메뉴 건너뛰기




Volumn 70, Issue 3, 2004, Pages 1494-1505

Microbial Biogeography along an Estuarine Salinity Gradient: Combined Influences of Bacterial Growth and Residence Time

Author keywords

[No Author keywords available]

Indexed keywords

CLONING; CONFORMATIONS; ECOSYSTEMS; ELECTROPHORESIS; MICROBIOLOGY; SALINE WATER; SEDIMENTS;

EID: 1642376424     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.70.3.1494-1505.2004     Document Type: Article
Times cited : (381)

References (47)
  • 2
    • 0030618111 scopus 로고    scopus 로고
    • Survival of allochthonous bacteria in aquatic systems: A biological approach
    • Barcina, I., P. Lebaron, and J. Vives-Rego. 1997. Survival of allochthonous bacteria in aquatic systems: a biological approach. FEMS Microbiol. Ecol. 23:1-9.
    • (1997) FEMS Microbiol. Ecol. , vol.23 , pp. 1-9
    • Barcina, I.1    Lebaron, P.2    Vives-Rego, J.3
  • 3
    • 0028985734 scopus 로고
    • Comparison of free-living and particle-associated bacterial communities in the Chesapeake Bay by stable low-molecular-weight RNA analysis
    • Bidle, K. D., and M. Fletcher. 1995. Comparison of free-living and particle-associated bacterial communities in the Chesapeake Bay by stable low-molecular-weight RNA analysis. Appl. Environ. Microbiol. 61:944-952.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 944-952
    • Bidle, K.D.1    Fletcher, M.2
  • 4
    • 0036222111 scopus 로고    scopus 로고
    • Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries
    • Bouvier, T. C., and P. A. del Giorgio. 2002. Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries. Limnol. Oceanogr. 47:453-470.
    • (2002) Limnol. Oceanogr. , vol.47 , pp. 453-470
    • Bouvier, T.C.1    Del Giorgio, P.A.2
  • 5
    • 0037250698 scopus 로고    scopus 로고
    • Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware estuary
    • Cottrell, M. T., and D. L. Kirchman. 2003. Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware estuary. Limnol. Oceanogr. 48:168-178.
    • (2003) Limnol. Oceanogr. , vol.48 , pp. 168-178
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 6
    • 0032976388 scopus 로고    scopus 로고
    • Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean
    • Crump, B. C., E. V. Armbrust, and J. A. Baross. 1999. Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean. Appl. Environ. Microbiol. 65:3192-3204.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3192-3204
    • Crump, B.C.1    Armbrust, E.V.2    Baross, J.A.3
  • 7
    • 0242668350 scopus 로고    scopus 로고
    • Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source
    • Crump, B. C., G. W. Kling, M. Bahr, and J. E. Hobbie. 2003. Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source. Appl. Environ. Microbiol. 69:2253-2268.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 2253-2268
    • Crump, B.C.1    Kling, G.W.2    Bahr, M.3    Hobbie, J.E.4
  • 9
    • 0028160124 scopus 로고
    • Mixing behavior of dissolved organic-carbon and its potential biological significance in the Pawcatuck River estuary
    • Doering, P. H., C. A. Oviatt, J. H. McKenna, and L. W. Reed. 1994. Mixing behavior of dissolved organic-carbon and its potential biological significance in the Pawcatuck River estuary. Estuaries 17:521-536.
    • (1994) Estuaries , vol.17 , pp. 521-536
    • Doering, P.H.1    Oviatt, C.A.2    McKenna, J.H.3    Reed, L.W.4
  • 10
    • 0036161361 scopus 로고    scopus 로고
    • A transplant experiment to identify the factors controlling bacterial abundance, activity, production, and community composition in a eutrophic canyon-shaped reservoir
    • Gasol, J. M., M. Comerma, J. C. Garcia, J. Armengol, E. O. Casamayor, P. Kojecka, and K. Simek. 2002. A transplant experiment to identify the factors controlling bacterial abundance, activity, production, and community composition in a eutrophic canyon-shaped reservoir. Linmol. Oceanogr. 47:62-77.
    • (2002) Linmol. Oceanogr. , vol.47 , pp. 62-77
    • Gasol, J.M.1    Comerma, M.2    Garcia, J.C.3    Armengol, J.4    Casamayor, E.O.5    Kojecka, P.6    Simek, K.7
  • 11
    • 0000262823 scopus 로고    scopus 로고
    • Evolution, diversity, and molecular ecology of marine prokaryotes
    • D. L. Kirchman (ed.). Wiley-Liss, Inc., New York, N.Y.
    • Giovannoni, S. J., and M. S. Rappe. 2000. Evolution, diversity, and molecular ecology of marine prokaryotes, p. 47-84. In D. L. Kirchman (ed.), Microbial ecology of the oceans. Wiley-Liss, Inc., New York, N.Y.
    • (2000) Microbial Ecology of the Oceans , pp. 47-84
    • Giovannoni, S.J.1    Rappe, M.S.2
  • 12
    • 17644439150 scopus 로고    scopus 로고
    • Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescence in situ hybridization
    • Glockner, F. O., B. M. Fuchs, and R. Amann. 1999. Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl. Environ. Microbiol 65:3721-3726.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3721-3726
    • Glockner, F.O.1    Fuchs, B.M.2    Amann, R.3
  • 13
    • 0017654644 scopus 로고
    • Use of Nuclepore filters for counting bacteria by fluorescence microscopy
    • Hobbie, J. E., R. J. Daley, and S. Jasper. 1977. Use of Nuclepore filters for counting bacteria by fluorescence microscopy. Appl. Environ. Microbiol. 33:1225.
    • (1977) Appl. Environ. Microbiol. , vol.33 , pp. 1225
    • Hobbie, J.E.1    Daley, R.J.2    Jasper, S.3
  • 14
    • 0034737224 scopus 로고    scopus 로고
    • Similarity of particle-associated and free-living bacterial communities in northern San Francisco Bay, California
    • Hollibaugh, J. T., P. S. Wong, and M. C. Murrell. 2000. Similarity of particle-associated and free-living bacterial communities in northern San Francisco Bay, California. Aquat. Microb. Ecol. 21:103-114.
    • (2000) Aquat. Microb. Ecol. , vol.21 , pp. 103-114
    • Hollibaugh, J.T.1    Wong, P.S.2    Murrell, M.C.3
  • 15
    • 0342445436 scopus 로고    scopus 로고
    • Benthic metabolism and nutrient cycling along an estuarine salinity gradient
    • Hopkinson, C. S., A. E. Giblin, J. Tucker, and R. H. Garritt. 1999. Benthic metabolism and nutrient cycling along an estuarine salinity gradient. Estuaries 22:863-881.
    • (1999) Estuaries , vol.22 , pp. 863-881
    • Hopkinson, C.S.1    Giblin, A.E.2    Tucker, J.3    Garritt, R.H.4
  • 16
    • 0033083576 scopus 로고    scopus 로고
    • Tidally induced changes in bacterial growth and viability in the macrotidal Han River estuary, Yellow Sea
    • Hyun, J. H., J. K. Choi, K. H. Chung, E. J. Yang, and M. K. Kim. 1999. Tidally induced changes in bacterial growth and viability in the macrotidal Han River estuary, Yellow Sea. Estuar. Coast. Shelf Sci. 48:143-153.
    • (1999) Estuar. Coast. Shelf Sci. , vol.48 , pp. 143-153
    • Hyun, J.H.1    Choi, J.K.2    Chung, K.H.3    Yang, E.J.4    Kim, M.K.5
  • 18
    • 0001169290 scopus 로고
    • Leucine incorporation as a measure of biomass production by heterotrophic bacteria
    • P. F. Kemp, B. F. Sherr, E. B. Sherr, and J. J. Cole (ed.), Lewis Publishers, Boca Raton, Fla
    • Kirchman, D. L 1993. Leucine incorporation as a measure of biomass production by heterotrophic bacteria, p. 513-517. In P. F. Kemp, B. F. Sherr, E. B. Sherr, and J. J. Cole (ed.), Handbook of methods in aquatic microbial ecology. Lewis Publishers, Boca Raton, Fla.
    • (1993) Handbook of Methods in Aquatic Microbial Ecology , pp. 513-517
    • Kirchman, D.L.1
  • 20
    • 0036733526 scopus 로고    scopus 로고
    • A comment on the use of flushing time, residence time, and age as transport time scales
    • Monsen, N. E., J. E. Cloern, L. V. Lucas, and S. G. Monismith. 2002. A comment on the use of flushing time, residence time, and age as transport time scales. Limnol. Oceanogr. 47:1545-1553.
    • (2002) Limnol. Oceanogr. , vol.47 , pp. 1545-1553
    • Monsen, N.E.1    Cloern, J.E.2    Lucas, L.V.3    Monismith, S.G.4
  • 21
    • 0030036446 scopus 로고    scopus 로고
    • Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments
    • Murray, A. E., J. T. Hollibaugh, and C. Orrego. 1996. Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments. Appl. Environ. Microbiol. 62:2676-2680.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2676-2680
    • Murray, A.E.1    Hollibaugh, J.T.2    Orrego, C.3
  • 22
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S ribosomal RNA
    • Muyzer, G., E. C. Dewaal, and A. G. Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S ribosomal RNA. Appl. Environ. Microbiol. 59:695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    Dewaal, E.C.2    Uitterlinden, A.G.3
  • 23
    • 0003298663 scopus 로고
    • Physical aspects of the Columbia River and its estuary
    • A. T. Pruter and D. L. Alverson (ed.). University of Washington Press, Seattle
    • Neal, V. T. 1972. Physical aspects of the Columbia River and its estuary, p. 19-40. In A. T. Pruter and D. L. Alverson (ed.), The Columbia River estuary and adjacent coastal waters. University of Washington Press, Seattle.
    • (1972) The Columbia River Estuary and Adjacent Coastal Waters , pp. 19-40
    • Neal, V.T.1
  • 26
    • 0028982149 scopus 로고
    • Physical processes controlling bacterial distribution and variability in the upper St. Lawrence estuary
    • Painchaud, J., D. Lefaivre, J. C. Therriault, and L. Legendre. 1995. Physical processes controlling bacterial distribution and variability in the upper St. Lawrence estuary. Estuaries 18:433-444.
    • (1995) Estuaries , vol.18 , pp. 433-444
    • Painchaud, J.1    Lefaivre, D.2    Therriault, J.C.3    Legendre, L.4
  • 27
    • 84986870589 scopus 로고
    • The use of DAPI for identifying and counting aquatic microflora
    • Porter, K. G., and Y. S. Feig. 1980. The use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr. 25:943-948.
    • (1980) Limnol. Oceanogr. , vol.25 , pp. 943-948
    • Porter, K.G.1    Feig, Y.S.2
  • 28
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada, D., and K. A. Crandall. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 29
  • 30
    • 0037043731 scopus 로고    scopus 로고
    • Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
    • Rappe, M. S., S. A. Connon, K. L. Vergin, and S. J. Giovannoni. 2002. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418:630-633.
    • (2002) Nature , vol.418 , pp. 630-633
    • Rappe, M.S.1    Connon, S.A.2    Vergin, K.L.3    Giovannoni, S.J.4
  • 31
    • 0033824875 scopus 로고    scopus 로고
    • Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems
    • Rappe, M. S., K. Vergin, and S. J. Giovannoni. 2000. Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems. FEMS Microbiol. Ecol. 33:219-232.
    • (2000) FEMS Microbiol. Ecol. , vol.33 , pp. 219-232
    • Rappe, M.S.1    Vergin, K.2    Giovannoni, S.J.3
  • 33
    • 0037461960 scopus 로고    scopus 로고
    • Composition and dynamics of particle-associated and free-living bacterial communities in the Weser estuary, Germany
    • Selje, N., and M. Simon. 2003. Composition and dynamics of particle-associated and free-living bacterial communities in the Weser estuary, Germany. Aquat. Microb. Ecol. 30:221-237.
    • (2003) Aquat. Microb. Ecol. , vol.30 , pp. 221-237
    • Selje, N.1    Simon, M.2
  • 34
    • 0036428590 scopus 로고    scopus 로고
    • Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition
    • Simek, K., J. Nedoma, J. Pernthaler, T. Posch, and J. R. Dolan. 2002. Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition. Antonie Leeuwenhoek 81:453-463.
    • (2002) Antonie Leeuwenhoek , vol.81 , pp. 453-463
    • Simek, K.1    Nedoma, J.2    Pernthaler, J.3    Posch, T.4    Dolan, J.R.5
  • 35
    • 0033779776 scopus 로고    scopus 로고
    • Seasonal variations of size-fractionated phytoplankton along the salinity gradient in the York River estuary, Virginia (USA)
    • Sin, Y., R. L. Wetzel, and I. C. Anderson. 2000. Seasonal variations of size-fractionated phytoplankton along the salinity gradient in the York River estuary, Virginia (USA). J. Plankton Res. 22:1945-1960.
    • (2000) J. Plankton Res. , vol.22 , pp. 1945-1960
    • Sin, Y.1    Wetzel, R.L.2    Anderson, I.C.3
  • 36
    • 0002132256 scopus 로고    scopus 로고
    • Bacterivory: Interactions between bacteria and their grazers
    • D. L. Kirchman (ed.). Wiley-Liss, Inc., New York, N.Y.
    • Strom, S. L. 2000. Bacterivory: interactions between bacteria and their grazers, p. 351-386. In D. L. Kirchman (ed.), Microbial ecology of the oceans. Wiley-Liss, Inc., New York, N.Y.
    • (2000) Microbial Ecology of the Oceans , pp. 351-386
    • Strom, S.L.1
  • 38
    • 0019734376 scopus 로고
    • Survival and heterotrophic activities of Fraser River and Strait of Georgia bacterioplankton within the Fraser River plume
    • Valdés, M., and L. J. Albright. 1981. Survival and heterotrophic activities of Fraser River and Strait of Georgia bacterioplankton within the Fraser River plume. Mar. Biol. 64:231-241.
    • (1981) Mar. Biol. , vol.64 , pp. 231-241
    • Valdés, M.1    Albright, L.J.2
  • 39
    • 0032033852 scopus 로고    scopus 로고
    • Estimation of dispersion and characteristic mixing times in Plum Island Sound estuary
    • Vallino, J. J., and C. S. Hopkinson. 1998. Estimation of dispersion and characteristic mixing times in Plum Island Sound estuary. Estuar. Coast. Shelf Sci. 46:333-350.
    • (1998) Estuar. Coast. Shelf Sci. , vol.46 , pp. 333-350
    • Vallino, J.J.1    Hopkinson, C.S.2
  • 40
    • 0029789623 scopus 로고    scopus 로고
    • A quantitative map of nucleotide substitution rates in bacterial rRNA
    • Van de Peer, Y., S. Chapelle, and R. De Wachter. 1996. A quantitative map of nucleotide substitution rates in bacterial rRNA. Nucleic Acids Res. 24: 3381-3391.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 3381-3391
    • Van De Peer, Y.1    Chapelle, S.2    De Wachter, R.3
  • 41
    • 0033050123 scopus 로고    scopus 로고
    • Detritus-dependent development of the microbial community in an experimental system: Qualitative analysis by denaturing gradient gel electrophoresis
    • van Hannen, E. J., W. Mooij, M. P. van Agterveld, H. J. Gons, and H. J. Laanbroek. 1999. Detritus-dependent development of the microbial community in an experimental system: qualitative analysis by denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 65:2478-2484.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 2478-2484
    • Van Hannen, E.J.1    Mooij, W.2    Van Agterveld, M.P.3    Gons, H.J.4    Laanbroek, H.J.5
  • 42
    • 0032907003 scopus 로고    scopus 로고
    • Genetic changes in the bacterial community structure associated with protistan grazers
    • van Hannen, E. J., M. Veninga, J. Bloem, H. J. Gons, and H. J. Laanbroek. 1999. Genetic changes in the bacterial community structure associated with protistan grazers. Arch. Hydrobiol. 145:25-38.
    • (1999) Arch. Hydrobiol. , vol.145 , pp. 25-38
    • Van Hannen, E.J.1    Veninga, M.2    Bloem, J.3    Gons, H.J.4    Laanbroek, H.J.5
  • 43
    • 0017123828 scopus 로고
    • Survival of bacteria in seawater using a diffusion chamber apparatus in situ
    • Vasconcelos, G. J., and R. G. Swartz. 1976. Survival of bacteria in seawater using a diffusion chamber apparatus in situ. Appl. Environ. Microbiol. 31: 913-920.
    • (1976) Appl. Environ. Microbiol. , vol.31 , pp. 913-920
    • Vasconcelos, G.J.1    Swartz, R.G.2
  • 44
    • 0028160123 scopus 로고
    • Spring neap tidal contrasts and nutrient dynamics in a marsh-dominated estuary
    • Vorosmarty, C. J., and T. C. Loder. 1994. Spring neap tidal contrasts and nutrient dynamics in a marsh-dominated estuary. Estuaries 17:537-551.
    • (1994) Estuaries , vol.17 , pp. 537-551
    • Vorosmarty, C.J.1    Loder, T.C.2
  • 45
    • 84983886244 scopus 로고
    • The relation of periphytic and planktonic algal growth in an estuary to hydrographic factors
    • Welch, E. B., R. M. Emery, R. I. Matsuda, and W. A. Dawson. 1972. The relation of periphytic and planktonic algal growth in an estuary to hydrographic factors. Limnol. Oceanogr. 17:731-737.
    • (1972) Limnol. Oceanogr. , vol.17 , pp. 731-737
    • Welch, E.B.1    Emery, R.M.2    Matsuda, R.I.3    Dawson, W.A.4
  • 46
    • 0023500669 scopus 로고
    • Dynamics of planktonic bacteria and heterotrophic microflagellates in the Parker estuary, northern Massachusetts
    • Wright, R. T., R. B. Coffin, and M. E. Lebo. 1987. Dynamics of planktonic bacteria and heterotrophic microflagellates in the Parker estuary, northern Massachusetts. Cont. Shelf Res. 7:1383-1397.
    • (1987) Cont. Shelf Res. , vol.7 , pp. 1383-1397
    • Wright, R.T.1    Coffin, R.B.2    Lebo, M.E.3
  • 47
    • 0037178021 scopus 로고    scopus 로고
    • Typical freshwater bacteria: An analysis of available 16S rRNA gene sequences from plankton of lakes and rivers
    • Zwart, G., B. C. Crump, M. Agterveld, F. Hagen, and S. K. Han. 2002. Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat. Microb. Ecol. 28:141-155.
    • (2002) Aquat. Microb. Ecol. , vol.28 , pp. 141-155
    • Zwart, G.1    Crump, B.C.2    Agterveld, M.3    Hagen, F.4    Han, S.K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.