological studies of tryptophan transport and tryptophanase operon induction in Escherichia coli. J. Bacteriol. 1991, 173:6009-6017.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 6009-6017
-
-
Yanofsky, C.1
Horn, V.2
Gollnick, P.3
-
69
-
-
67749130626
-
Characteristics of low molecular weight heparin production by an ultrafiltration membrane bioreactor using maltose binding protein fused heparinase I
-
Ye F., Kuang Y., Chen S., Zhang C., Chen Y., Xing X.-H. Characteristics of low molecular weight heparin production by an ultrafiltration membrane bioreactor using maltose binding protein fused heparinase I. Biochem. Eng. J. 2009, 46:193-198. 10.1016/j.bej.2009.05.007.
-
(2009)
Biochem. Eng. J.
, vol.46
, pp. 193-198
-
-
Ye, F.1
Kuang, Y.2
Chen, S.3
Zhang, C.4
Chen, Y.5
Xing, X.-H.6
-
70
-
-
29544444196
-
Chromosomal promoter replacement of the isoprenoid pathway for enhancing carotenoid production in E. coli
-
Yuan L.Z., Rouvière P.E., Larossa R.A., Suh W. Chromosomal promoter replacement of the isoprenoid pathway for enhancing carotenoid production in E. coli. Metab. Eng. 2006, 8:79-90. 10.1016/j.ymben.2005.08.005.
-
(2006)
Metab. Eng.
, vol.8
, pp. 79-90
-
-
Yuan, L.Z.1
Rouvière, P.E.2
Larossa, R.A.3
Suh, W.4
-
71
-
-
84877292750
-
Spanning high-dimensional expression space using ribosome-binding site combinatorics
-
Zelcbuch L., Antonovsky N., Bar-Even A., Levin-Karp A., Barenholz U., Dayagi M., Liebermeister W., Flamholz A., Noor E., Amram S., Brandis A., Bareia T., Yofe I., Jubran H., Milo R. Spanning high-dimensional expression space using ribosome-binding site combinatorics. Nucleic Acids Res. 2013, 41:e98. 10.1093/nar/gkt151.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. e98
-
-
Zelcbuch, L.1
Antonovsky, N.2
Bar-Even, A.3
Levin-Karp, A.4
Barenholz, U.5
Dayagi, M.6
Liebermeister, W.7
Flamholz, A.8
Noor, E.9
Amram, S.10
Brandis, A.11
Bareia, T.12
Yofe, I.13
Jubran, H.14
Milo, R.15
-
72
-
-
84869039746
-
Enhancing fatty acid production by the expression of the regulatory transcription factor FadR
-
Zhang F., Ouellet M., Batth T.S., Adams P.D., Petzold C.J., Mukhopadhyay A., Keasling J.D. Enhancing fatty acid production by the expression of the regulatory transcription factor FadR. Metab. Eng. 2012, 14:653-660. 10.1016/j.ymben.2012.08.009.
-
(2012)
Metab. Eng.
, vol.14
, pp. 653-660
-
-
Zhang, F.1
Ouellet, M.2
Batth, T.S.3
Adams, P.D.4
Petzold, C.J.5
Mukhopadhyay, A.6
Keasling, J.D.7
-
74
-
-
84875670791
-
Engineering central metabolic modules of Escherichia coli for improving β-carotene production
-
Zhao J., Li Q., Sun T., Zhu X., Xu H., Tang J., Zhang X., Ma Y. Engineering central metabolic modules of Escherichia coli for improving β-carotene production. Metab. Eng. 2013, 17:42-50. 10.1016/j.ymben.2013.02.002.
-
(2013)
Metab. Eng.
, vol.17
, pp. 42-50
-
-
Zhao, J.1
Li, Q.2
Sun, T.3
Zhu, X.4
Xu, H.5
Tang, J.6
Zhang, X.7
Ma, Y.8
-
75
-
-
84855188845
-
Development of L-tryptophan production strains by defined genetic modification in Escherichia coli
-
Zhao Z.-J., Zou C., Zhu Y.-X., Dai J., Chen S., Wu D., Wu J., Chen J. Development of L-tryptophan production strains by defined genetic modification in Escherichia coli. J. Ind. Microbiol. Biotechnol. 2011, 38:1921-1929. 10.1007/s10295-011-0978-8.
-
(2011)
J. Ind. Microbiol. Biotechnol.
, vol.38
, pp. 1921-1929
-
-
Zhao, Z.-J.1
Zou, C.2
Zhu, Y.-X.3
Dai, J.4
Chen, S.5
Wu, D.6
Wu, J.7
Chen, J.8
|