-
1
-
-
0029832927
-
Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
-
Barns, S. M,, Delwiche, C. F., Palmer, J. D. & Pace, N. R. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl Acad. Sci. USA 93, 9188-9193 (1996).
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9188-9193
-
-
Barns, S.M.1
Delwiche, C.F.2
Palmer, J.D.3
Pace, N.R.4
-
2
-
-
0037007636
-
A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
-
Huber, H. et al. A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Nature 417, 63-67 (2002).
-
(2002)
Nature
, vol.417
, pp. 63-67
-
-
Huber, H.1
-
3
-
-
0344035670
-
Genetic diversity of archaea in deep-sea hydrothermal vent environments
-
Takai, K. & Horikoshi, K. Genetic diversity of archaea in deep-sea hydrothermal vent environments. Genetics 152, 1285-1297 (1999).
-
(1999)
Genetics
, vol.152
, pp. 1285-1297
-
-
Takai, K.1
Horikoshi, K.2
-
4
-
-
0036596334
-
Evolution of the Archaea
-
Forterre, P., Brochier, C. & Philippe, H. Evolution of the Archaea. Theor. Popul. Biol. 61, 409-422 (2002).
-
(2002)
Theor. Popul. Biol.
, vol.61
, pp. 409-422
-
-
Forterre, P.1
Brochier, C.2
Philippe, H.3
-
5
-
-
0035816676
-
Massive expansion of marine archaea during a mid-Cretaceous oceanic anoxic event
-
Kuypers, M. M. et al. Massive expansion of marine archaea during a mid-Cretaceous oceanic anoxic event. Science 293, 92-95 (2001).
-
(2001)
Science
, vol.293
, pp. 92-95
-
-
Kuypers, M.M.1
-
6
-
-
0031013145
-
Molecular phylogeny of Archaea from soil
-
Bintrim, S. B., Donohue, T. J., Handelsman, J., Roberts, G. P. & Goodman, R. M. Molecular phylogeny of Archaea from soil. Proc. Natl Acad. Sci. USA 94, 277-282 (1997).
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 277-282
-
-
Bintrim, S.B.1
Donohue, T.J.2
Handelsman, J.3
Roberts, G.P.4
Goodman, R.M.5
-
7
-
-
0031733317
-
Phylogenetic analysis of nonthermophilic members of the kingdom crenarchaeota and their diversity and abundance in soils
-
Buckley, D. H., Graber, J. R. & Schmidt, T. M. Phylogenetic analysis of nonthermophilic members of the kingdom crenarchaeota and their diversity and abundance in soils. Appl. Environ. Microbiol. 64, 4333-4339 (1998).
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4333-4339
-
-
Buckley, D.H.1
Graber, J.R.2
Schmidt, T.M.3
-
8
-
-
0042853314
-
Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR
-
Ochsenreiter, T., Selezi, D., Quaiser, A., Bonch-Osmolovskaya, L. & Schleper, C. Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environ. Microbiol. 5, 787-797 (2003).
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 787-797
-
-
Ochsenreiter, T.1
Selezi, D.2
Quaiser, A.3
Bonch-Osmolovskaya, L.4
Schleper, C.5
-
9
-
-
0032792809
-
Abundance and diversity of Archaea in heavy-metal-contaminated soils
-
Sandaa, R. A., Enger, O. & Torsvik, V. Abundance and diversity of Archaea in heavy-metal-contaminated soils. Appl. Environ. Microbiol. 65, 3293-3297 (1999).
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3293-3297
-
-
Sandaa, R.A.1
Enger, O.2
Torsvik, V.3
-
10
-
-
0034551673
-
Crenarchaeota colonize terrestrial plant roots
-
Simon, H. M., Dodsworth, J. A. & Goodman, R. M. Crenarchaeota colonize terrestrial plant roots. Environ. Microbiol. 2, 495-505 (2000).
-
(2000)
Environ. Microbiol.
, vol.2
, pp. 495-505
-
-
Simon, H.M.1
Dodsworth, J.A.2
Goodman, R.M.3
-
11
-
-
0030894624
-
Novel group within the kingdom Crenarchaeota from boreal forest soil
-
Jurgens, G., Lindstrom, K. & Saano A. Novel group within the kingdom Crenarchaeota from boreal forest soil. Appl. Environ. Microbiol. 63, 803-805 (1997).
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 803-805
-
-
Jurgens, G.1
Lindstrom, K.2
Saano, A.3
-
12
-
-
0026755238
-
Archaea in coastal marine environments
-
DeLong, E. F. Archaea in coastal marine environments. Proc. Natl Acad. Sci. USA 89, 5685-5689 (1992).
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 5685-5689
-
-
DeLong, E.F.1
-
13
-
-
0026525546
-
Novel major archaebacterial group from marine plankton
-
Fuhrman, J. A., McCallum, K. & Davis, A. A. Novel major archaebacterial group from marine plankton. Nature 356, 148-149 (1992).
-
(1992)
Nature
, vol.356
, pp. 148-149
-
-
Fuhrman, J.A.1
McCallum, K.2
Davis, A.A.3
-
14
-
-
18844481026
-
A marine microbial consortium apparently mediating anaerobic oxidation of methane
-
Boetius, A. et al. A marine microbial consortium apparently mediating anaerobic oxidation of methane. Nature 407, 623-626 (2000).
-
(2000)
Nature
, vol.407
, pp. 623-626
-
-
Boetius, A.1
-
15
-
-
0037188554
-
Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments
-
Orphan, V. J., House, C. H., Hinrichs, K. U., McKeegan, K. D. & Delong, E. F. Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments. Proc. Natl Acad. Sci. USA 99, 7663-7668 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 7663-7668
-
-
Orphan, V.J.1
House, C.H.2
Hinrichs, K.U.3
McKeegan, K.D.4
Delong, E.F.5
-
16
-
-
0142186057
-
Archaeal nucleic acids in picoplankton from great lakes on three continents
-
Keough, B. P., Schmidt, T. M. & Hicks, R. E. Archaeal nucleic acids in picoplankton from great lakes on three continents. Microb. Ecol. 46, 238-248 (2003).
-
(2003)
Microb. Ecol.
, vol.46
, pp. 238-248
-
-
Keough, B.P.1
Schmidt, T.M.2
Hicks, R.E.3
-
17
-
-
0031033118
-
Crenarchaeota in Lake Michigan sediment
-
MacGregor, B. J., Moser, D. P.. Alm, E. W., Nealson, K. H. & Stahl, D. A. Crenarchaeota in Lake Michigan sediment. Appl. Environ. Microbiol. 63, 1178-1181 (1997).
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 1178-1181
-
-
MacGregor, B.J.1
Moser, D.P.2
Alm, E.W.3
Nealson, K.H.4
Stahl, D.A.5
-
18
-
-
0031033384
-
Recovery of crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments
-
Schleper, C., Holden, W. & Klenk, H. P. Recovery of crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments. Appl. Environ. Microbiol. 63, 321-323 (1997).
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 321-323
-
-
Schleper, C.1
Holden, W.2
Klenk, H.P.3
-
19
-
-
0033771975
-
Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization
-
Jurgens, G. et al. Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization. FEMS Microbiol. Ecol. 34, 45-56 (2000).
-
(2000)
FEMS Microbiol. Ecol.
, vol.34
, pp. 45-56
-
-
Jurgens, G.1
-
20
-
-
0035656111
-
Archaeal diversity in waters from deep South African gold mines
-
Takai, K., Moser, D. P., DeFlaun, M., Onstott, T. C. & Fredrickson, J. K. Archaeal diversity in waters from deep South African gold mines. Appl. Environ. Microbiol. 67, 5750-5760 (2001).
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5750-5760
-
-
Takai, K.1
Moser, D.P.2
DeFlaun, M.3
Onstott, T.C.4
Fredrickson, J.K.5
-
21
-
-
0036790017
-
Microbial population genomics and ecology
-
DeLong, E. F. Microbial population genomics and ecology. Curr. Opin. Microbiol. 5, 520-524 (2002).
-
(2002)
Curr. Opin. Microbiol.
, vol.5
, pp. 520-524
-
-
DeLong, E.F.1
-
22
-
-
10344227692
-
Metagenomics: Application of genomics to uncultured microorganisms
-
Handelsman, J. Metagenomics: application of genomics to uncultured microorganisms. Microbiol. Mol. Biol. Rev. 68, 669-685 (2004).
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, pp. 669-685
-
-
Handelsman, J.1
-
23
-
-
19144362705
-
Environmental genomics: A novel tool to study uncultivated microorganisms
-
(ed. Sensen, C. W.) in the press (Will-VCH, Weinheim)
-
Treusch, A. H., Schleper, C. Environmental genomics: a novel tool to study uncultivated microorganisms. In Handbook of Genome Research (ed. Sensen, C. W.) in the press (Will-VCH, Weinheim, 2005).
-
(2005)
Handbook of Genome Research
-
-
Treusch, A.H.1
Schleper, C.2
-
24
-
-
0036181778
-
Exploring prokaryotic diversity in the genomic era
-
REVIEWS0003
-
Hugenholtz, P. Exploring prokaryotic diversity in the genomic era. Genome Biol. 3, REVIEWS0003 (2002).
-
(2002)
Genome Biol.
, vol.3
-
-
Hugenholtz, P.1
-
25
-
-
0023039691
-
Archaebacterial phylogeny: Perspectives on the urkingdoms
-
Woese, C. R. & Olsen, G. J. Archaebacterial phylogeny: perspectives on the urkingdoms. Syst. Appl. Microbiol. 7, 161-177 (1986).
-
(1986)
Syst. Appl. Microbiol.
, vol.7
, pp. 161-177
-
-
Woese, C.R.1
Olsen, G.J.2
-
26
-
-
0042838234
-
In situ growth of the novel SM1 euryarrhaeon from a string-of-pearls-like microbial community in its cold biotope, its physical separation and insights into its structure and physiology
-
Moissl, C., Rudolph, C., Rachel, R., Koch, M. & Huber, R. In situ growth of the novel SM1 euryarrhaeon from a string-of-pearls-like microbial community in its cold biotope, its physical separation and insights into its structure and physiology. Arch. Microbiol. 180, 211-217 (2003).
-
(2003)
Arch. Microbiol.
, vol.180
, pp. 211-217
-
-
Moissl, C.1
Rudolph, C.2
Rachel, R.3
Koch, M.4
Huber, R.5
-
27
-
-
0032729451
-
Visualization and enumeration of marine planktonic archaea and bacteria by using polyribonucleotide probes and fluorescent in situ hybridization
-
DeLong, E. F., Taylor, L. T., Marsh, T. L. & Preston, C. M. Visualization and enumeration of marine planktonic archaea and bacteria by using polyribonucleotide probes and fluorescent in situ hybridization. Appl. Environ. Microbiol. 65, 5554-5563 (1999).
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 5554-5563
-
-
DeLong, E.F.1
Taylor, L.T.2
Marsh, T.L.3
Preston, C.M.4
-
28
-
-
15844365305
-
A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov,, sp. nov
-
Preston, C. M., Wu, K. Y., Molinski, T. F. & DeLong, E. F. A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov,, sp. nov. Proc. Natl Acad. Sci. USA 93, 6241-6246 (1996).
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 6241-6246
-
-
Preston, C.M.1
Wu, K.Y.2
Molinski, T.F.3
DeLong, E.F.4
-
29
-
-
0035945618
-
Archaeal dominance in the mesopelagic zone of the Pacific Ocean
-
Karner, M. B., DeLong, A. E., & Karl, D. M. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409, 507-510 (2001).
-
(2001)
Nature
, vol.409
, pp. 507-510
-
-
Karner, M.B.1
DeLong, A.E.2
Karl, D.M.3
-
30
-
-
0030620440
-
Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel
-
Massana, R., Murray, A. E., Preston, C. M. & DeLong, E. F. Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Appl. Environ. Microbiol. 63, 50-56 (1997).
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 50-56
-
-
Massana, R.1
Murray, A.E.2
Preston, C.M.3
DeLong, E.F.4
-
31
-
-
0032868072
-
Population structure and phylogenetic characterization of marine benthic Archaea in deep-sea sediments
-
Vetriani, C.,Jannasch, H. W., MacGregor, B. J,, Stahl, D. A. & Reysenbach, A. L. Population structure and phylogenetic characterization of marine benthic Archaea in deep-sea sediments. Appl. Environ. Microbiol. 65, 4375-4384 (1999).
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 4375-4384
-
-
Vetriani, C.1
Jannasch, H.W.2
MacGregor, B.J.3
Stahl, D.A.4
Reysenbach, A.L.5
-
32
-
-
0041565166
-
Diversity of symbiotic archaeal communities in marine sponges from Korea
-
Lee, E. Y., Lee, H. K., Lee, Y. K., Sim, C. J. & Lee, J. H. Diversity of symbiotic archaeal communities in marine sponges from Korea. Biomol. Eng. 20, 299-304 (2003).
-
(2003)
Biomol. Eng.
, vol.20
, pp. 299-304
-
-
Lee, E.Y.1
Lee, H.K.2
Lee, Y.K.3
Sim, C.J.4
Lee, J.H.5
-
33
-
-
0036944292
-
Consistent association of crenarchaeal Archaea with sponges of the genus Axinella
-
Margot, H., Acebal, C., Toril, E., Amils, R. & Fernandez, P. J. L. Consistent association of crenarchaeal Archaea with sponges of the genus Axinella. Marine Biology 140, 739-745 (2002).
-
(2002)
Marine Biology
, vol.140
, pp. 739-745
-
-
Margot, H.1
Acebal, C.2
Toril, E.3
Amils, R.4
Fernandez, P.J.L.5
-
34
-
-
0035704760
-
Detection and phylogenetic analysis of novel crenarchaeote and euryarchaeote 16S ribosomal RNA gene sequences from a Great Barrier Reef sponge
-
Webster, N. S., Watts, J. E. & Hill, R. T. Detection and phylogenetic analysis of novel crenarchaeote and euryarchaeote 16S ribosomal RNA gene sequences from a Great Barrier Reef sponge. Mar. Biotechnol. (NY) 3, 600-608 (2001).
-
(2001)
Mar. Biotechnol. (NY)
, vol.3
, pp. 600-608
-
-
Webster, N.S.1
Watts, J.E.2
Hill, R.T.3
-
35
-
-
12244272161
-
Diversity and distribution of methanotrophic archaea at cold seeps
-
Knittel, K., Losekann, T, Boetius, A., Kort, R. & Amann, R. Diversity and distribution of methanotrophic archaea at cold seeps. Appl. Environ. Microbiol. 71, 467-479 (2005).
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 467-479
-
-
Knittel, K.1
Losekann, T.2
Boetius, A.3
Kort, R.4
Amann, R.5
-
36
-
-
2142858733
-
Spatial analysis of archaeal community structure in grassland soil
-
Nicol, G. W., Glover, L. A. & Prosser, J. I. Spatial analysis of archaeal community structure in grassland soil. Appl. Environ. Microbiol. 69, 7420-7429 (2003).
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 7420-7429
-
-
Nicol, G.W.1
Glover, L.A.2
Prosser, J.I.3
-
37
-
-
0037345250
-
The impact of grassland management on archaeal community structure in upland pasture rhizosphere soil
-
Nicol, G. W., Glover, L. A. & Prosser, J. I. The impact of grassland management on archaeal community structure in upland pasture rhizosphere soil. Environ. Microbiol. 5, 152-162 (2003).
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 152-162
-
-
Nicol, G.W.1
Glover, L.A.2
Prosser, J.I.3
-
38
-
-
3543109163
-
Differential response of archaeal and bacterial communities to nitrogen inputs and pH changes in upland pasture rhizosphere soil
-
Nicol, G. W., Webster, G., Glover, L. A. & Prosser, J. I. Differential response of archaeal and bacterial communities to nitrogen inputs and pH changes in upland pasture rhizosphere soil. Environ. Microbiol. 6, 861-867 (2004).
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 861-867
-
-
Nicol, G.W.1
Webster, G.2
Glover, L.A.3
Prosser, J.I.4
-
39
-
-
1642296563
-
Spatial heterogeneity of crenarchaeal assemblages within mesophilic soil ecosystems as revealed by PCR-single-stranded conformation polymorphism profiling
-
Sliwinski M. K. & Goodman, R. M. Spatial heterogeneity of crenarchaeal assemblages within mesophilic soil ecosystems as revealed by PCR-single-stranded conformation polymorphism profiling. Appl. Environ. Microbiol. 70, 1811-1820 (2004).
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 1811-1820
-
-
Sliwinski, M.K.1
Goodman, R.M.2
-
40
-
-
10644271631
-
Archaeal genetics - The third way
-
Allers, T. & Mevarech, M. Archaeal genetics - the third way. Nature Rev. Genet. 6, 58-73 (2005).
-
(2005)
Nature Rev. Genet.
, vol.6
, pp. 58-73
-
-
Allers, T.1
Mevarech, M.2
-
41
-
-
0043011009
-
Comparative genomics of Archaea: How much have we learned in six years and what's next?
-
Makarova, K. S. & Koonin, E. V. Comparative genomics of Archaea: how much have we learned in six years, and what's next? Genome Biol. 4, 115 (2003).
-
(2003)
Genome Biol.
, vol.4
, pp. 115
-
-
Makarova, K.S.1
Koonin, E.V.2
-
42
-
-
0017816446
-
Archaebacteria
-
Woese, C. R., Magrum, L. J. & Fox, G. E. Archaebacteria. J. Mol. Evol. 11, 245-251 (1978).
-
(1978)
J. Mol. Evol.
, vol.11
, pp. 245-251
-
-
Woese, C.R.1
Magrum, L.J.2
Fox, G.E.3
-
43
-
-
0032102006
-
Transcription and translation in Archaea: A mosaic of eukaryal and bacterial features
-
Bell, S. D. & Jackson, S. P. Transcription and translation in Archaea: a mosaic of eukaryal and bacterial features. Trends Microbiol. 6, 222-228 (1998).
-
(1998)
Trends Microbiol.
, vol.6
, pp. 222-228
-
-
Bell, S.D.1
Jackson, S.P.2
-
44
-
-
0037772376
-
An archaeal XPF repair endonuclease dependent on a heterotrimeric PCNA
-
Roberts, J. A., Bell, S. D. & White, M. F. An archaeal XPF repair endonuclease dependent on a heterotrimeric PCNA. Mol. Microbiol. 48, 361-371 (2003).
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 361-371
-
-
Roberts, J.A.1
Bell, S.D.2
White, M.F.3
-
45
-
-
0742269690
-
Identification of two origins of replication in the single chromosome of the archaeon Sulfolobus solfataricus
-
Robinson, N. P. et al. Identification of two origins of replication in the single chromosome of the archaeon Sulfolobus solfataricus. Cell 116, 25-38 (2004).
-
(2004)
Cell
, vol.116
, pp. 25-38
-
-
Robinson, N.P.1
-
46
-
-
0036890204
-
Holding it together: Chromatin in the Archaea
-
White, M. F. & Bell, S. D. Holding it together: chromatin in the Archaea. Trends Genet. 18, 621-626 (2002).
-
(2002)
Trends Genet.
, vol.18
, pp. 621-626
-
-
White, M.F.1
Bell, S.D.2
-
47
-
-
0021092718
-
Archaebacteria and eukaryotes possess DNA-dependent RNA polymerases of a common type
-
Huet, J., Schnabel, R., Sentenac, A. & Zillig, W. Archaebacteria and eukaryotes possess DNA-dependent RNA polymerases of a common type. EMBO J. 2, 1291-1294 (1983).
-
(1983)
EMBO J.
, vol.2
, pp. 1291-1294
-
-
Huet, J.1
Schnabel, R.2
Sentenac, A.3
Zillig, W.4
-
48
-
-
0024283940
-
Analysis of transcription in the archaebacterium Sulfolobus indicates that archaebacterial promoters are homologous to eukaryotic pol II promoters
-
Reiter, W, D., Palm, P. & Zillig, W. Analysis of transcription in the archaebacterium Sulfolobus indicates that archaebacterial promoters are homologous to eukaryotic pol II promoters. Nucleic Acids Res. 16, 1-19 (1988).
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 1-19
-
-
Reiter, W.D.1
Palm, P.2
Zillig, W.3
-
49
-
-
0030023659
-
Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon
-
Stein, J. L., Marsh, T. L., Wu, K. Y., Shizuya, H. & DeLong, E. F. Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon. J. Bacteriol. 178, 591-599 (1996).
-
(1996)
J. Bacteriol.
, vol.178
, pp. 591-599
-
-
Stein, J.L.1
Marsh, T.L.2
Wu, K.Y.3
Shizuya, H.4
DeLong, E.F.5
-
50
-
-
0036135990
-
Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces
-
Beja, O. et al. Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces. Appl. Environ. Microbiol. 68, 335-345 (2002).
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 335-345
-
-
Beja, O.1
-
51
-
-
0034554741
-
Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage
-
Beja, O. et al. Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. Environ. Microbiol. 2, 516-529 (2000).
-
(2000)
Environ. Microbiol.
, vol.2
, pp. 516-529
-
-
Beja, O.1
-
52
-
-
17644441088
-
Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers
-
Lopez-Garcia, P., Brochier, C., Moreira, D. & Rodriguez-Valera, F. Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers. Environ. Microbiol. 6, 19-34 (2004).
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 19-34
-
-
Lopez-Garcia, P.1
Brochier, C.2
Moreira, D.3
Rodriguez-Valera, F.4
-
53
-
-
4344718483
-
Analysis of a genome fragment of a deep-sea uncultivated Group II euryarchaeote containing 16S rDNA, a spectinomycin-like operon and several energy metabolism genes
-
Moreira, D., Rodriguez-Valera, F. & Lopez-Garcia, P. Analysis of a genome fragment of a deep-sea uncultivated Group II euryarchaeote containing 16S rDNA, a spectinomycin-like operon and several energy metabolism genes. Environ. Microbiol. 6, 959-969 (2004).
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 959-969
-
-
Moreira, D.1
Rodriguez-Valera, F.2
Lopez-Garcia, P.3
-
54
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter, J. C. et al. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304, 66-74 (2004).
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
-
55
-
-
0031680049
-
Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum
-
Schleper, C. et al. Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum. J. Bacteriol. 180, 5003-5009 (1998).
-
(1998)
J. Bacteriol.
, vol.180
, pp. 5003-5009
-
-
Schleper, C.1
-
56
-
-
0030865449
-
Characterization of a DNA polymerase from the uncultivated psychrophilic archaeon Cenarchaeum symbiosum
-
Schleper, C., Swanson, R. V., Mathur, E. J. & DeLong, E. F. Characterization of a DNA polymerase from the uncultivated psychrophilic archaeon Cenarchaeum symbiosum. J. Bacteriol. 179, 7803-7811 (1997).
-
(1997)
J. Bacteriol.
, vol.179
, pp. 7803-7811
-
-
Schleper, C.1
Swanson, R.V.2
Mathur, E.J.3
DeLong, E.F.4
-
57
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson, G. W. et al. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428, 37-43 (2004).
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
-
58
-
-
0030894624
-
Novel group within the kingdom Crenarchaeota from boreal forest soil
-
Jurgens, G., Lindstrom, K. & Saano, A. Novel group within the kingdom Crenarchaeota from boreal forest soil. Appl. Environ. Microbiol. 63, 803-805 (1997).
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 803-805
-
-
Jurgens, G.1
Lindstrom, K.2
Saano, A.3
-
59
-
-
0037052493
-
Prokaryotic diversity - Magnitude, dynamics, and controlling factors
-
Torsvik, V., Ovreas, L. & Thingstad, T. F. Prokaryotic diversity - magnitude, dynamics, and controlling factors. Science 296, 1064-1066 (2002).
-
(2002)
Science
, vol.296
, pp. 1064-1066
-
-
Torsvik, V.1
Ovreas, L.2
Thingstad, T.F.3
-
60
-
-
0036677450
-
Estimating prokaryotic diversity and its limits
-
Curtis, T. P., Sloan, W. T. & Scannell, J. W. Estimating prokaryotic diversity and its limits. Proc. Natl Acad. Sci. USA 99, 10494-10499 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 10494-10499
-
-
Curtis, T.P.1
Sloan, W.T.2
Scannell, J.W.3
-
61
-
-
0036802038
-
First insight into the genome of an uncultivated crenarchaeote from soil
-
Quaiser, A. et al. First insight into the genome of an uncultivated crenarchaeote from soil. Environ. Microbiol. 4, 603-611 (2002).
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 603-611
-
-
Quaiser, A.1
-
62
-
-
0033214501
-
The Earth's bounty: Assessing and accessing soil microbial diversity
-
Rondon, M. R., Goodman, R. M. & Handelsman, J. The Earth's bounty: assessing and accessing soil microbial diversity. Trends Biotechnol. 17, 403-409 (1999).
-
(1999)
Trends Biotechnol.
, vol.17
, pp. 403-409
-
-
Rondon, M.R.1
Goodman, R.M.2
Handelsman, J.3
-
63
-
-
0042126088
-
Acidobacteria form a coherent but highly diverse group within the bacterial domain: Evidence from environmental genomics
-
Quaiser, A. et al. Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics. Mol. Microbiol. 50, 563-575 (2003).
-
(2003)
Mol. Microbiol.
, vol.50
, pp. 563-575
-
-
Quaiser, A.1
-
64
-
-
4344693429
-
Characterization of large-insert DNA libraries from soil for environmental genomic studies of Archaea
-
Treusch, A. H. et al. Characterization of large-insert DNA libraries from soil for environmental genomic studies of Archaea. Environ. Microbiol. 6, 970-980 (2004).
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 970-980
-
-
Treusch, A.H.1
-
65
-
-
0036038187
-
Molecular biology and biochemistry of ammonia oxidation by Nitrosomonas europaea
-
Arp, D. J., Sayavedra-Soto, L. A. & Hommes, N. G. Molecular biology and biochemistry of ammonia oxidation by Nitrosomonas europaea. Arch. Microbiol. 178, 250-255 (2002).
-
(2002)
Arch. Microbiol.
, vol.178
, pp. 250-255
-
-
Arp, D.J.1
Sayavedra-Soto, L.A.2
Hommes, N.G.3
-
66
-
-
19144364248
-
Population Genomics of Soil Microbial communities
-
104th General meeting of the American Society for Microbiology, New Orleans, Louisiana
-
Schleper, C. Population Genomics of Soil Microbial communities. 104th General meeting of the American Society for Microbiology, New Orleans, Louisiana (2004).
-
(2004)
-
-
Schleper, C.1
-
67
-
-
0037469625
-
Bicarbonate uptake by marine Crenarchaeota
-
Wuchter, C., Schouten, S., Boschker, H. T. & Sinninghe Damste, J. S. Bicarbonate uptake by marine Crenarchaeota. FEMS Microbiol. Lett. 219, 203-207 (2003).
-
(2003)
FEMS Microbiol. Lett.
, vol.219
, pp. 203-207
-
-
Wuchter, C.1
Schouten, S.2
Boschker, H.T.3
Sinninghe Damste, J.S.4
-
68
-
-
0031456471
-
Cell biology and molecular basis of denitrification
-
Zumft, W. G. Cell biology and molecular basis of denitrification. Microbiol. Mol. Biol. Rev. 61, 533-616 (1997).
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 533-616
-
-
Zumft, W.G.1
-
69
-
-
11044228870
-
Denitrification and ammonia oxidation by Nitrosomonas europaea wild-type, and NirK- and NorB-deficient mutants
-
Schmidt, I., van Spanning, R. J. & Jetten, M. S. Denitrification and ammonia oxidation by Nitrosomonas europaea wild-type, and NirK- and NorB-deficient mutants. Microbiology 150, 4107-4104 (2004).
-
(2004)
Microbiology
, vol.150
, pp. 4104-4107
-
-
Schmidt, I.1
van Spanning, R.J.2
Jetten, M.S.3
-
70
-
-
0033614388
-
Methane-consuming archaebacteria in marine sediments
-
Hinrichs, K. U., Hayes, J. M,, Sylva, S. P., Brewer, P. G. & DeLong, E, F. Methane-consuming archaebacteria in marine sediments. Nature 398, 802-805 (1999).
-
(1999)
Nature
, vol.398
, pp. 802-805
-
-
Hinrichs, K.U.1
Hayes, J.M.2
Sylva, S.P.3
Brewer, P.G.4
DeLong, E.F.5
-
71
-
-
0035919654
-
Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis
-
Orphan, V. J., House, C. H., Hinrichs, K. U., McKeegan, K. D. & DeLong, E. F. Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis. Science 293, 484-487 (2001).
-
(2001)
Science
, vol.293
, pp. 484-487
-
-
Orphan, V.J.1
House, C.H.2
Hinrichs, K.U.3
McKeegan, K.D.4
DeLong, E.F.5
-
72
-
-
0141592799
-
Identification of methyl coenzyme M reductase A (mcrA) genes associated with methaneoxidizing archaea
-
Hallam, S. J., Girguis, P. R., Preston, C. M., Richardson, P. M. & DeLong, E. F. Identification of methyl coenzyme M reductase A (mcrA) genes associated with methaneoxidizing archaea. Appl. Environ. Microbiol. 69, 5483-5491 (2003).
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 5483-5491
-
-
Hallam, S.J.1
Girguis, P.R.2
Preston, C.M.3
Richardson, P.M.4
DeLong, E.F.5
-
73
-
-
9144257242
-
A conspicuous nickel protein in microbial mats that oxidize methane anaerobically
-
Kruger, M. et al. A conspicuous nickel protein in microbial mats that oxidize methane anaerobically. Nature 426, 878-881 (2003).
-
(2003)
Nature
, vol.426
, pp. 878-881
-
-
Kruger, M.1
-
74
-
-
4444370893
-
Reverse methanogenesis: Testing the hypothesis with environmental genomics
-
Hallam, S. J. et al. Reverse methanogenesis: testing the hypothesis with environmental genomics. Science 305, 1457-1462 (2004).
-
(2004)
Science
, vol.305
, pp. 1457-1462
-
-
Hallam, S.J.1
-
75
-
-
3242771843
-
Characterization of Ferroplasma isolates and Ferroplasma acidarmanus sp. nov., extreme acidophiles from acid mine drainage and industrial bioleaching environments
-
Dopson, M., Baker-Austin, C., Hind, A., Bowman, J. P. & Bond, P. L. Characterization of Ferroplasma isolates and Ferroplasma acidarmanus sp. nov., extreme acidophiles from acid mine drainage and industrial bioleaching environments. Appl. Environ. Microbiol. 70, 2079-2088 (2004).
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 2079-2088
-
-
Dopson, M.1
Baker-Austin, C.2
Hind, A.3
Bowman, J.P.4
Bond, P.L.5
-
76
-
-
0024447751
-
The mechanism of DNA transfer in the mating system of an archaebacterium
-
Rosenshine, I., Tchelet, R. & Mevarech, M. The mechanism of DNA transfer in the mating system of an archaebacterium. Science 245, 1387-1389 (1989).
-
(1989)
Science
, vol.245
, pp. 1387-1389
-
-
Rosenshine, I.1
Tchelet, R.2
Mevarech, M.3
-
77
-
-
0029895213
-
Exchange of genetic markers at extremely high temperatures in the archaeon Sulfolobus acidocaldarius
-
Grogan, D. W. Exchange of genetic markers at extremely high temperatures in the archaeon Sulfolobus acidocaldarius. J. Bacteriol. 178, 3207-3211 (1996).
-
(1996)
J. Bacteriol.
, vol.178
, pp. 3207-3211
-
-
Grogan, D.W.1
-
78
-
-
0029128732
-
A multicopy plasmid of the extremely thermophilic archaeon Sulfolobus effects its transfer to recipients by mating
-
Schleper, C., Holz, I., Janekovic, D., Murphy, J. & Zillig, W. A multicopy plasmid of the extremely thermophilic archaeon Sulfolobus effects its transfer to recipients by mating. J. Bacteriol. 177, 4417-4426 (1995).
-
(1995)
J. Bacteriol.
, vol.177
, pp. 4417-4426
-
-
Schleper, C.1
Holz, I.2
Janekovic, D.3
Murphy, J.4
Zillig, W.5
-
79
-
-
10344243528
-
Frequent recombination in a saltern population of Halorubrum
-
Papke, R. T., Koenig, J. E., Rodriguez-Valera, F. & Doolittle, W. F. Frequent recombination in a saltern population of Halorubrum. Science 306, 1928-1929 (2004).
-
(2004)
Science
, vol.306
, pp. 1928-1929
-
-
Papke, R.T.1
Koenig, J.E.2
Rodriguez-Valera, F.3
Doolittle, W.F.4
-
80
-
-
0242720403
-
Pathogenic archaea: Do they exist?
-
Cavicchioli, R., Curmi, P. M., Saunders, N. & Thomas, T. Pathogenic archaea: do they exist? Bioessays 25, 1119-1128 (2003).
-
(2003)
Bioessays
, vol.25
, pp. 1119-1128
-
-
Cavicchioli, R.1
Curmi, P.M.2
Saunders, N.3
Thomas, T.4
-
81
-
-
0033603539
-
Phylogenetic classification and the universal tree
-
Doolittle, W. F. Phylogenetic classification and the universal tree. Science 284, 2124-2129 (1999).
-
(1999)
Science
, vol.284
, pp. 2124-2129
-
-
Doolittle, W.F.1
-
82
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig, W. et al. ARB: a software environment for sequence data. Nucleic Acids Res. 32, 1363-1371 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
-
83
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
Rutherford, K. et al. Artemis: sequence visualization and annotation. Bioinformatics 16, 944-945 (2000).
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
-
84
-
-
19144371340
-
Retrieval of first genome data for rice cluster I methanogens by a combination of cultivation and molecular techniques
-
(doi:10.1016)
-
Erkel, C. et al. Retrieval of first genome data for rice cluster I methanogens by a combination of cultivation and molecular techniques. FEMS Microbiol. Ecol. 2005 (doi:10.1016).
-
(2005)
FEMS Microbiol. Ecol.
-
-
Erkel, C.1
|