-
1
-
-
17844374314
-
A synthetic multicellular system for programmed pattern formation
-
Basu, S., Gerchman, Y., Collins, C.H., Arnold, F.H. & Weiss, R. A synthetic multicellular system for programmed pattern formation. Nature 434, 1130-1134 (2005).
-
(2005)
Nature
, vol.434
, pp. 1130-1134
-
-
Basu, S.1
Gerchman, Y.2
Collins, C.H.3
Arnold, F.H.4
Weiss, R.5
-
2
-
-
57049159362
-
A fast, robust and tunable synthetic gene oscillator
-
Stricker, J. et al. A fast, robust and tunable synthetic gene oscillator. Nature 456, 516-519 (2008).
-
(2008)
Nature
, vol.456
, pp. 516-519
-
-
Stricker, J.1
-
3
-
-
66349125024
-
Synthetic gene networks that count
-
Friedland, A.E. et al. Synthetic gene networks that count. Science 324, 1199-1202 (2009).
-
(2009)
Science
, vol.324
, pp. 1199-1202
-
-
Friedland, A.E.1
-
4
-
-
66149172363
-
Diversity-based model-guided construction of synthetic gene networks with predicted functions
-
Ellis, T., Wang, X. & Collins, J.J. Diversity-based, model-guided construction of synthetic gene networks with predicted functions. Nat. Biotechnol. 27, 465-471 (2009).
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 465-471
-
-
Ellis, T.1
Wang, X.2
Collins, J.J.3
-
5
-
-
0037168510
-
Directed evolution of a genetic circuit
-
Yokobayashi, Y., Weiss, R. & Arnold, F.H. Directed evolution of a genetic circuit. Proc. Natl. Acad. Sci. USA 99, 16587-16591 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 16587-16591
-
-
Yokobayashi, Y.1
Weiss, R.2
Arnold, F.H.3
-
6
-
-
67549145283
-
A synthetic genetic edge detection program
-
Tabor, J.J. et al. A synthetic genetic edge detection program. Cell 137, 1272-1281 (2009).
-
(2009)
Cell
, vol.137
, pp. 1272-1281
-
-
Tabor, J.J.1
-
7
-
-
34547916832
-
Environmental signal integration by a modular and gate
-
Anderson, J.C., Voigt, C.A. & Arkin, A.P. Environmental signal integration by a modular AND gate. Mol. Syst. Biol. 3, 133 (2007).
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 133
-
-
Anderson, J.C.1
Voigt, C.A.2
Arkin, A.P.3
-
8
-
-
68449088806
-
Synthetic protein scaffolds provide modular control over metabolic fux
-
Dueber, J.E. et al. Synthetic protein scaffolds provide modular control over metabolic fux. Nat. Biotechnol. 27, 753-759 (2009).
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 753-759
-
-
Dueber, J.E.1
-
9
-
-
55549116661
-
Optimization of the mevalonate-based isoprenoid biosynthetic pathway in Escherichia coli for production of the anti-malarial drug precursor amorpha-4,11-diene
-
Anthony, J.R. et al. Optimization of the mevalonate-based isoprenoid biosynthetic pathway in Escherichia coli for production of the anti-malarial drug precursor amorpha-4,11-diene. Metab. Eng. 11, 13-19 (2008).
-
(2008)
Metab. Eng.
, vol.11
, pp. 13-19
-
-
Anthony, J.R.1
-
10
-
-
38049001166
-
Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels
-
Atsumi, S., Hanai, T. & Liao, J.C. Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels. Nature 451, 86-89 (2008).
-
(2008)
Nature
, vol.451
, pp. 86-89
-
-
Atsumi, S.1
Hanai, T.2
Liao, J.C.3
-
11
-
-
49949088247
-
Production of benzylisoquinoline alkaloids in Saccharomyces cerevisiae
-
Hawkins, K.M. & Smolke, CD. Production of benzylisoquinoline alkaloids in Saccharomyces cerevisiae. Nat. Chem. Biol. 4, 564-573 (2008).
-
(2008)
Nat. Chem. Biol.
, vol.4
, pp. 564-573
-
-
Hawkins, K.M.1
Smolke, C.D.2
-
12
-
-
36849002434
-
Systems metabolic engineering of Escherichia coli for L-threonine production
-
Lee, K.H., Park, J.H., Kim, T.Y., Kim, H.U. & Lee, S.Y. Systems metabolic engineering of Escherichia coli for L-threonine production. Mol. Syst. Biol. 3, 149 (2007).
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 149
-
-
Lee, K.H.1
Park, J.H.2
Kim, T.Y.3
Kim, H.U.4
Lee, S.Y.5
-
13
-
-
39849084210
-
Combinatorial pathway analysis for improved L-tyrosine production in Escherichia coli: Identifcation of enzymatic bottlenecks by systematic gene overexpression
-
Lutke-Eversloh, T. & Stephanopoulos, G. Combinatorial pathway analysis for improved L-tyrosine production in Escherichia coli: identifcation of enzymatic bottlenecks by systematic gene overexpression. Metab. Eng. 10, 69-77 (2008).
-
(2008)
Metab. Eng.
, vol.10
, pp. 69-77
-
-
Lutke-Eversloh, T.1
Stephanopoulos, G.2
-
14
-
-
59149092285
-
Gene synthesis demystifed
-
Czar, M.J., Anderson, J.C, Bader, J.S. & Peccoud, J. Gene synthesis demystifed. Trends Biotechnol. 27, 63-72 (2009).
-
(2009)
Trends Biotechnol.
, vol.27
, pp. 63-72
-
-
Czar, M.J.1
Anderson, J.C.2
Bader, J.S.3
Peccoud, J.4
-
15
-
-
39449112551
-
Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome
-
Gibson, D.G. et al. Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome. Science 319, 1215-1220 (2008).
-
(2008)
Science
, vol.319
, pp. 1215-1220
-
-
Gibson, D.G.1
-
16
-
-
3042741121
-
Engineered riboregulators enable post-transcriptional control of gene expression
-
Isaacs, F.J. et al. Engineered riboregulators enable post-transcriptional control of gene expression. Nat. Biotechnol. 22, 841-847 (2004).
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 841-847
-
-
Isaacs, F.J.1
-
17
-
-
0032981770
-
Library of synthetic 5'secondary structures to manipulate mRNA stability in Escherichia coli
-
Carrier, T.A. & Keasling, J.D. Library of synthetic 5'secondary structures to manipulate mRNA stability in Escherichia coli. Biotechnol. Prog. 15, 58-64 (1999).
-
(1999)
Biotechnol. Prog.
, vol.15
, pp. 58-64
-
-
Carrier, T.A.1
Keasling, J.D.2
-
18
-
-
33747078696
-
Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes
-
Pfeger, B.F., Pitera, D.J., Smolke, CD. & Keasling, J.D. Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes. Nat. Biotechnol. 24, 1027-1032 (2006).
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 1027-1032
-
-
Pfeger, B.F.1
Pitera, D.J.2
Smolke, C.D.3
Keasling, J.D.4
-
19
-
-
47249126414
-
Computational design of orthogonal ribosomes
-
Chubiz, L.M. & Rao, C.V. Computational design of orthogonal ribosomes. Nucleic Acids Res. 36, 4038-4046 (2008).
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 4038-4046
-
-
Chubiz, L.M.1
Rao, C.V.2
-
21
-
-
0026544545
-
The infuence of ribosome-binding-site elements on translational effciency in Bacillus subtilis and Escherichia coli in vivo
-
Vellanoweth, R.L. & Rabinowitz, J.C. The infuence of ribosome-binding-site elements on translational effciency in Bacillus subtilis and Escherichia coli in vivo. Mol. Microbiol. 6, 1105-1114 (1992).
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 1105-1114
-
-
Vellanoweth, R.L.1
Rabinowitz, J.C.2
-
22
-
-
0032552882
-
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
-
Xia, T. et al. Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry 37, 14719-14735 (1998).
-
(1998)
Biochemistry
, vol.37
, pp. 14719-14735
-
-
Xia, T.1
-
23
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Mathews, D.H., Sabina, J., Zuker, M. & Turner, D.H. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288, 911-940 (1999).
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
24
-
-
0033607261
-
Thermodynamics of single mismatches in RNA duplexes
-
Kierzek, R., Burkard, M.E. & Turner, D.H. Thermodynamics of single mismatches in RNA duplexes. Biochemistry 38, 14214-14223 (1999).
-
(1999)
Biochemistry
, vol.38
, pp. 14214-14223
-
-
Kierzek, R.1
Burkard, M.E.2
Turner, D.H.3
-
25
-
-
55249104125
-
Thermodynamic analysis of 5' and 3' single-and 3' double-nucleotide overhangs neighboring wobble terminal base pairs
-
Miller, S., Jones, L.E., Giovannitti, K., Piper, D. & Serra, M.J. Thermodynamic analysis of 5' and 3' single-and 3' double-nucleotide overhangs neighboring wobble terminal base pairs. Nucleic Acids Res. 36, 5652-5659 (2008).
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 5652-5659
-
-
Miller, S.1
Jones, L.E.2
Giovannitti, K.3
Piper, D.4
Serra, M.J.5
-
26
-
-
41849129277
-
Thermodynamic characterization of the complete set of sequence symmetric tandem mismatches in RNA and an improved model for predicting the free energy contribution of sequence asymmetric tandem mismatches
-
Christiansen, M.E. & Znosko, B.M. Thermodynamic characterization of the complete set of sequence symmetric tandem mismatches in RNA and an improved model for predicting the free energy contribution of sequence asymmetric tandem mismatches. Biochemistry 47, 4329-4336 (2008).
-
(2008)
Biochemistry
, vol.47
, pp. 4329-4336
-
-
Christiansen, M.E.1
Znosko, B.M.2
-
27
-
-
14844340954
-
Initiation of protein synthesis in bacteria
-
Laursen, B.S., Sorensen, H.P., Mortensen, K.K. & Sperling-Petersen, H.U. Initiation of protein synthesis in bacteria. Microbiol. Mol. Biol. Rev. 69, 101-123 (2005).
-
(2005)
Microbiol. Mol. Biol. Rev.
, vol.69
, pp. 101-123
-
-
Laursen, B.S.1
Sorensen, H.P.2
Mortensen, K.K.3
Sperling-Petersen, H.U.4
-
28
-
-
33645965566
-
Unfolding of mRNA secondary structure by the bacterial translation initiation complex
-
Studer, S.M. & Joseph, S. Unfolding of mRNA secondary structure by the bacterial translation initiation complex. Mol. Cell 22, 105-115 (2006).
-
(2006)
Mol. Cell
, vol.22
, pp. 105-115
-
-
Studer, S.M.1
Joseph, S.2
-
29
-
-
0028584414
-
Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAs
-
Chen, H., Bjerknes, M., Kumar, R. & Jay, E. Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAs. Nucleic Acids Res. 22, 4953-4957 (1994).
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4953-4957
-
-
Chen, H.1
Bjerknes, M.2
Kumar, R.3
Jay, E.4
-
30
-
-
64849114915
-
Coding-sequence determinants of gene expression in Escherichia coli
-
Kudla, G., Murray, A.W., Tollervey, D. & Plotkin, J.B. Coding-sequence determinants of gene expression in Escherichia coli. Science 324, 255-258 (2009).
-
(2009)
Science
, vol.324
, pp. 255-258
-
-
Kudla, G.1
Murray, A.W.2
Tollervey, D.3
Plotkin, J.B.4
-
31
-
-
0042166100
-
Translational standby sites: How ribosomes may deal with the rapid folding kinetics of mRNA
-
de Smit, M.H. & van Duin, J. Translational standby sites: how ribosomes may deal with the rapid folding kinetics of mRNA. J. Mol. Biol. 331, 737-743 (2003).
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 737-743
-
-
De Smit, M.H.1
Van Duin, J.2
-
32
-
-
33847609597
-
Thermodynamic analysis of interacting nucleic acid strands
-
Dirks, R.M., Bois, J.S., Schaeffer, J.M., Winfree, E. & Pierce, N.A. Thermodynamic Analysis of Interacting Nucleic Acid Strands. SIAM Rev. 49, 65-88 (2007).
-
(2007)
SIAM Rev.
, vol.49
, pp. 65-88
-
-
Dirks, R.M.1
Bois, J.S.2
Schaeffer, J.M.3
Winfree, E.4
Pierce, N.A.5
-
33
-
-
0035834062
-
Visualization of protein S1 within the 30S ribosomal subunit and its interaction with messenger RNA
-
Sengupta, J., Agrawal, R.K. & Frank, J. Visualization of protein S1 within the 30S ribosomal subunit and its interaction with messenger RNA. Proc. Natl. Acad. Sci. USA 98, 11991-11996 (2001).
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11991-11996
-
-
Sengupta, J.1
Agrawal, R.K.2
Frank, J.3
|