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Volumn 91, Issue 2, 2015, Pages 1-18

Archaeal community diversity and abundance changes along a natural salinity gradient in estuarine sediments

Author keywords

Archaea; Estuarine sediment; Methanogens; Pyrosequencing; QPCR; Salinity gradient

Indexed keywords

ABUNDANCE; ENVIRONMENTAL GRADIENT; ESTUARINE SEDIMENT; EUKARYOTE; METHANOGENIC BACTERIUM; PHYLOGENETICS; POLYMERASE CHAIN REACTION; PROKARYOTE; SALINITY; SPATIAL DISTRIBUTION; SPECIES DIVERSITY; SPECIES OCCURRENCE;

EID: 84944170892     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1093/femsec/fiu025     Document Type: Article
Times cited : (83)

References (112)
  • 1
    • 0035038976 scopus 로고    scopus 로고
    • Crenarchaeota and Euryarchaeota in temperate estuarine sediments
    • Abreu C, Jurgens G, De Marco P, et al. Crenarchaeota and Euryarchaeota in temperate estuarine sediments. J Appl Microbiol 2001;90:713-8.
    • (2001) J Appl Microbiol , vol.90 , pp. 713-718
    • Abreu, C.1    Jurgens, G.2    De Marco, P.3
  • 2
    • 66649111373 scopus 로고    scopus 로고
    • Sources, turnover and bioavailability of dissolved organic nitrogen (DON) in the Colne estuary, UK
    • Agedah EC, Binalaiyifa HE, Ball AS, et al. Sources, turnover and bioavailability of dissolved organic nitrogen (DON) in the Colne estuary, UK. Mar Ecol-Progr Ser 2009;382:23-33.
    • (2009) Mar Ecol-Progr Ser , vol.382 , pp. 23-33
    • Agedah, E.C.1    Binalaiyifa, H.E.2    Ball, A.S.3
  • 3
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul SF, Gish W, MillerW, et al. Basic local alignment search tool. J Mol Biol 1990;215:403-10.
    • (1990) J Mol Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3
  • 4
    • 20444482930 scopus 로고    scopus 로고
    • Investigation of the methanogen population structure and activity in a brackish lake sediment
    • Banning N, Brock F, Fry JC, et al. Investigation of the methanogen population structure and activity in a brackish lake sediment. Environ Microbiol 2005;7:947-60.
    • (2005) Environ Microbiol , vol.7 , pp. 947-960
    • Banning, N.1    Brock, F.2    Fry, J.C.3
  • 5
    • 77953138654 scopus 로고    scopus 로고
    • Estuarine nitrifiers: new players, patterns and processes
    • Bernhard AE, Bollmann A. Estuarine nitrifiers: new players, patterns and processes. Estuar Coast Shelf S 2010;88:1-11.
    • (2010) Estuar Coast Shelf S , vol.88 , pp. 1-11
    • Bernhard, A.E.1    Bollmann, A.2
  • 6
    • 84859913716 scopus 로고    scopus 로고
    • Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments
    • Biddle JF, Cardman Z, Mendlovitz H, et al. Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments. ISME J 2011;6:1018-31.
    • (2011) ISME J , vol.6 , pp. 1018-1031
    • Biddle, J.F.1    Cardman, Z.2    Mendlovitz, H.3
  • 7
    • 33644821142 scopus 로고    scopus 로고
    • Heterotrophic Archaea dominate sedimentary subsurface ecosystems offPeru
    • Biddle JF, Lipp JS, Lever MA, et al. Heterotrophic Archaea dominate sedimentary subsurface ecosystems offPeru. P Natl Acad Sci USA 2006;103:3846-51.
    • (2006) P Natl Acad Sci USA , vol.103 , pp. 3846-3851
    • Biddle, J.F.1    Lipp, J.S.2    Lever, M.A.3
  • 8
    • 84890110026 scopus 로고    scopus 로고
    • Phylogenomic data support a seventh order of methylotrophic methanogens and provide insights into the evolution of methanogenesis
    • Borrel G, O'Toole PW, Harris HMB, et al. Phylogenomic data support a seventh order of methylotrophic methanogens and provide insights into the evolution of methanogenesis. Genome Biol Evol 2013;5:1769-80.
    • (2013) Genome Biol Evol , vol.5 , pp. 1769-1780
    • Borrel, G.1    O'Toole, P.W.2    Harris, H.M.B.3
  • 9
    • 84857922921 scopus 로고    scopus 로고
    • Environmental factors determining ammonia-oxidizing organism distribution and diversity in marine environments
    • Bouskill NJ, Eveillard D, Chien D, et al. Environmental factors determining ammonia-oxidizing organism distribution and diversity in marine environments. Environ Microbiol 2011;14:714-29.
    • (2011) Environ Microbiol , vol.14 , pp. 714-729
    • Bouskill, N.J.1    Eveillard, D.2    Chien, D.3
  • 10
    • 84860353306 scopus 로고    scopus 로고
    • Fast, accurate errorcorrection of amplicon pyrosequences using Acacia
    • Bragg L, Stone G, Imelfort M, et al. Fast, accurate errorcorrection of amplicon pyrosequences using Acacia. Nat Methods 2012;9:425-6.
    • (2012) Nat Methods , vol.9 , pp. 425-426
    • Bragg, L.1    Stone, G.2    Imelfort, M.3
  • 11
    • 33746156423 scopus 로고    scopus 로고
    • Isolation of a novel acidiphilic methanogen from an acidic peat bog
    • Bräuer SL, Cadillo-Quiroz H, Yashiro E, et al. Isolation of a novel acidiphilic methanogen from an acidic peat bog. Nature 2006;442:192-4.
    • (2006) Nature , vol.442 , pp. 192-194
    • Bräuer, S.L.1    Cadillo-Quiroz, H.2    Yashiro, E.3
  • 12
    • 39149118031 scopus 로고    scopus 로고
    • Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota
    • Brochier-Armanet C, Boussau B, Gribaldo S, et al. Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat Rev Microbiol 2008;6:245-52.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 245-252
    • Brochier-Armanet, C.1    Boussau, B.2    Gribaldo, S.3
  • 13
    • 68949132897 scopus 로고    scopus 로고
    • Towards a consistent classification scheme for geochemical environments, or why we wish the term 'suboxic' would go away
    • Canfield DE, Thamdrup B. Towards a consistent classification scheme for geochemical environments, or why we wish the term 'suboxic' would go away. Geobiology 2009;7:385-92.
    • (2009) Geobiology , vol.7 , pp. 385-392
    • Canfield, D.E.1    Thamdrup, B.2
  • 14
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010;7:335-6.
    • (2010) Nat Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1    Kuczynski, J.2    Stombaugh, J.3
  • 15
    • 84864349619 scopus 로고    scopus 로고
    • Genotypic distribution of a specialist model microorganism, Methanosaeta, along an estuarine gradient: does metabolic restriction limit niche differentiation potential?
    • Carbonero F, Oakley BB, Hawkins RJ, et al. Genotypic distribution of a specialist model microorganism, Methanosaeta, along an estuarine gradient: does metabolic restriction limit niche differentiation potential? Microb Ecol 2012;63:856-64.
    • (2012) Microb Ecol , vol.63 , pp. 856-864
    • Carbonero, F.1    Oakley, B.B.2    Hawkins, R.J.3
  • 17
    • 78650295170 scopus 로고    scopus 로고
    • Archaea-timeline of the third domain
    • Cavicchioli R. Archaea-timeline of the third domain. Nat Rev Microbiol 2011;9:51-61.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 51-61
    • Cavicchioli, R.1
  • 18
    • 84901838088 scopus 로고    scopus 로고
    • Investigation of the methanogenrelated archaeal population structure in shallow sediments of the Pearl River estuary, Southern China
    • Chen J, Wang F, Zheng Y, et al. Investigation of the methanogenrelated archaeal population structure in shallow sediments of the Pearl River estuary, Southern China. J Basic Microb 2014;54:482-90.
    • (2014) J Basic Microb , vol.54 , pp. 482-490
    • Chen, J.1    Wang, F.2    Zheng, Y.3
  • 19
    • 38949155147 scopus 로고    scopus 로고
    • Soil type links microbial colonization of rice roots to methane emission
    • Conrad R, Klose M, Noll M, et al. Soil type links microbial colonization of rice roots to methane emission. Glob Change Biol 2008;14:657-69.
    • (2008) Glob Change Biol , vol.14 , pp. 657-669
    • Conrad, R.1    Klose, M.2    Noll, M.3
  • 20
    • 1642376424 scopus 로고    scopus 로고
    • Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time
    • Crump BC, Hopkinson CS, Sogin ML, et al. Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time. Appl Environ Microb 2004;70:1494-505.
    • (2004) Appl Environ Microb , vol.70 , pp. 1494-1505
    • Crump, B.C.1    Hopkinson, C.S.2    Sogin, M.L.3
  • 21
    • 51149114568 scopus 로고    scopus 로고
    • Diversity and spatial distribution of sediment ammonia-oxidizing Crenarchaeota in response to estuarine and environmental gradients in the Changjiang Estuary and East China Sea
    • Dang H, Zhang X, Sun J, et al. Diversity and spatial distribution of sediment ammonia-oxidizing Crenarchaeota in response to estuarine and environmental gradients in the Changjiang Estuary and East China Sea. Microbiology 2008;154:2084-95.
    • (2008) Microbiology , vol.154 , pp. 2084-2095
    • Dang, H.1    Zhang, X.2    Sun, J.3
  • 23
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong EF. Archaea in coastal marine environments. P Natl Acad Sci USA 1992;89:5685-9.
    • (1992) P Natl Acad Sci USA , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 24
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
    • DeSantis TZ, Hugenholtz P, Larsen N, et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microb 2006;72:5069-72.
    • (2006) Appl Environ Microb , vol.72 , pp. 5069-5072
    • DeSantis, T.Z.1    Hugenholtz, P.2    Larsen, N.3
  • 25
    • 0034683593 scopus 로고    scopus 로고
    • Denitrification in sediments of the River Colne estuary, England
    • Dong LF, Thornton DCO, Nedwell DB, et al. Denitrification in sediments of the River Colne estuary, England. Mar Ecol-Progr Ser 2000;203:109-22.
    • (2000) Mar Ecol-Progr Ser , vol.203 , pp. 109-122
    • Dong, L.F.1    Thornton, D.C.O.2    Nedwell, D.B.3
  • 26
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders ofmagnitude faster than BLAST
    • Edgar RC. Search and clustering orders ofmagnitude faster than BLAST. Bioinformatics 2010;26:2460-1.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 27
    • 77957951370 scopus 로고    scopus 로고
    • How to make a living by exhaling methane
    • Ferry JG. How to make a living by exhaling methane. Annu Rev Microbiol 2010;64:453-73.
    • (2010) Annu Rev Microbiol , vol.64 , pp. 453-473
    • Ferry, J.G.1
  • 28
    • 41349089084 scopus 로고    scopus 로고
    • Methanogenesis in marine sediments
    • Ferry JG, Lessner DJ. Methanogenesis in marine sediments. Ann NY Acad Sci 2008;1125:147-57.
    • (2008) Ann NY Acad Sci , vol.1125 , pp. 147-157
    • Ferry, J.G.1    Lessner, D.J.2
  • 29
    • 26844541457 scopus 로고    scopus 로고
    • Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
    • Francis CA, Roberts KJ, Beman JM, et al. Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. P Natl Acad Sci USA 2005;104:14683-8.
    • (2005) P Natl Acad Sci USA , vol.104 , pp. 14683-14688
    • Francis, C.A.1    Roberts, K.J.2    Beman, J.M.3
  • 30
    • 33644841315 scopus 로고    scopus 로고
    • Changes in the community structure and activity of betaproteobacterial ammonia-oxidizing sediment bacteria along a freshwater-marine gradient
    • Freitag TE, Chang L, Prosser JI. Changes in the community structure and activity of betaproteobacterial ammonia-oxidizing sediment bacteria along a freshwater-marine gradient. Environ Microbiol 2006;2006:684-96.
    • (2006) Environ Microbiol , vol.2006 , pp. 684-696
    • Freitag, T.E.1    Chang, L.2    Prosser, J.I.3
  • 31
    • 53949101331 scopus 로고    scopus 로고
    • Prokaryotic biodiversity and activity in the deep subseafloor biosphere
    • Fry JC, Parkes RJ, Cragg BA, et al. Prokaryotic biodiversity and activity in the deep subseafloor biosphere. FEMS Microbiol Ecol 2008;66:181-96.
    • (2008) FEMS Microbiol Ecol , vol.66 , pp. 181-196
    • Fry, J.C.1    Parkes, R.J.2    Cragg, B.A.3
  • 32
    • 0036890052 scopus 로고    scopus 로고
    • Depth related diversity of methanogen Archaea in Finnish oligotrophic fen
    • Galand PE, Saarnio S, Fritze H, et al. Depth related diversity of methanogen Archaea in Finnish oligotrophic fen. FEMS Microbiol Ecol 2002;42:441-9.
    • (2002) FEMS Microbiol Ecol , vol.42 , pp. 441-449
    • Galand, P.E.1    Saarnio, S.2    Fritze, H.3
  • 33
    • 2542508293 scopus 로고    scopus 로고
    • Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval
    • Grosskopf R, Janssen PH, Liesack W. Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval. Appl Environ Microb 1998;64:960-9.
    • (1998) Appl Environ Microb , vol.64 , pp. 960-969
    • Grosskopf, R.1    Janssen, P.H.2    Liesack, W.3
  • 34
    • 82355180998 scopus 로고    scopus 로고
    • The archaeal 'TACK' superphylum and the origin of eukaryotes
    • Guy L, Ettema TJG. The archaeal 'TACK' superphylum and the origin of eukaryotes. Trends Microbiol 2011;19:580-7.
    • (2011) Trends Microbiol , vol.19 , pp. 580-587
    • Guy, L.1    Ettema, T.J.G.2
  • 35
    • 0030032633 scopus 로고    scopus 로고
    • Isolation and identification of methanogen-specific DNA from blanket bog peat by PCR amplification and sequence analysis
    • Hales B, Edwards C, Ritchie D, et al. Isolation and identification of methanogen-specific DNA from blanket bog peat by PCR amplification and sequence analysis. Appl EnvironMicrob 1996;62:668-75.
    • (1996) Appl EnvironMicrob , vol.62 , pp. 668-675
    • Hales, B.1    Edwards, C.2    Ritchie, D.3
  • 36
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis programforWindows 95/98/NT
    • Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis programforWindows 95/98/NT. Nucl Acid S 1999;41:95-8.
    • (1999) Nucl Acid S , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 37
    • 34748886657 scopus 로고    scopus 로고
    • PAST: paleontological statistics software package for education and data analysis
    • Hammer Ø, Harper DAT, Ryan PD. PAST: paleontological statistics software package for education and data analysis. Palaeontol Electron 2001;4:9.
    • (2001) Palaeontol Electron , vol.4 , pp. 9
    • Hammer, Ø.1    Harper, D.A.T.2    Ryan, P.D.3
  • 38
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: a program to detect chimeric sequences inmultiple sequence alignments
    • Huber T, Faulkner G, Hugenholtz P. Bellerophon: a program to detect chimeric sequences inmultiple sequence alignments. Bioinformatics 2004;20:2317-9.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 39
    • 77955251092 scopus 로고    scopus 로고
    • Ironing out the wrinkles in the rare biosphere through improved OTU clustering
    • Huse SM, Welch DM, Morrison HG, et al. Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 2010;12:1889-98.
    • (2010) Environ Microbiol , vol.12 , pp. 1889-1898
    • Huse, S.M.1    Welch, D.M.2    Morrison, H.G.3
  • 40
    • 33644505436 scopus 로고    scopus 로고
    • Biogeographical distribution and diversity ofmicrobes in methane hydrate bearing deep marine sediments, on the Pacific Ocean Margin
    • Inagaki F, Nunoura T, Nakagawa S, et al. Biogeographical distribution and diversity ofmicrobes in methane hydrate bearing deep marine sediments, on the Pacific Ocean Margin. P Natl Acad Sci USA 2006;103:2815-20.
    • (2006) P Natl Acad Sci USA , vol.103 , pp. 2815-2820
    • Inagaki, F.1    Nunoura, T.2    Nakagawa, S.3
  • 41
    • 33646262107 scopus 로고    scopus 로고
    • Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon
    • Ingalls AE, Shah SR, Hansman RL, et al. Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon. P Natl Acad Sci USA 2006;103:6442-7.
    • (2006) P Natl Acad Sci USA , vol.103 , pp. 6442-6447
    • Ingalls, A.E.1    Shah, S.R.2    Hansman, R.L.3
  • 42
    • 79958220480 scopus 로고    scopus 로고
    • Stratification of archaeal communities in shallow sediments of the Pearl River Estuary, Southern China
    • Jiang L, Zheng Y, Chen J, et al. Stratification of archaeal communities in shallow sediments of the Pearl River Estuary, Southern China. Anton Leeuw 2011;99:739-51.
    • (2011) Anton Leeuw , vol.99 , pp. 739-751
    • Jiang, L.1    Zheng, Y.2    Chen, J.3
  • 43
    • 0033771975 scopus 로고    scopus 로고
    • Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization
    • Jurgens G, Glockner F, Amann R, et al. Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization. FEMS Microbiol Ecol 2000;34:45-56.
    • (2000) FEMS Microbiol Ecol , vol.34 , pp. 45-56
    • Jurgens, G.1    Glockner, F.2    Amann, R.3
  • 44
    • 0035945618 scopus 로고    scopus 로고
    • Archaeal dominance in the mesopelagic zone of the Pacific Ocean
    • Karner MB, DeLong EF, Karl DM. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 2001;409: 507-10.
    • (2001) Nature , vol.409 , pp. 507-510
    • Karner, M.B.1    DeLong, E.F.2    Karl, D.M.3
  • 45
    • 12344309156 scopus 로고    scopus 로고
    • Estimating prokaryotic diversity: When are 16S rDNA libraries large enough?
    • Kemp PF, Aller JY. Estimating prokaryotic diversity: When are 16S rDNA libraries large enough? Limnol Oceanogr-Meth 2004;2:114-25.
    • (2004) Limnol Oceanogr-Meth , vol.2 , pp. 114-125
    • Kemp, P.F.1    Aller, J.Y.2
  • 46
    • 0021171717 scopus 로고
    • Metabolism of trimethylamine, choline, and glycine betaine by sulfate-reducing and methanogenic bacteria in marine sediments
    • King GM. Metabolism of trimethylamine, choline, and glycine betaine by sulfate-reducing and methanogenic bacteria in marine sediments. Appl Environ Microb 1984;48:719-25.
    • (1984) Appl Environ Microb , vol.48 , pp. 719-725
    • King, G.M.1
  • 47
    • 70349559191 scopus 로고    scopus 로고
    • Anaerobic oxidation of methane: progress with an unknown process
    • Knittel K, Boetius A. Anaerobic oxidation of methane: progress with an unknown process. Annu Rev Microbiol 2009;63: 311-34.
    • (2009) Annu Rev Microbiol , vol.63 , pp. 311-334
    • Knittel, K.1    Boetius, A.2
  • 48
    • 25644435673 scopus 로고    scopus 로고
    • Isolation of an autotrophic ammonia-oxidizing marine archaeon
    • Könneke M, Bernhard AE, de la Torre JR, et al. Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 2005;437:543-6.
    • (2005) Nature , vol.437 , pp. 543-546
    • Könneke, M.1    Bernhard, A.E.2    de la Torre, J.R.3
  • 49
    • 84867745042 scopus 로고    scopus 로고
    • Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments
    • Kubo K, Lloyd KG, Biddle JF, et al. Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments. ISME J 2012;6:1949-65.
    • (2012) ISME J , vol.6 , pp. 1949-1965
    • Kubo, K.1    Lloyd, K.G.2    Biddle, J.F.3
  • 50
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt E, Goodfellow M (eds). New York, NY: John Wiley and Sons
    • Lane DJ. 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds). Nucleic Acid Techniques in Bacterial Systematics. New York, NY: John Wiley and Sons, 1991, 115-75.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 51
    • 84937042918 scopus 로고    scopus 로고
    • Environmental controls on intragroup diversity of the uncultured benthic archaea of the Miscellaneous Crenarchaeotal Group lineage naturally enriched in anoxic sediments of the White Oak River estuary (North Carolina, USA)
    • Lazar CS, Biddle JF, Meador TB, et al. Environmental controls on intragroup diversity of the uncultured benthic archaea of the Miscellaneous Crenarchaeotal Group lineage naturally enriched in anoxic sediments of the White Oak River estuary (North Carolina, USA). Environ Microbiol, 2014, DOI: 10.1111/1462-2920.12659.
    • (2014) Environ Microbiol
    • Lazar, C.S.1    Biddle, J.F.2    Meador, T.B.3
  • 52
    • 1642267433 scopus 로고    scopus 로고
    • Molecular diversity of new Thermococcales isolates from a single area of hydrothermal deep-sea vents as revealed by randomly amplified polymorphic DNA fingerprinting and 16S rRNA gene sequence analysis
    • Lepage E, Marguet E, Geslin C, et al. Molecular diversity of new Thermococcales isolates from a single area of hydrothermal deep-sea vents as revealed by randomly amplified polymorphic DNA fingerprinting and 16S rRNA gene sequence analysis. Appl Environ Microb 2004;70:1277-86.
    • (2004) Appl Environ Microb , vol.70 , pp. 1277-1286
    • Lepage, E.1    Marguet, E.2    Geslin, C.3
  • 53
    • 84917677469 scopus 로고    scopus 로고
    • amoA gene abundances and nitrification potential 1 rates suggest that benthic ammoniaoxidizing bacteria (AOB) not archaea (AOA) dominate N cycling in the Colne estuary, UK
    • Li J, Nedwell DB, Beddow J, et al. amoA gene abundances and nitrification potential 1 rates suggest that benthic ammoniaoxidizing bacteria (AOB) not archaea (AOA) dominate N cycling in the Colne estuary, UK. Appl Environ Microb, 2014, DOI: 10.1128/AEM.02654-14.
    • (2014) Appl Environ Microb
    • Li, J.1    Nedwell, D.B.2    Beddow, J.3
  • 54
    • 84875792499 scopus 로고    scopus 로고
    • Stratified active archaeal communities in the sediments of Jiulong River estuary, China
    • Li Q, Wang F, Chen Z, et al. Stratified active archaeal communities in the sediments of Jiulong River estuary, China. Front Microbiol 2012;3:311.
    • (2012) Front Microbiol , vol.3 , pp. 311
    • Li, Q.1    Wang, F.2    Chen, Z.3
  • 55
    • 41349083576 scopus 로고    scopus 로고
    • Metabolic, phylogenetic, and ecological diversity of the methanogenic Archaea
    • Liu Y, Whitman WB. Metabolic, phylogenetic, and ecological diversity of the methanogenic Archaea. Ann NY Acad Sci 2008;1125:171-89.
    • (2008) Ann NY Acad Sci , vol.1125 , pp. 171-189
    • Liu, Y.1    Whitman, W.B.2
  • 56
    • 77649303058 scopus 로고    scopus 로고
    • Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep
    • Lloyd KG, Albert DB, Biddle JF, et al. Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep. PLoS One 2010;5:e8738.
    • (2010) PLoS One , vol.5
    • Lloyd, K.G.1    Albert, D.B.2    Biddle, J.F.3
  • 57
    • 84888229728 scopus 로고    scopus 로고
    • Meta-analysis of quantification methods shows that archaea and bacteria have similar abundances in the subseafloor
    • Lloyd KG, May MK, Kevorkian RT, et al. Meta-analysis of quantification methods shows that archaea and bacteria have similar abundances in the subseafloor. Appl Environ Microb 2013;79:7790-9.
    • (2013) Appl Environ Microb , vol.79 , pp. 7790-7799
    • Lloyd, K.G.1    May, M.K.2    Kevorkian, R.T.3
  • 58
    • 84876291747 scopus 로고    scopus 로고
    • Predominant archaea in marine sediments degrade detrital proteins
    • Lloyd KG, Schreiber L, Petersen DG, et al. Predominant archaea in marine sediments degrade detrital proteins. Nature 2013;496:215-8.
    • (2013) Nature , vol.496 , pp. 215-218
    • Lloyd, K.G.1    Schreiber, L.2    Petersen, D.G.3
  • 59
    • 0028361182 scopus 로고
    • Recovering evolutionary trees under a more realistic model of sequence evolution
    • Lockhart PJ, Steel MA, Hendy MD, et al. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol Biol Evol 1994;11:605-12.
    • (1994) Mol Biol Evol , vol.11 , pp. 605-612
    • Lockhart, P.J.1    Steel, M.A.2    Hendy, M.D.3
  • 60
    • 0036856362 scopus 로고    scopus 로고
    • The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfills
    • Luton PE, Wayne JM, Sharp RJ, et al. The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfills. Microbiology 2002;148:3521-30.
    • (2002) Microbiology , vol.148 , pp. 3521-3530
    • Luton, P.E.1    Wayne, J.M.2    Sharp, R.J.3
  • 61
    • 21144433294 scopus 로고    scopus 로고
    • The Scheldt estuary: a description of a changing ecosystem
    • Meire P, Ysebaert T, Van Damme S, et al. The Scheldt estuary: a description of a changing ecosystem. Hydrobiologia 2005;540:1-11.
    • (2005) Hydrobiologia , vol.540 , pp. 1-11
    • Meire, P.1    Ysebaert, T.2    Van Damme, S.3
  • 62
    • 84894363922 scopus 로고    scopus 로고
    • Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses
    • Meng J, Xu J, Qin D, et al. Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses. ISME J 2014;8:650-9.
    • (2014) ISME J , vol.8 , pp. 650-659
    • Meng, J.1    Xu, J.2    Qin, D.3
  • 63
    • 0030831861 scopus 로고    scopus 로고
    • Phylogenetic diversity of Archaea in sediment samples from a coastal salt marsh
    • Munson MA, Nedwell DB, Embley TM. Phylogenetic diversity of Archaea in sediment samples from a coastal salt marsh. Appl Environ Microb 1997;63:4729-33.
    • (1997) Appl Environ Microb , vol.63 , pp. 4729-4733
    • Munson, M.A.1    Nedwell, D.B.2    Embley, T.M.3
  • 64
    • 0001868073 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis (DGGE) inmicrobial ecology
    • Akkermans ADL, Van Elsas JD, De Bruijn FJ, et al. (eds). Dordrecht: Kluwer Academic Publishers
    • Muyzer G, BrinkhoffT, Nübel U, Denaturing gradient gel electrophoresis (DGGE) inmicrobial ecology. In: Akkermans ADL, Van Elsas JD, De Bruijn FJ, et al. (eds). Molecular Microbial Ecology Manual. Dordrecht: Kluwer Academic Publishers, 1998, 1-27.
    • (1998) Molecular Microbial Ecology Manual , pp. 1-27
    • Muyzer, G.1    Brinkhoff, T.2    Nübel, U.3
  • 65
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction amplified genes coding for 16S rRNA
    • Muyzer G, DeWaal EC, Uitterlinden AG. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction amplified genes coding for 16S rRNA. Appl Environ Microb 1993;59:695-700.
    • (1993) Appl Environ Microb , vol.59 , pp. 695-700
    • Muyzer, G.1    DeWaal, E.C.2    Uitterlinden, A.G.3
  • 66
    • 12344260911 scopus 로고    scopus 로고
    • Sulphate reduction, methanogenesis and phylogenetics of the sulphate reducing bacterial communities along an estuarine gradient
    • Nedwell DB1, Embley TM, Purdy KJ. Sulphate reduction, methanogenesis and phylogenetics of the sulphate reducing bacterial communities along an estuarine gradient. AquatMicrob Ecol 2004;37:209-17.
    • (2004) AquatMicrob Ecol , vol.37 , pp. 209-217
    • Nedwell, D.B.1    Embley, T.M.2    Purdy, K.J.3
  • 67
    • 67149131585 scopus 로고    scopus 로고
    • Archaeal diversity and the prevalence of Crenarchaeota in salt marsh sediments
    • Nelson KA, Moin NS, Bernhard AE. Archaeal diversity and the prevalence of Crenarchaeota in salt marsh sediments. Appl Environ Microb 2009;75:4211-5.
    • (2009) Appl Environ Microb , vol.75 , pp. 4211-4215
    • Nelson, K.A.1    Moin, N.S.2    Bernhard, A.E.3
  • 68
    • 0036793715 scopus 로고    scopus 로고
    • Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA
    • Nogales B, Timmis KN, Nedwell DB, et al. Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Appl Environ Microb 2002;68:5017-25.
    • (2002) Appl Environ Microb , vol.68 , pp. 5017-5025
    • Nogales, B.1    Timmis, K.N.2    Nedwell, D.B.3
  • 69
    • 84879419045 scopus 로고    scopus 로고
    • Contrasting relationships between biogeochemistry and prokaryotic diversity depth profiles along an estuarine sediment gradient
    • O'Sullivan LA, Sass AM, Webster G, et al. Contrasting relationships between biogeochemistry and prokaryotic diversity depth profiles along an estuarine sediment gradient. FEMS Microbiol Ecol 2013;85:143-57.
    • (2013) FEMS Microbiol Ecol , vol.85 , pp. 143-157
    • O'Sullivan, L.A.1    Sass, A.M.2    Webster, G.3
  • 70
    • 84859911332 scopus 로고    scopus 로고
    • Contrasting patterns of niche partitioning between two anaerobic terminal oxidizers of organic matter
    • Oakley BB, Carbonero F, Dowd SE, et al. Contrasting patterns of niche partitioning between two anaerobic terminal oxidizers of organic matter. ISME J 2012;6:905-14.
    • (2012) ISME J , vol.6 , pp. 905-914
    • Oakley, B.B.1    Carbonero, F.2    Dowd, S.E.3
  • 71
    • 0042853314 scopus 로고    scopus 로고
    • Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR
    • Ochsenreiter T, Selezi D, Quaiser A, et al. Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environ Microbiol 2003;5: 787-97.
    • (2003) Environ Microbiol , vol.5 , pp. 787-797
    • Ochsenreiter, T.1    Selezi, D.2    Quaiser, A.3
  • 72
    • 0019998693 scopus 로고
    • Methane production and simultaneous sulphate reduction in anoxic, salt marsh sediments
    • Oremland RS, Marsh LM, Polcin S. Methane production and simultaneous sulphate reduction in anoxic, salt marsh sediments. Nature 1982;296:143-5.
    • (1982) Nature , vol.296 , pp. 143-145
    • Oremland, R.S.1    Marsh, L.M.2    Polcin, S.3
  • 73
    • 0001314823 scopus 로고
    • Methanogenesis and sulfate reduction: competitive and noncompetitive substrates in estuarine sediments
    • Oremland RS, Polcin S. Methanogenesis and sulfate reduction: competitive and noncompetitive substrates in estuarine sediments. Appl Environ Microb 1982;44:1270-6.
    • (1982) Appl Environ Microb , vol.44 , pp. 1270-1276
    • Oremland, R.S.1    Polcin, S.2
  • 74
    • 34247860839 scopus 로고    scopus 로고
    • Biogeochemistry and biodiversity of methane cycling in subsurface marine sediments (Skagerrak, Denmark)
    • Parkes RJ, Cragg BA, Banning N, et al. Biogeochemistry and biodiversity of methane cycling in subsurface marine sediments (Skagerrak, Denmark). Environ Microbiol 2007;9:1146-61.
    • (2007) Environ Microbiol , vol.9 , pp. 1146-1161
    • Parkes, R.J.1    Cragg, B.A.2    Banning, N.3
  • 75
    • 0347794946 scopus 로고    scopus 로고
    • Recent studies on bacterial populations and processes in subseafloor sediments: a review
    • Parkes RJ, Cragg BA, Wellsbury P. Recent studies on bacterial populations and processes in subseafloor sediments: a review. Hydrogeol J 2000;8:11-28.
    • (2000) Hydrogeol J , vol.8 , pp. 11-28
    • Parkes, R.J.1    Cragg, B.A.2    Wellsbury, P.3
  • 76
    • 84870794077 scopus 로고    scopus 로고
    • "Methanoplasmatales, "Thermoplasmatales-related Archaea in termite guts and other environments, are the seventh order of methanogens
    • Paul K, Nonoh JO, Mikulski L, et al. "Methanoplasmatales, "Thermoplasmatales-related Archaea in termite guts and other environments, are the seventh order of methanogens. Appl Environ Microb 2012;78:8245-53.
    • (2012) Appl Environ Microb , vol.78 , pp. 8245-8253
    • Paul, K.1    Nonoh, J.O.2    Mikulski, L.3
  • 77
    • 84874628087 scopus 로고    scopus 로고
    • Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen
    • Poulsen M, Schwab C, Jensen BB, et al. Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen. Nat Commun 2013;4:1428.
    • (2013) Nat Commun , vol.4 , pp. 1428
    • Poulsen, M.1    Schwab, C.2    Jensen, B.B.3
  • 78
    • 52949113790 scopus 로고    scopus 로고
    • Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment
    • Prosser JI, Nicol GW. Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment. Environ Microbiol 2008;10:2931-41.
    • (2008) Environ Microbiol , vol.10 , pp. 2931-2941
    • Prosser, J.I.1    Nicol, G.W.2
  • 79
    • 0037721420 scopus 로고    scopus 로고
    • Use of 16S rRNAtargeted oligonucleotide probes to investigate function and phylogeny of sulphate-reducing bacteria and methanogenic archaea in a UK estuary
    • Purdy KJ, Munson MA, Embley TM, et al. Use of 16S rRNAtargeted oligonucleotide probes to investigate function and phylogeny of sulphate-reducing bacteria and methanogenic archaea in a UK estuary. FEMS Microbiol Ecol 2003;44: 361-71.
    • (2003) FEMS Microbiol Ecol , vol.44 , pp. 361-371
    • Purdy, K.J.1    Munson, M.A.2    Embley, T.M.3
  • 80
    • 0036188405 scopus 로고    scopus 로고
    • Comparison of the molecular diversity of the methanogenic community at the brackish and marine ends of a UK estuary
    • Purdy KJ, Munson MA, Nedwell DB, et al. Comparison of the molecular diversity of the methanogenic community at the brackish and marine ends of a UK estuary. FEMS Microbiol Ecol 2002;39:17-21.
    • (2002) FEMS Microbiol Ecol , vol.39 , pp. 17-21
    • Purdy, K.J.1    Munson, M.A.2    Nedwell, D.B.3
  • 81
    • 58149456652 scopus 로고    scopus 로고
    • Archaeal methane cycling communities associated with gassy subsurface sediments of Marennes-Oléron Bay (France)
    • Roussel EG, Sauvadet AL, Allard J, et al. Archaeal methane cycling communities associated with gassy subsurface sediments of Marennes-Oléron Bay (France). Geomicrobiol J 2009;26: 31-43.
    • (2009) Geomicrobiol J , vol.26 , pp. 31-43
    • Roussel, E.G.1    Sauvadet, A.L.2    Allard, J.3
  • 82
    • 4644260588 scopus 로고    scopus 로고
    • Ecology and microbial structures of archaeal/bacterial strings-of-pearls communities and archaeal relatives thriving in cold sulfidic springs
    • Rudolph C, Moissl C, Henneberger R, et al. Ecology and microbial structures of archaeal/bacterial strings-of-pearls communities and archaeal relatives thriving in cold sulfidic springs. FEMS Microbiol Ecol 2004;50:1-11.
    • (2004) FEMS Microbiol Ecol , vol.50 , pp. 1-11
    • Rudolph, C.1    Moissl, C.2    Henneberger, R.3
  • 83
    • 42149108694 scopus 로고    scopus 로고
    • Diversity and spatio-temporal distribution of ammonia-oxidizing archaea and bacteria in sediments of the Westerschelde estuary
    • Sahan E, Muyzer G. Diversity and spatio-temporal distribution of ammonia-oxidizing archaea and bacteria in sediments of the Westerschelde estuary. FEMS Microbiol Ecol 2008;64: 175-86.
    • (2008) FEMS Microbiol Ecol , vol.64 , pp. 175-186
    • Sahan, E.1    Muyzer, G.2
  • 86
    • 0020342829 scopus 로고
    • Sulfate reduction and methanogenesis in the sediment of a saltmarsh on the east coast of the United Kingdom
    • Senior E, Lindström EB, Banat IM, et al. Sulfate reduction and methanogenesis in the sediment of a saltmarsh on the east coast of the United Kingdom. Appl Environ Microb 1982;43:987-96.
    • (1982) Appl Environ Microb , vol.43 , pp. 987-996
    • Senior, E.1    Lindström, E.B.2    Banat, I.M.3
  • 87
    • 77952955937 scopus 로고    scopus 로고
    • Phylogenetic diversity of archaeal 16S rRNA and ammonia monooxygenase genes from tropical estuarine sediments on the central west coast of India
    • Singh SK, Verma P, Ramaiah N, et al. Phylogenetic diversity of archaeal 16S rRNA and ammonia monooxygenase genes from tropical estuarine sediments on the central west coast of India. Res Microbiol 2010;161:177-86.
    • (2010) Res Microbiol , vol.161 , pp. 177-186
    • Singh, S.K.1    Verma, P.2    Ramaiah, N.3
  • 88
    • 34249864562 scopus 로고    scopus 로고
    • Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments
    • Smith CJ, Nedwell DB, Dong LF, et al. Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Appl Environ Microb 2007;73:3612-22.
    • (2007) Appl Environ Microb , vol.73 , pp. 3612-3622
    • Smith, C.J.1    Nedwell, D.B.2    Dong, L.F.3
  • 89
    • 33747073504 scopus 로고    scopus 로고
    • Microbial diversity in the deep sea and the underexplored "rare biosphere"
    • Sogin ML, Morrison HG, Huber JA, et al. Microbial diversity in the deep sea and the underexplored "rare biosphere". P Natl Acad Sci USA 2006;103:12115-20.
    • (2006) P Natl Acad Sci USA , vol.103 , pp. 12115-12120
    • Sogin, M.L.1    Morrison, H.G.2    Huber, J.A.3
  • 91
    • 55049121420 scopus 로고    scopus 로고
    • Phylogenetic comparison of the methanogenic communities from an acidic, oligotrohic fen and an anaerobic digester treating municipal wastewater sludge
    • Steinberg LM, Regan JM. Phylogenetic comparison of the methanogenic communities from an acidic, oligotrohic fen and an anaerobic digester treating municipal wastewater sludge. Appl Environ Microb 2008;74:6663-71.
    • (2008) Appl Environ Microb , vol.74 , pp. 6663-6671
    • Steinberg, L.M.1    Regan, J.M.2
  • 92
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, et al. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 2007;24:1596-9.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3
  • 93
    • 0036205605 scopus 로고    scopus 로고
    • Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methantrophic communities
    • Teske A, Hinrichs KU, Edgcomb V, et al. Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methantrophic communities. Appl Environ Microb 2002;68:1994-2007.
    • (2002) Appl Environ Microb , vol.68 , pp. 1994-2007
    • Teske, A.1    Hinrichs, K.U.2    Edgcomb, V.3
  • 94
    • 41149093627 scopus 로고    scopus 로고
    • Uncultured archaea in deep marine subsurface sediments: Have we caught them all?
    • Teske AP, Sørensen KB. Uncultured archaea in deep marine subsurface sediments: Have we caught them all? ISME J 2008;2: 3-18.
    • (2008) ISME J , vol.2 , pp. 3-18
    • Teske, A.P.1    Sørensen, K.B.2
  • 95
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, et al. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997;25:4876-82.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3
  • 96
    • 0037117808 scopus 로고    scopus 로고
    • Factors affecting microphytobenthic biomass, species composition and production in the Colne estuary (UK)
    • Thornton DCO, Dong LF, Underwood GJC, et al. Factors affecting microphytobenthic biomass, species composition and production in the Colne estuary (UK). Aquat Microb Ecol 2002;27:285-300.
    • (2002) Aquat Microb Ecol , vol.27 , pp. 285-300
    • Thornton, D.C.O.1    Dong, L.F.2    Underwood, G.J.C.3
  • 97
    • 79957684288 scopus 로고    scopus 로고
    • Nitrososphaera viennensis, an ammonia oxidizing archaeon fromsoil
    • TournaM, Stieglmeier M, Spang A, et al. Nitrososphaera viennensis, an ammonia oxidizing archaeon fromsoil. P Natl Acad Sci USA 2011;108:8420-5.
    • (2011) P Natl Acad Sci USA , vol.108 , pp. 8420-8425
    • Tourna, M.1    Stieglmeier, M.2    Spang, A.3
  • 98
    • 34547591343 scopus 로고    scopus 로고
    • Primer3Plus, an enhanced web interface to Primer3
    • Untergasser A, Nijveen H, Rao X, et al. Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Res 2007;35: W71-4.
    • (2007) Nucleic Acids Res , vol.35 , pp. W71-W74
    • Untergasser, A.1    Nijveen, H.2    Rao, X.3
  • 99
    • 0032868072 scopus 로고    scopus 로고
    • Population structure and phylogenetic characterization of marine benthic archaea in deep-sea sediments
    • Vetriani C, Jannasch HW, MacGregor BJ, et al. Population structure and phylogenetic characterization of marine benthic archaea in deep-sea sediments. Appl Environ Microb 1999;65:4375-84.
    • (1999) Appl Environ Microb , vol.65 , pp. 4375-4384
    • Vetriani, C.1    Jannasch, H.W.2    MacGregor, B.J.3
  • 100
    • 35148899268 scopus 로고    scopus 로고
    • Archaeal communities in a tropical estuarine ecosystem: Guanabara Bay, Brazil
    • Vieira RP, Clementino MM, Cardoso AM, et al. Archaeal communities in a tropical estuarine ecosystem: Guanabara Bay, Brazil. Microb Ecol 2007;54:460-8.
    • (2007) Microb Ecol , vol.54 , pp. 460-468
    • Vieira, R.P.1    Clementino, M.M.2    Cardoso, A.M.3
  • 101
    • 84876101405 scopus 로고    scopus 로고
    • Bacterial and archaeal community structure in the surface microlayer of high mountain lakes examined under two atmospheric aerosol loading scenarios
    • Vila-Costa M, Barberan A, Auguet JC, et al. Bacterial and archaeal community structure in the surface microlayer of high mountain lakes examined under two atmospheric aerosol loading scenarios. FEMS Microbiol Ecol 2013;84: 387-97.
    • (2013) FEMS Microbiol Ecol , vol.84 , pp. 387-397
    • Vila-Costa, M.1    Barberan, A.2    Auguet, J.C.3
  • 102
    • 84870805163 scopus 로고    scopus 로고
    • Choline and N, N-dimethylethanolamine as direct substrates for methanogens
    • Watkins AJ, Roussel EG, Webster G, et al. Choline and N, N-dimethylethanolamine as direct substrates for methanogens. Appl Environ Microb 2012;78:8298-303.
    • (2012) Appl Environ Microb , vol.78 , pp. 8298-8303
    • Watkins, A.J.1    Roussel, E.G.2    Webster, G.3
  • 103
    • 58149265284 scopus 로고    scopus 로고
    • Subsurface microbiology and biogeochemistry of a deep, cold-water carbonatemound from the Porcupine Seabight (IODP Expedition 307)
    • Webster G, Blazejak A, Cragg BA, et al. Subsurface microbiology and biogeochemistry of a deep, cold-water carbonatemound from the Porcupine Seabight (IODP Expedition 307). Environ Microbiol 2009;11:239-57.
    • (2009) Environ Microbiol , vol.11 , pp. 239-257
    • Webster, G.1    Blazejak, A.2    Cragg, B.A.3
  • 104
    • 0142091782 scopus 로고    scopus 로고
    • Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale
    • Webster G, Newberry CJ, Fry JC, et al. Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale. J Microbiol Meth 2003;55:155-64.
    • (2003) J Microbiol Meth , vol.55 , pp. 155-164
    • Webster, G.1    Newberry, C.J.2    Fry, J.C.3
  • 105
    • 33746716094 scopus 로고    scopus 로고
    • Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin
    • Webster G, Parkes RJ, Cragg BA, et al. Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin. FEMS Microbiol Ecol 2006;58:65-85.
    • (2006) FEMS Microbiol Ecol , vol.58 , pp. 65-85
    • Webster, G.1    Parkes, R.J.2    Cragg, B.A.3
  • 106
    • 77950687902 scopus 로고    scopus 로고
    • Prokaryotic functional diversity in different biogeochemical depth zones in tidal sediments of the Severn estuary, UK, revealed by stable-isotope probing
    • Webster G, Rinna J, Roussel EG, et al. Prokaryotic functional diversity in different biogeochemical depth zones in tidal sediments of the Severn estuary, UK, revealed by stable-isotope probing. FEMS Microbiol Ecol 2010;72:179-97.
    • (2010) FEMS Microbiol Ecol , vol.72 , pp. 179-197
    • Webster, G.1    Rinna, J.2    Roussel, E.G.3
  • 107
    • 79960172211 scopus 로고    scopus 로고
    • Enrichment and cultivation of prokaryotes associated with the sulphate-methane transition zone of diffusion-controlled sediments of Aarhus Bay, Denmark, under heterotrophic conditions
    • Webster G, Sass H, Cragg BA, et al. Enrichment and cultivation of prokaryotes associated with the sulphate-methane transition zone of diffusion-controlled sediments of Aarhus Bay, Denmark, under heterotrophic conditions. FEMS Microbiol Ecol 2011;77:248-63.
    • (2011) FEMS Microbiol Ecol , vol.77 , pp. 248-263
    • Webster, G.1    Sass, H.2    Cragg, B.A.3
  • 108
    • 33847763734 scopus 로고    scopus 로고
    • Methane and sulphate profiles within the subsurface of a tidal flat are reflected by the distribution of sulphate reducing bacteria and methanogenic archaea
    • Wilms R, Sass H, Köpke B, et al. Methane and sulphate profiles within the subsurface of a tidal flat are reflected by the distribution of sulphate reducing bacteria and methanogenic archaea. FEMS Microbiol Ecol 2007;59:611-21.
    • (2007) FEMS Microbiol Ecol , vol.59 , pp. 611-621
    • Wilms, R.1    Sass, H.2    Köpke, B.3
  • 110
    • 84906944377 scopus 로고    scopus 로고
    • Salinity-dominated change in community structure and ecological function of Archaea from the lower Pearl River to coastal South China Sea
    • Xie W, Zhang C, Zhou X, et al. Salinity-dominated change in community structure and ecological function of Archaea from the lower Pearl River to coastal South China Sea. Appl Microbiol Biot 2014;98:7971-82.
    • (2014) Appl Microbiol Biot , vol.98 , pp. 7971-7982
    • Xie, W.1    Zhang, C.2    Zhou, X.3
  • 111
    • 84906272014 scopus 로고    scopus 로고
    • Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
    • Yarza P, Yilmaz P, Pruesse E, et al. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nat Rev Microbiol 2014;12: 635-45.
    • (2014) Nat Rev Microbiol , vol.12 , pp. 635-645
    • Yarza, P.1    Yilmaz, P.2    Pruesse, E.3
  • 112
    • 33846053229 scopus 로고    scopus 로고
    • Phylogenetic diversity of planktonic archaea in the estuarine region of East China Sea
    • Zeng Y, Li H, Jiao N. Phylogenetic diversity of planktonic archaea in the estuarine region of East China Sea. Microbiol Res 2007;162:26-36.
    • (2007) Microbiol Res , vol.162 , pp. 26-36
    • Zeng, Y.1    Li, H.2    Jiao, N.3


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