메뉴 건너뛰기




Volumn 7, Issue 7, 2005, Pages 947-960

Investigation of the methanogen population structure and activity in a brackish lake sediment

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID DERIVATIVE; ARCHAEAL DNA; BICARBONATE; FRESH WATER; METHANE; PRIMER DNA; RNA 16S;

EID: 20444482930     PISSN: 14622912     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2004.00766.x     Document Type: Article
Times cited : (89)

References (72)
  • 1
    • 0036682224 scopus 로고    scopus 로고
    • PRIMROSE: A computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database
    • Ashelford, K.E., Weightman, A.J., and Fry, J.C. (2002) PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database. Nucleic Acids Res 30: 3481-3489.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3481-3489
    • Ashelford, K.E.1    Weightman, A.J.2    Fry, J.C.3
  • 3
    • 0242384034 scopus 로고    scopus 로고
    • Review and re-analysis of domain-specific 16S primers
    • Baker, G.C., Smith, J.J., and Cowan, D.A. (2003) Review and re-analysis of domain-specific 16S primers. J Microbiol Meth 55: 541-555.
    • (2003) J Microbiol Meth , vol.55 , pp. 541-555
    • Baker, G.C.1    Smith, J.J.2    Cowan, D.A.3
  • 4
    • 0019513663 scopus 로고
    • Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
    • Brosius, J., Dull, T.J., Sleeter, D.D., and Noller, H.F. (1981) Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol 148: 107-27.
    • (1981) J Mol Biol , vol.148 , pp. 107-127
    • Brosius, J.1    Dull, T.J.2    Sleeter, D.D.3    Noller, H.F.4
  • 5
    • 0036806065 scopus 로고    scopus 로고
    • Methanogenic archaeal community in the sediment of an artificially partitioned acidic bog lake
    • Chan, O.C., Wolf, M., Hepperle, D. and Casper, P. (2002) Methanogenic archaeal community in the sediment of an artificially partitioned acidic bog lake. FEMS Microbiol Ecol 42: 119-129.
    • (2002) FEMS Microbiol Ecol , vol.42 , pp. 119-129
    • Chan, O.C.1    Wolf, M.2    Hepperle, D.3    Casper, P.4
  • 6
    • 0033989638 scopus 로고    scopus 로고
    • Turnover of glucose and acetate coupled to reduction of nitrate, ferric iron and sulfate and to methanogenesis in anoxic rice field soil
    • Chidthaisong, A., and Conrad, R. (2000) Turnover of glucose and acetate coupled to reduction of nitrate, ferric iron and sulfate and to methanogenesis in anoxic rice field soil. FEMS Microbiol Ecol 31: 73-86.
    • (2000) FEMS Microbiol Ecol , vol.31 , pp. 73-86
    • Chidthaisong, A.1    Conrad, R.2
  • 7
    • 0037251969 scopus 로고    scopus 로고
    • The Ribosomal Database Project (RDP-II): Previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
    • Cole, J.R., Chai, B., Marsh, T.L., Farris, R.J., Wang, Q., Kulam, S.A., et al. (2003) The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31: 442-443.
    • (2003) Nucleic Acids Res , vol.31 , pp. 442-443
    • Cole, J.R.1    Chai, B.2    Marsh, T.L.3    Farris, R.J.4    Wang, Q.5    Kulam, S.A.6
  • 8
    • 0033050621 scopus 로고    scopus 로고
    • Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments
    • Conrad, R. (1999) Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments. FEMS Microbiol Ecol 28: 193-202.
    • (1999) FEMS Microbiol Ecol , vol.28 , pp. 193-202
    • Conrad, R.1
  • 9
    • 0027042311 scopus 로고
    • Bacterial biomass and activity in the deep sediment layers of the Japan Sea, Hole 798B - ODP leg 128
    • Cragg, B.A., Harvey, S.M., Fry, J.C., Herbert, R.A., and Parkes, R.J. (1992) Bacterial biomass and activity in the deep sediment layers of the Japan Sea, Hole 798B - ODP leg 128. Proc Ocean Drill Prog Sci Results 128: 761-776.
    • (1992) Proc Ocean Drill Prog Sci Results , vol.128 , pp. 761-776
    • Cragg, B.A.1    Harvey, S.M.2    Fry, J.C.3    Herbert, R.A.4    Parkes, R.J.5
  • 10
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong, E.F. (1992) Archaea in coastal marine environments. Proc Natl Acad Sci USA 89: 5685-5689.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 11
    • 0032189023 scopus 로고    scopus 로고
    • Microbial diversity in a hydrocarbon- and chlorinated-solvent- contaminated aquifer undergoing intrinsic bioremediation
    • Dojka, M.A., Hugenholtz, P., Haack, S.K., and Pace, N.R. (1998) Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl Environ Microbiol 64: 3869-3877.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3869-3877
    • Dojka, M.A.1    Hugenholtz, P.2    Haack, S.K.3    Pace, N.R.4
  • 12
    • 0142154985 scopus 로고    scopus 로고
    • Analysis of methanogen diversity in a hypereutrophic lake using PCR-RFLP analysis of mcr sequences
    • Earl, J., Hall, G., Pickup, R.W., Ritchie, D.A., and Edwards, C. (2003) Analysis of methanogen diversity in a hypereutrophic lake using PCR-RFLP analysis of mcr sequences. Microbial Ecol 46: 270-278.
    • (2003) Microbial Ecol , vol.46 , pp. 270-278
    • Earl, J.1    Hall, G.2    Pickup, R.W.3    Ritchie, D.A.4    Edwards, C.5
  • 13
    • 0038221194 scopus 로고    scopus 로고
    • Formation of pseudoterminal restriction fragments, a PCR-related bias affecting Terminal Restriction Fragment Length Polymorphism analysis of microbial community structure
    • Egert, M., and Friedrich, M.W. (2003) Formation of pseudoterminal restriction fragments, a PCR-related bias affecting Terminal Restriction Fragment Length Polymorphism analysis of microbial community structure. Appl Environ Microbiol 69: 2555-2562.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2555-2562
    • Egert, M.1    Friedrich, M.W.2
  • 14
    • 8444239817 scopus 로고    scopus 로고
    • Survey of archaeal diversity reveals an abundance of halophilic archaea in a low-salt, sulfide- and sulfur-rich spring
    • Elshahed, M.S., Najar, F.Z., Roe, B.A., Oren, A., Dewers, T.A., and Krumholz, L.R. (2004) Survey of archaeal diversity reveals an abundance of halophilic archaea in a low-salt, sulfide- and sulfur-rich spring. Appl Environ Microbiol 70: 2230-2239.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 2230-2239
    • Elshahed, M.S.1    Najar, F.Z.2    Roe, B.A.3    Oren, A.4    Dewers, T.A.5    Krumholz, L.R.6
  • 15
    • 0026760934 scopus 로고
    • The use of rRNA sequences and fluorescent probes to investigate the phylogenetic positions of the anaerobic ciliate Metopus palaeformis and its archaeobacterial endosymbiont
    • Embley, T.M., Finlay, B.J., Thomas, R.H., and Dyal, P.L. (1992) The use of rRNA sequences and fluorescent probes to investigate the phylogenetic positions of the anaerobic ciliate Metopus palaeformis and its archaeobacterial endosymbiont. J Gen Microbiol 138: 1479-1487.
    • (1992) J Gen Microbiol , vol.138 , pp. 1479-1487
    • Embley, T.M.1    Finlay, B.J.2    Thomas, R.H.3    Dyal, P.L.4
  • 17
    • 0242676203 scopus 로고    scopus 로고
    • Microsite-dependent changes in methanogenic populations in a boreal oligotrophic fen
    • Galand, P.E., Fritze, H., and Yrjala, K. (2003) Microsite-dependent changes in methanogenic populations in a boreal oligotrophic fen. Environ Microbiol 5: 1133-1143.
    • (2003) Environ Microbiol , vol.5 , pp. 1133-1143
    • Galand, P.E.1    Fritze, H.2    Yrjala, K.3
  • 18
    • 0033867966 scopus 로고    scopus 로고
    • Taxonomic phylogenetic and ecological diversity of methanogenic Archaea
    • Garcia, J.L., Patel, B.K.C., and Ollivier, B. (2000) Taxonomic phylogenetic and ecological diversity of methanogenic Archaea. Anaerobe 6: 205-226.
    • (2000) Anaerobe , vol.6 , pp. 205-226
    • Garcia, J.L.1    Patel, B.K.C.2    Ollivier, B.3
  • 19
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good (1953) The population frequencies of species and the estimation of population parameters. Biometrika 40: 237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
  • 20
    • 2542508293 scopus 로고    scopus 로고
    • Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval
    • Grosskopf, R., Janssen, P.H., and Liesack, W. (1998a) Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval. Appl Environ Microbiol 64: 960-969.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 960-969
    • Grosskopf, R.1    Janssen, P.H.2    Liesack, W.3
  • 21
    • 0040336333 scopus 로고    scopus 로고
    • Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms
    • Grosskopf, R., Stubner, S., and Liesack, W. (1998b) Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms. Appl Environ Microbiol 64: 4983-4989.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4983-4989
    • Grosskopf, R.1    Stubner, S.2    Liesack, W.3
  • 24
    • 0030032633 scopus 로고    scopus 로고
    • Isolation and identification of methanogen-specific DNA from blanket bog peat by PCR amplification and sequence analysis
    • Hales, B.A., Edwards, C., Ritchie, D.A., Hall, G., Pickup, R.W., and Saunders, J.R. (1996) Isolation and identification of methanogen-specific DNA from blanket bog peat by PCR amplification and sequence analysis. Appl Environ Microbiol 62: 668-675.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 668-675
    • Hales, B.A.1    Edwards, C.2    Ritchie, D.A.3    Hall, G.4    Pickup, R.W.5    Saunders, J.R.6
  • 25
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment, editor and analysis program for Windows 95/98/NT
    • Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment, editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Ser 41: 95-98.
    • (1999) Nucleic Acids Symposium Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 26
    • 0141592799 scopus 로고    scopus 로고
    • Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing Archaea
    • Hallam, S.J., Girguis, P.R., Preston, C.M., Richardson, P.M., and DeLong, E.F. (2003) Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing Archaea. Appl Environ Microbiol 69: 5483-5491.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5483-5491
    • Hallam, S.J.1    Girguis, P.R.2    Preston, C.M.3    Richardson, P.M.4    DeLong, E.F.5
  • 27
    • 0242285526 scopus 로고    scopus 로고
    • Characterization of methanogenic Archaea in the leachate of a closed municipal solid waste landfill
    • Huang, L.-N., Chen, Y.-Q., Zhou, H., Luo, S., Lan, C.-Y., and Qu, L.-H. (2003) Characterization of methanogenic Archaea in the leachate of a closed municipal solid waste landfill. FEMS Microbiol Ecol 46: 171-177.
    • (2003) FEMS Microbiol Ecol , vol.46 , pp. 171-177
    • Huang, L.-N.1    Chen, Y.-Q.2    Zhou, H.3    Luo, S.4    Lan, C.-Y.5    Qu, L.-H.6
  • 28
    • 20444459451 scopus 로고
    • Crossed and hierarchical analysis of variance
    • Fry, J.C. (ed.). Oxford, UK: The Practical Approach Series, Oxford University Press
    • Iles, T.C. (1993) Crossed and hierarchical analysis of variance. In Biological Data Analysis. Fry, J.C. (ed.). Oxford, UK: The Practical Approach Series, Oxford University Press, pp. 1-39.
    • (1993) Biological Data Analysis , pp. 1-39
    • Iles, T.C.1
  • 29
    • 0033771975 scopus 로고    scopus 로고
    • Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization
    • Jurgens, G., Glockner, F.-O., Amann, R., Saano, A., Montonen, L., Likolammi, M., and Munster, U. (2000) Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization. FEMS Microbiol Ecol 34: 45-56.
    • (2000) FEMS Microbiol Ecol , vol.34 , pp. 45-56
    • Jurgens, G.1    Glockner, F.-O.2    Amann, R.3    Saano, A.4    Montonen, L.5    Likolammi, M.6    Munster, U.7
  • 30
    • 0034812568 scopus 로고    scopus 로고
    • Methanofollis aquaemaris sp. nov., a methanogen isolated from an aquaculture fish pond
    • Lai, M.C., and Chen, S.C. (2001) Methanofollis aquaemaris sp. nov., a methanogen isolated from an aquaculture fish pond. Int J Syst Evol Microbiol 51: 1873-1880.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 1873-1880
    • Lai, M.C.1    Chen, S.C.2
  • 31
    • 0035022369 scopus 로고    scopus 로고
    • Characterization of Methanococcus voltaei strain P2F9701a: A new methanogen isolated from estuarine environment
    • Lai, M.C., and Shih, J.-C. (2001) Characterization of Methanococcus voltaei strain P2F9701a: a new methanogen isolated from estuarine environment. Curr Microbiol 42: 432-437.
    • (2001) Curr Microbiol , vol.42 , pp. 432-437
    • Lai, M.C.1    Shih, J.-C.2
  • 32
    • 0033933786 scopus 로고    scopus 로고
    • Archaeal Population Dynamics during Sequential Reduction Processes in Rice Field Soil
    • Lueders, T., and Friedrich, M. (2000) Archaeal Population Dynamics during Sequential Reduction Processes in Rice Field Soil. Appl Environ Microbiol 66: 2732-2742.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 2732-2742
    • Lueders, T.1    Friedrich, M.2
  • 33
    • 0037225001 scopus 로고    scopus 로고
    • Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts
    • Lueders, T., and Friedrich, M.W. (2003) Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts. Appl Environ Microbiol 69: 320-326.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 320-326
    • Lueders, T.1    Friedrich, M.W.2
  • 34
    • 0035206819 scopus 로고    scopus 로고
    • Molecular analyses of methyl-coenzyme M reductase alpha-subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage
    • Lueders, T., Chin, K.J., Conrad, R., and Friedrich, M. (2001) Molecular analyses of methyl-coenzyme M reductase alpha-subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage. Environ Microbiol 3: 194-204.
    • (2001) Environ Microbiol , vol.3 , pp. 194-204
    • Lueders, T.1    Chin, K.J.2    Conrad, R.3    Friedrich, M.4
  • 35
    • 0036856362 scopus 로고    scopus 로고
    • The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill
    • Luton, P.E., Wayne, J.M., Sharp, R.J., and Riley, P.W. (2002) The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill. Microbiology 148: 3521-3530.
    • (2002) Microbiology , vol.148 , pp. 3521-3530
    • Luton, P.E.1    Wayne, J.M.2    Sharp, R.J.3    Riley, P.W.4
  • 36
    • 0037469604 scopus 로고    scopus 로고
    • Methanogenic population structure in a variety of anaerobic bioreactors
    • McHugh, S., Carton, M., Mahony, T., and O'Flaherty, V. (2003) Methanogenic population structure in a variety of anaerobic bioreactors. FEMS Microbiol Lett 219: 297-304.
    • (2003) FEMS Microbiol Lett , vol.219 , pp. 297-304
    • McHugh, S.1    Carton, M.2    Mahony, T.3    O'Flaherty, V.4
  • 37
    • 0004166833 scopus 로고    scopus 로고
    • Oxford, UK: BIOS. Scientific Publishers
    • McPherson, M.J., and Moller, S.G. (2000). PCR. Oxford, UK: BIOS. Scientific Publishers.
    • (2000) PCR
    • McPherson, M.J.1    Moller, S.G.2
  • 38
    • 0034535113 scopus 로고    scopus 로고
    • Methanogen and bacterial diversity and distribution in deep gas hydrate sediments from the Cascadia Margin as revealed by 16S rRNA molecular analysis
    • Marchesi, J.R., Weightman, A.J., Cragg, B.A., Parkes, R.J., and Fry, J.C. (2001) Methanogen and bacterial diversity and distribution in deep gas hydrate sediments from the Cascadia Margin as revealed by 16S rRNA molecular analysis. FEMS Microbiol Ecol 34: 221-228.
    • (2001) FEMS Microbiol Ecol , vol.34 , pp. 221-228
    • Marchesi, J.R.1    Weightman, A.J.2    Cragg, B.A.3    Parkes, R.J.4    Fry, J.C.5
  • 39
    • 0033868092 scopus 로고    scopus 로고
    • Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis
    • Marsh, T.L., Saxman, P., Cole, J., and Tiedje, J. (2000) Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis. Appl Environ Microbiol 66: 3616-3620.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3616-3620
    • Marsh, T.L.1    Saxman, P.2    Cole, J.3    Tiedje, J.4
  • 40
    • 0030831861 scopus 로고    scopus 로고
    • Phylogenetic diversity of Archaea in sediment samples from a coastal salt marsh
    • Munson, M.A., Nedwell, D.B., and Embley, T.M. (1997) Phylogenetic diversity of Archaea in sediment samples from a coastal salt marsh. Appl Environ Microbiol 63: 4729-4733.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4729-4733
    • Munson, M.A.1    Nedwell, D.B.2    Embley, T.M.3
  • 41
    • 0032971335 scopus 로고    scopus 로고
    • Phylogenetic analysis of peat bog methanogen populations
    • Nercessian, D., Upton, M., Lloyd, D., and Edwards, C. (1999) Phylogenetic analysis of peat bog methanogen populations. FEMS Microbiol Lett 173: 425-429.
    • (1999) FEMS Microbiol Lett , vol.173 , pp. 425-429
    • Nercessian, D.1    Upton, M.2    Lloyd, D.3    Edwards, C.4
  • 42
    • 1342289953 scopus 로고    scopus 로고
    • Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190
    • Newberry, C.J., Webster, G., Cragg, B.A., Parkes, R.J., Weightman, A.J., and Fry, J.C. (2004) Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190. Environ Microbiol 6: 274-287.
    • (2004) Environ Microbiol , vol.6 , pp. 274-287
    • Newberry, C.J.1    Webster, G.2    Cragg, B.A.3    Parkes, R.J.4    Weightman, A.J.5    Fry, J.C.6
  • 43
    • 0035209721 scopus 로고    scopus 로고
    • Evidence for anaerobic syntrophic acetate oxidation during methane production in the profundal sediment of subtropical Lake Kinneret (Israel)
    • Nusslein, B., Chin, K.J., Eckert, W., and Conrad, R. (2001) Evidence for anaerobic syntrophic acetate oxidation during methane production in the profundal sediment of subtropical Lake Kinneret (Israel). Environ Microbiol 3: 460-470.
    • (2001) Environ Microbiol , vol.3 , pp. 460-470
    • Nusslein, B.1    Chin, K.J.2    Eckert, W.3    Conrad, R.4
  • 44
    • 0035317030 scopus 로고    scopus 로고
    • Comparative analysis of methane-oxidizing Archaea and sulfate-reducing Bacteria in anoxic marine sediments
    • Orphan, V.J., Hinrichs, K.-U., Ussler, W., III, Paull, C.K., Taylor, L.T., Sylva, S.P., et al. (2001) Comparative analysis of methane-oxidizing Archaea and sulfate-reducing Bacteria in anoxic marine sediments. Appl Environ Microbiol 67: 1922-1934.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 1922-1934
    • Orphan, V.J.1    Hinrichs, K.-U.2    Ussler III, W.3    Paull, C.K.4    Taylor, L.T.5    Sylva, S.P.6
  • 45
    • 0030805150 scopus 로고    scopus 로고
    • Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16s rRNA
    • Ovreas, L., Forney, L., Daae, F., and Torsvik, V. (1997) Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16s rRNA. Appl Environ Microbiol 63: 3367-3373.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3367-3373
    • Ovreas, L.1    Forney, L.2    Daae, F.3    Torsvik, V.4
  • 46
    • 0000976675 scopus 로고
    • Determination of the substrates for sulphate-reducing bacteria within marine and estuarine sediments with different rates of sulphate reduction
    • Parkes, R.J., Gibosn, G.R., Mueller-Harvey, I., Buckingham, W.J., and Herbert, R.A. (1989) Determination of the substrates for sulphate-reducing bacteria within marine and estuarine sediments with different rates of sulphate reduction. J Gen Microbiol 135: 175-187.
    • (1989) J Gen Microbiol , vol.135 , pp. 175-187
    • Parkes, R.J.1    Gibosn, G.R.2    Mueller-Harvey, I.3    Buckingham, W.J.4    Herbert, R.A.5
  • 47
    • 0031711754 scopus 로고    scopus 로고
    • Bias in template-to-product ratios in multitemplate PCR
    • Polz, M.F., and Cavanaugh, C.M. (1998) Bias in template-to-product ratios in multitemplate PCR. Appl Environ Microbiol 64: 3724-3730.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3724-3730
    • Polz, M.F.1    Cavanaugh, C.M.2
  • 48
    • 0036188405 scopus 로고    scopus 로고
    • Comparison of the molecular diversity of the methanogenic community at the brackish and marine ends of a UK estuary
    • Purdy, K.J., Munson, M.A., Nedwell, D.B., and Embley, T.M. (2002) Comparison of the molecular diversity of the methanogenic community at the brackish and marine ends of a UK estuary. FEMS Microbiol Ecol 39: 17-21.
    • (2002) FEMS Microbiol Ecol , vol.39 , pp. 17-21
    • Purdy, K.J.1    Munson, M.A.2    Nedwell, D.B.3    Embley, T.M.4
  • 49
    • 0037641305 scopus 로고    scopus 로고
    • Analysis of the sulfate-reducing bacterial and methanogenic archaeal populations in contrasting Antarctic sediments
    • Purdy, K.J., Nedwell, D.B., and Embley, T.M. (2003) Analysis of the sulfate-reducing bacterial and methanogenic archaeal populations in contrasting Antarctic sediments. Appl Environ Microbiol 69: 3181-3191.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 3181-3191
    • Purdy, K.J.1    Nedwell, D.B.2    Embley, T.M.3
  • 50
    • 0028165833 scopus 로고
    • Quantification of methanogenic groups in anaerobic biological reactors by oligonucleotide probe hybridization
    • Raskin, L., Poulsen, L., Noguera, D., Rittmann, B., and Stahl, D. (1994) Quantification of methanogenic groups in anaerobic biological reactors by oligonucleotide probe hybridization. Appl Environ Microbiol 60: 1241-1248.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 1241-1248
    • Raskin, L.1    Poulsen, L.2    Noguera, D.3    Rittmann, B.4    Stahl, D.5
  • 51
    • 0031417412 scopus 로고    scopus 로고
    • Detection of methanogens and methanotrophs in natural environments
    • Ritchie, D.A., Edwards, C., McDonald, I.R., and Murrell, J.C. (1997) Detection of methanogens and methanotrophs in natural environments. Global Change Biol 3: 339-350.
    • (1997) Global Change Biol , vol.3 , pp. 339-350
    • Ritchie, D.A.1    Edwards, C.2    McDonald, I.R.3    Murrell, J.C.4
  • 52
    • 0023375195 scopus 로고
    • The Neighbour-Joining Method - A new method for reconstructing phylogenetic trees
    • Saitou, N., and Nei, M. (1987) The Neighbour-Joining Method - a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 53
    • 0035431143 scopus 로고    scopus 로고
    • Effect of primers hybridizing to different evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profiling
    • Schmalenberger, A., Schwieger, F., and Tebbe, C.C. (2001) Effect of primers hybridizing to different evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profiling. Appl Environ Microbiol 67: 3557-3563.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3557-3563
    • Schmalenberger, A.1    Schwieger, F.2    Tebbe, C.C.3
  • 54
    • 0035463837 scopus 로고    scopus 로고
    • Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples
    • Singleton, D.R., Furlong, M.A., Rathbun, S.L., and Whitman, W.B. (2001) Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl Environ Microbiol 67: 4374-4376.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4374-4376
    • Singleton, D.R.1    Furlong, M.A.2    Rathbun, S.L.3    Whitman, W.B.4
  • 55
    • 0029068827 scopus 로고
    • Partial gene-sequences for the α-subunit of methyl-coenzyme-M reductase (mcrl) as a phylogenetic tool for the family Methanosarcinaceae
    • Springer, E., Sachs, M.S., Woese, C.R., and Boone, D.R. (1995) Partial gene-sequences for the α-subunit of methyl-coenzyme-M reductase (mcrl) as a phylogenetic tool for the family Methanosarcinaceae. Int J Syst Bacteriol 45: 554-559.
    • (1995) Int J Syst Bacteriol , vol.45 , pp. 554-559
    • Springer, E.1    Sachs, M.S.2    Woese, C.R.3    Boone, D.R.4
  • 57
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in Bacteriology
    • Stackebrandt, E., and Goebel, B.M. (1994) Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in Bacteriology. Int J Syst Bacteriol 44: 846-849.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 58
    • 0036205605 scopus 로고    scopus 로고
    • Microbial diversity of hydrothermal sediments in the guaymas basin: Evidence for anaerobic methanotrophic communities
    • Teske, A., Hinrichs, K.U., Edgcomb, V., Gomez, A.D., Kysela, D., Sylva, S.P., et al. (2002) Microbial diversity of hydrothermal sediments in the guaymas basin: Evidence for anaerobic methanotrophic communities. Appl Environ Microbiol 68: 1994-2007.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1994-2007
    • Teske, A.1    Hinrichs, K.U.2    Edgcomb, V.3    Gomez, A.D.4    Kysela, D.5    Sylva, S.P.6
  • 59
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX-Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. (1997) The ClustalX-Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 60
    • 0032442873 scopus 로고    scopus 로고
    • Speciation and sorptive behaviour of nickel in an organic-rich estuary (Beaulieu, UK)
    • Turner, A., Nimmo, M., and Thuresson, K.A. (1998) Speciation and sorptive behaviour of nickel in an organic-rich estuary (Beaulieu, UK). Mar Chem 63: 105-118.
    • (1998) Mar Chem , vol.63 , pp. 105-118
    • Turner, A.1    Nimmo, M.2    Thuresson, K.A.3
  • 62
    • 0028509254 scopus 로고
    • TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
    • Van de Peer, Y., and De Wachter, R. (1994) TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Applic Biosci 10: 569-570.
    • (1994) Comput Applic Biosci , vol.10 , pp. 569-570
    • Van De Peer, Y.1    De Wachter, R.2
  • 63
    • 0032868072 scopus 로고    scopus 로고
    • Population structure and phylogenetic characterization of marine benthic Archaea in deep-sea sediments
    • Vetriani, C., Jannasch, H.W., MacGregor, B.J., Stahl, D.A., and Reysenbach, A.-L. (1999) Population structure and phylogenetic characterization of marine benthic Archaea in deep-sea sediments. Appl Environ Microbiol 65: 4375-4384.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4375-4384
    • Vetriani, C.1    Jannasch, H.W.2    MacGregor, B.J.3    Stahl, D.A.4    Reysenbach, A.-L.5
  • 64
    • 1842576603 scopus 로고    scopus 로고
    • DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil
    • Watanabe, T., Asakawa, S., Nakamura, A., Nagaoka, K., and Kimura, M. (2004) DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil. FEMS Microbiol Lett 232: 153-163.
    • (2004) FEMS Microbiol Lett , vol.232 , pp. 153-163
    • Watanabe, T.1    Asakawa, S.2    Nakamura, A.3    Nagaoka, K.4    Kimura, M.5
  • 65
    • 0035676193 scopus 로고    scopus 로고
    • Methanogenic populations involved in the degradation of rice straw in anoxic paddy soil
    • Weber, S., Lueders, T., Friedrich, M.W., and Conrad, R. (2001) Methanogenic populations involved in the degradation of rice straw in anoxic paddy soil. FEMS Microbiol Ecol 38: 11-20.
    • (2001) FEMS Microbiol Ecol , vol.38 , pp. 11-20
    • Weber, S.1    Lueders, T.2    Friedrich, M.W.3    Conrad, R.4
  • 66
    • 0142091782 scopus 로고    scopus 로고
    • Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: A cautionary tale
    • Webster, G., Newberry, C.J., Fry, J.C., and Weightman, A.J. (2003) Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale. J Microbiol Meth 55: 155-164.
    • (2003) J Microbiol Meth , vol.55 , pp. 155-164
    • Webster, G.1    Newberry, C.J.2    Fry, J.C.3    Weightman, A.J.4
  • 67
    • 0027838731 scopus 로고
    • The global methane cycle
    • Whalen, M. (1993) The global methane cycle. Annu Rev Earth Planet Sci 21: 407-426.
    • (1993) Annu Rev Earth Planet Sci , vol.21 , pp. 407-426
    • Whalen, M.1
  • 68
    • 0034010663 scopus 로고    scopus 로고
    • Carbon and hydrogen isotope systematics of bacterial formation and oxidation of methane
    • Whiticar, M.J. (1999) Carbon and hydrogen isotope systematics of bacterial formation and oxidation of methane. Chem Geol 161: 291-314.
    • (1999) Chem Geol , vol.161 , pp. 291-314
    • Whiticar, M.J.1
  • 69
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • von Wintzingerode, F., Gobel, U.B., and Stackebrandt, E. (1997) Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev 21: 213-229.
    • (1997) FEMS Microbiol Rev , vol.21 , pp. 213-229
    • Von Wintzingerode, F.1    Gobel, U.B.2    Stackebrandt, E.3
  • 70
    • 0141643392 scopus 로고    scopus 로고
    • Improved strategy for presumptive identification of methanogens using 16S riboprinting
    • Wright, A.-D.G., and Pimm, C. (2003) Improved strategy for presumptive identification of methanogens using 16S riboprinting. J Microbiol Meth 55: 337-349.
    • (2003) J Microbiol Meth , vol.55 , pp. 337-349
    • Wright, A.-D.G.1    Pimm, C.2
  • 71
    • 0035131221 scopus 로고    scopus 로고
    • Characterization of microbial consortia in a terephthalate-degrading anaerobic granular sludge system
    • Wu, J.-H., Liu, W.-T., Tseng, I.-C., and Cheng, S.-S. (2001) Characterization of microbial consortia in a terephthalate-degrading anaerobic granular sludge system. Microbiology 147: 373-382.
    • (2001) Microbiology , vol.147 , pp. 373-382
    • Wu, J.-H.1    Liu, W.-T.2    Tseng, I.-C.3    Cheng, S.-S.4
  • 72
    • 0033575903 scopus 로고    scopus 로고
    • Methane formation from long-chain alkanes by anaerobic microorganisms
    • Zengler, K., Richnow, H.H., Rossello-Mora, R., Michaelis, W., and Widdel, F. (1999) Methane formation from long-chain alkanes by anaerobic microorganisms. Nature 401: 266-269.
    • (1999) Nature , vol.401 , pp. 266-269
    • Zengler, K.1    Richnow, H.H.2    Rossello-Mora, R.3    Michaelis, W.4    Widdel, F.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.